KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:21:07 2014  Check: 00 ..

 Name: BACU000975/1-179          Len:    182  Check:  7007  Weight:  1.00
 Name: ENSTTRP00000003108/1-134  Len:    182  Check:  2026  Weight:  1.00
 Name: ENSP00000449884/1-142     Len:    182  Check:  4534  Weight:  1.00
 Name: bmy_03596T0/1-128         Len:    182  Check:  941  Weight:  1.00
 Name: ENSBTAP00000003506/1-142  Len:    182  Check:  4660  Weight:  1.00

//


                          1                                                   50
BACU000975/1-179          MNLNCFYVGQ SIKTCPVESS LIRPSSALHS ECLT---SPA DSSFKYVSPL 
ENSTTRP00000003108/1-134  -------MGY IKQNY-LET- FISNSGALYC VCHKTTYSSL PDDYNCKVEL 
ENSP00000449884/1-142     MAVAAVKWVM SKRTI-LKHL FPVQNGALYC VCHKSTYSPL PDDYNCNVEL 
bmy_03596T0/1-128         MALAAVKWAI SSRTI-LKHL FPIQNGALYC VCHKTTYSSL PDDYNCKVEL 
ENSBTAP00000003506/1-142  MALAAVKWAI SSRTM-LKHL FPVENGALYC VGHKSTYSSL PDDYNCKVEL 


                          51                                                 100
BACU000975/1-179          CLFLQHSPER HYGVALKDGQ DLKGQRWVLN VSFHRSKDKQ QNQPDILWEV 
ENSTTRP00000003108/1-134  AL-------- -----TSDGR TI-------- VCYHPS---- ---VDIPYEH 
ENSP00000449884/1-142     AL-------- -----TSDGR TI-------- VCYHPS---- ---VDIPYEH 
bmy_03596T0/1-128         AL-------- -----TSDGR TI-------- VCYHPS---- ---VDIPYEH 
ENSBTAP00000003506/1-142  AL-------- -----TSDAR TI-------- VCYHPS---- ---VDIPYEH 


                          101                                                150
BACU000975/1-179          RRDIIAVHIY AVNPIPRPDP VQNNEETHDL VLKTRLEEKG EHLEQGPMIE 
ENSTTRP00000003108/1-134  TK-------- ---PIPRPDP VQNNEETHDL VLKTRLEEKG EYLEQGPMIE 
ENSP00000449884/1-142     TK-------- ---PIPRPDP VHNNEETHDQ VLKTRLEEKV EHLEEGPMIE 
bmy_03596T0/1-128         TK-------- ---PIPRPDP VQNNEETHDL VLKTRLEEKG EHLEQGPMIE 
ENSBTAP00000003506/1-142  TK-------- ---PIPRPDP VHNNEETHDL VLKTRLEEKS EHLEQGPMIE 


                          151                                                200
BACU000975/1-179          QLSKMFFTTK HRWYPRGQYH RRRRKLNPPK DR 
ENSTTRP00000003108/1-134  QLSKMFFTTK HRWYPRGQYH RRRRKLNPPK DR 
ENSP00000449884/1-142     QLSKMFFTTK HRWYPHGRYH RCRKNLNPPK DR 
bmy_03596T0/1-128         QLSKMFFTTK HRWYPRGQ-- ---------- -- 
ENSBTAP00000003506/1-142  QLSKMFFTTK HRWYPRGQYH RRRRKLNPPK DR