KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:07 2014 Check: 00 .. Name: bmy_08806T0/1-333 Len: 384 Check: 5275 Weight: 1.00 Name: ENSP00000343027/1-354 Len: 384 Check: 3436 Weight: 1.00 Name: ENSTTRP00000006121/1-354 Len: 384 Check: 3436 Weight: 1.00 Name: ENSBTAP00000003515/1-354 Len: 384 Check: 3436 Weight: 1.00 Name: BACU012294/1-161 Len: 384 Check: 1077 Weight: 1.00 // 1 50 bmy_08806T0/1-333 MGGCSSKLTV RVESPPREWM LGSKMSYQQN TAAAESTCRA LEAQRAPAGN ENSP00000343027/1-354 -MGCTLSAED KA-AVERSKM IDRNLREDGE KAAREVKLLL L--------- ENSTTRP00000006121/1-354 -MGCTLSAED KA-AVERSKM IDRNLREDGE KAAREVKLLL L--------- ENSBTAP00000003515/1-354 -MGCTLSAED KA-AVERSKM IDRNLREDGE KAAREVKLLL L--------- BACU012294/1-161 ---------- ---------- ---------- --------LF L--------- 51 100 bmy_08806T0/1-333 CRGFSNRPFN YDLFSDASDG AGESGKSTIV KQMKIIHEAG YSEEECKQYK ENSP00000343027/1-354 ---------- ---------G AGESGKSTIV KQMKIIHEAG YSEEECKQYK ENSTTRP00000006121/1-354 ---------- ---------G AGESGKSTIV KQMKIIHEAG YSEEECKQYK ENSBTAP00000003515/1-354 ---------- ---------G AGESGKSTIV KQMKIIHEAG YSEEECKQYK BACU012294/1-161 ---------- ---------G AGESGKSTIV KQMKIIHEAG YSEEECKQYK 101 150 bmy_08806T0/1-333 AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT ENSP00000343027/1-354 AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT ENSTTRP00000006121/1-354 AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT ENSBTAP00000003515/1-354 AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT BACU012294/1-161 AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT 151 200 bmy_08806T0/1-333 AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT ENSP00000343027/1-354 AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT ENSTTRP00000006121/1-354 AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT ENSBTAP00000003515/1-354 AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT BACU012294/1-161 AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT 201 250 bmy_08806T0/1-333 QQDVLRTRVK TTGIVETHFT FKDLHFKMFD VGGQRSERKK WIHCFEGVTA ENSP00000343027/1-354 QQDVLRTRVK TTGIVETHFT FKDLHFKMFD VGGQRSERKK WIHCFEGVTA ENSTTRP00000006121/1-354 QQDVLRTRVK TTGIVETHFT FKDLHFKMFD VGGQRSERKK WIHCFEGVTA ENSBTAP00000003515/1-354 QQDVLRTRVK TTGIVETHFT FKDLHFKMFD VGGQRSERKK WIHCFEGVTA BACU012294/1-161 QQDVLRTRVK TTGIVETHFT FKDLHFK--- ---------- ---------- 251 300 bmy_08806T0/1-333 IIFC------ ---------- NRMHESMKLF DSICNNKWFT DTSIILFLNK ENSP00000343027/1-354 IIFCVALSDY DLVLAEDEEM NRMHESMKLF DSICNNKWFT DTSIILFLNK ENSTTRP00000006121/1-354 IIFCVALSDY DLVLAEDEEM NRMHESMKLF DSICNNKWFT DTSIILFLNK ENSBTAP00000003515/1-354 IIFCVALSDY DLVLAEDEEM NRMHESMKLF DSICNNKWFT DTSIILFLNK BACU012294/1-161 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_08806T0/1-333 KDLFEEKIKK SPLTICYPEY AGT------- ---LLSVDNL SAR------- ENSP00000343027/1-354 KDLFEEKIKK SPLTICYPEY AGSNTYEEAA AYIQCQFEDL NKRKDTKEIY ENSTTRP00000006121/1-354 KDLFEEKIKK SPLTICYPEY AGSNTYEEAA AYIQCQFEDL NKRKDTKEIY ENSBTAP00000003515/1-354 KDLFEEKIKK SPLTICYPEY AGSNTYEEAA AYIQCQFEDL NKRKDTKEIY BACU012294/1-161 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_08806T0/1-333 IFLSERSPTA RFQLLI---- ---------- ---- ENSP00000343027/1-354 THFTCATDTK NVQFVFDAVT DVIIKNNLKD CGLF ENSTTRP00000006121/1-354 THFTCATDTK NVQFVFDAVT DVIIKNNLKD CGLF ENSBTAP00000003515/1-354 THFTCATDTK NVQFVFDAVT DVIIKNNLKD CGLF BACU012294/1-161 ---------- ---------- ---------- ----