KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:10 2014 Check: 00 .. Name: BACU000266/1-541 Len: 1678 Check: 4541 Weight: 1.00 Name: ENSP00000257177/1-1645 Len: 1678 Check: 3269 Weight: 1.00 Name: ENSBTAP00000003525/1-1667 Len: 1678 Check: 3449 Weight: 1.00 Name: bmy_09991T0/1-844 Len: 1678 Check: 6997 Weight: 1.00 Name: ENSTTRP00000015306/1-1647 Len: 1678 Check: 4051 Weight: 1.00 // 1 50 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 MEESKTLKSE NHEPKKN--V ICEESKAVQV IGNQTLKARN DKSVKEIENS ENSBTAP00000003525/1-1667 MEESKTSENE NHEPKKNAWA LSEESKAVKV ITNQTLKAKN DKSIKEIGTN bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 MEESKTSENE NHEPKKNAWA LSEESKAVKF ITNQTLKARN DKSIKEIGTN 51 100 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 SPNRNSSKKN KQNDICIEKT EVKSCKVNAA NLPGPKDLGL VLRDQSHCKA ENSBTAP00000003525/1-1667 SPNKNSSKKN KQNDICIEKT EVKSCKVNAA SVPGKD---L VLRDQSHCKA bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 SPNRNSNKKN KQNDICIEKT EVKSCKVNAA SVPGPKDLGL VLRDQSHCKA 101 150 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 KKFPNSPVKA EKATISQAKS EKATSLQAKA EKSPKSPNS- V--------- ENSBTAP00000003525/1-1667 KKSPNSPVKA EKLPVSQAKV ERAPSLQAKT EKPSKSPNSP VKTEKTPSSQ bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 KKSPNSPVKA EKVPVSQAKV ERAPSLQAKT EKSPKSLNSP V--------- 151 200 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 ---------- --KAEKASSY QMKSEKVPSS PAEAEKGPSL LLKDMRQKTE ENSBTAP00000003525/1-1667 AIVAEKTLNS QRKAEKAPGS QMKSEKVPSL PAEAENVPNL LLKENMRQTE bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 ---------- --KTEKAPSS QMKSEKVPSL PAEAEKVPSL LLKENMRQTE 201 250 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 LQQIGKKIPS SFTSVDKVNI EAVGGEKCAL QNSPRSQKQQ TCTDNTGDSD ENSBTAP00000003525/1-1667 LQHIGKKIPS SFTSLDKVNI GVAEEEKSAM ENSQRSQKQQ TCTDNTGDSD bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 LQQIGKKIPS SFTSLDKMNI DVAEGEKSAL ENSQQSQKQQ TCTDNTGDSD 251 300 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 DSASGIEDVS DDLSKMKNDE SNKENSSEMD YLENATVIDE SALTPEQRLG ENSBTAP00000003525/1-1667 DSASGTEDIS DDLSKMKSDE SNKENSSEMD YLENATVIDE STLTPEQRLG bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 DSASGTEDIS DDLSKMKNDE SNKENSSEMD YLENATVIDE STLTPEQRLG 301 350 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 LKQAEERLER DHIFRLEKRS PEYTNCRYLC KLCLIHIENI QGAHKHIKEK ENSBTAP00000003525/1-1667 LKQAEERLER DHIFRLEKRS PEYTNCRYLC KLCLIHIENI QGAHKHIKEK bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 LKQAEERLER DHIFRLEKRS PEYTNCRYLC KLCLIHIENI QGAHKHIKEK 351 400 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 RHKKNILEKQ EESELRSLPP PSPAHLAALS VAVIELAKEH GITDDDLRVR ENSBTAP00000003525/1-1667 RHKKNILEKQ EESELRSLPP PSLAHLAALS VAVIELAKEQ GITDDDLKVR bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 RHKKNILEKQ EESELRSLPP PSLAHLAALS VAVIELSKEQ GITDDDLRVR 401 450 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 QEIVEEMSKV ITTFLPECSL RLYGSSLTRF ALKSSDVNID IKFPPKMNHP ENSBTAP00000003525/1-1667 QEIVEEMSKV VTTFLPECSL RLYGSSLTKF ALKSSDVNID IKFPPKMNHP bmy_09991T0/1-844 ------MSKV ITAFLPECSL RLYGSSLTKF ALKSSDVNID IKFPPKMNHP ENSTTRP00000015306/1-1647 QEIVEEMSKV ITAFLPECSL RLYGSSLTKF ALKSSDVNID IKFPPKMNHP 451 500 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 DLLIKVLGIL KKNVLYVDVE SDFHAKVPVV VCRDRK--SG LLCRVSAGND ENSBTAP00000003525/1-1667 DLLIQVLGIL KKSVLYVDVE SDFHAKVPVV VCKDRKSHSG LLCRVSAGND bmy_09991T0/1-844 DLLIQVLGIL KKSVLYVDVE SDFHAKVPVV VCKDRK--SG LLCRVSAGND ENSTTRP00000015306/1-1647 DLLIQVLGIL KKSVLYVDVE SDFHAKVPVV VCKDRK--SG LLCRVSAGND 501 550 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 MACLTTDLLT ALGKIEPVFI PLVLAFRYWA KLCYIDSQTD GGIPSYCFAL ENSBTAP00000003525/1-1667 MACLTTDLLA ALGKMEPVFT PLVLAFRYWA KLCYIDSQTD GGIPSYCFAL bmy_09991T0/1-844 MACLTTDLLA ALGKMEPVFT PLVLAFRYWA KLCYIDSQTD GGIPSYCFAL ENSTTRP00000015306/1-1647 MACLTTDLLA ALGKMEPVFT PLVLAFRYWA KLCYIDSQTD GGIPSYCFAL 551 600 BACU000266/1-541 ---------- -----MILEP EITGLNP--- ---------- -NFDMW---- ENSP00000257177/1-1645 MVMFFLQQRK PPLLPCLLGS WIEGFDPKRM DDFQLKGIVE EKFVKWECNS ENSBTAP00000003525/1-1667 MVMFFLQQRK PPLLPCLLGS WIEGFDPKRM DDFQLKGIVE EKFVKWEYNS bmy_09991T0/1-844 MVMFFLQQRK PPLLPCLLGS WIEGFDPKRM DDFQLKGIVE EKFVKWEYNS ENSTTRP00000015306/1-1647 MVMFFLQQRK PPLLPCLLGS WIEGFDPKRM DDFQLKGIVE EKFVKWEYNS 601 650 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 SSATEKNSIA EENKAKADQP KDDTKKTETD NQSNAMKEKH GKSPLALETP ENSBTAP00000003525/1-1667 SSATERNSIA EENKAKADQP KDDTKKTETT NQSNARKEKY GKSPLTLETP bmy_09991T0/1-844 SSATEKNSIA EENKAKADQP KDDTKKTETD NQSNAMKEKH GK-------- ENSTTRP00000015306/1-1647 SSATEKNSIA EENKAKADQP KDDTKKTETD NQSNAMKEKH GKSPLTLGTP 651 700 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 NRVSLGQLWL ELLKFYTLDF ALEEYVICVR IQDILTRENK NWPKRRIAIE ENSBTAP00000003525/1-1667 NRVSLGQLWL ELLKFYTLDF ALEEYVICVR IKDILTRENK NWPKRRIAIE bmy_09991T0/1-844 ---------- ---------- ---EYVICVR IQDILTRENK NWPKRRIAIE ENSTTRP00000015306/1-1647 NQVSLGQLWL ELLKFYTLDF ALEEYVICVR IQDILTRENK NWPKRRIAIE 701 750 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 DPFSVKRNVA RSLNSQLVYE YVVERFRAAY RYFACPQTKG GNKSTVDFKK ENSBTAP00000003525/1-1667 DPFSIKRNVA RSLNSQLVYE YVVERFRAAY RYFACPQKKG GNKSTVDSMK bmy_09991T0/1-844 DPFSIKRNVA RSLNSQLVYE YVVERFRAAY RYFACPQRKG GNKSTVDSIK ENSTTRP00000015306/1-1647 DPFSIKRNVA RSLNSQLVYE YVVERFRAAY RYFACPQRKG GNKSTVDSMK 751 800 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 REKGKISNKK PVKSNNMATN GCILLGETTE KINAEREQPV QCDEMDCTSQ ENSBTAP00000003525/1-1667 KEKGKISNKK PVKTETVASS CCTLLGESTE KVNAGKGQPD KYNEMECTSQ bmy_09991T0/1-844 KEKGKISNKK PVKSENMASS CCILLGESTE KISAERGQPD KYEEMECTSQ ENSTTRP00000015306/1-1647 KEKGKISNKK PVKSENMASS CCILLGESTE KISAERGQPD KYEETECTSQ 801 850 BACU000266/1-541 ---------- ---------- ---------- ---------- ------PSTS ENSP00000257177/1-1645 RCIIDNNNLL VNELDFADHG QDSSSLSTSK SSEIEPKLDK KQDDLAPSET ENSBTAP00000003525/1-1667 RCITEADNLL VNDLDLAKRG QESSSLSTSE NSELEPRSIK NQDVLAPSET bmy_09991T0/1-844 RCITEDDNLL INELDLAEHG QESSSLSTNE SSELEPKSIK KQDVLVPSET ENSTTRP00000015306/1-1647 RCITEDDNLL INELDLAEHG QESSSLSTSE SSELEPKSIK KQDVLVPSET 851 900 BACU000266/1-541 CL-------- ---------- ---------- ---------- -----TATSL ENSP00000257177/1-1645 CLKKELSQCN CIDLSKSPDP DKSTGTDCRS NLETESSHQS VCTDTSATSC ENSBTAP00000003525/1-1667 CFKKDFSQYN CID-YKSPEP DESSGTDCRS DLETKSSHQI VCTDTSATSC bmy_09991T0/1-844 CFKKELTQYN CID-CKSPEP DESAGTDCRS NLETESSQHI VCTDTSATSC ENSTTRP00000015306/1-1647 CFKKELTQCN CID-CKSPEP DESAGTDCRS NLETESSHHI VCTDTSATSC 901 950 BACU000266/1-541 N--------- ---------- --------FI IS-------- ---------- ENSP00000257177/1-1645 NCKATEDASD LNDDDNLPTQ ELYYVFDKFI LTSGKPPTIV CSICKKDGHS ENSBTAP00000003525/1-1667 NCKATEDASD PNDDENHPIQ ELYYVFDKFI LTSGKPPTIV CSICKKDGHS bmy_09991T0/1-844 NCKAAEDASD LNDDDNHPTQ ELYFVFDKFI LTSGKPPTIV CSICKKDGHS ENSTTRP00000015306/1-1647 NCKATEDTSD LNDDDNHPTQ ELYFVFDKFI LTSGKPPTIV CSICKKDGHS 951 1000 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 KNDCPEDFRK IDLKPLPPMT NRFREILDLV CKRCFDELSP PCSEQHNREQ ENSBTAP00000003525/1-1667 KNDCPEDFRK IDLKPLPPMT NRFRDILDLV CKRCFDELSP PFSEQHNREQ bmy_09991T0/1-844 KTDCPEDFRK IDLKPLPPMT NRFREILDLV CKRCFDELSP PFSEQHNREQ ENSTTRP00000015306/1-1647 KNDCPEDFRK IDLKPLPPMT NRFREILDLV CKRCFDELSP PFSEQHNREQ 1001 1050 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 ILIGLEKFIQ KEYDEKARLC LFGSSKNGFG FRDSDLDICM TLEGHENAEK ENSBTAP00000003525/1-1667 ILIGLEKFIQ KEYDEKARLC LFGSSKNGFG FRDSDLDICM TLEGHENAEK bmy_09991T0/1-844 ILIGLEKFIQ KEYDEKARLC LFGSSKNGFG FRDSDLDICM TLEGHENAEK ENSTTRP00000015306/1-1647 ILIGLEKFIQ KEYDEKARLC LFGSSKNGFG FRDSDLDICM TLEGHENAEK 1051 1100 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 LNCKEIIENL AKILKRHPGL RNILPITTAK VPIVKFEHRR SGLEGDISLY ENSBTAP00000003525/1-1667 LNCKEIIENL AKILKRHPGL RNILPITTAK VPIVKFEHRR SGLEGDISLY bmy_09991T0/1-844 LNCKEIIENL AKILKRHPGL RNILPITTAK VPIVKFEHRR SGLEGDISLY ENSTTRP00000015306/1-1647 LNCKEIIENL AKILKRHPGL RNILPITTAK VPIVKFEHRR SGLEGDISLY 1101 1150 BACU000266/1-541 ---------- ---------- ---------- ---------- ---------- ENSP00000257177/1-1645 NTLAQHNTRM LATYAAIDPR VQYLGYTMKV FAKRCDIGDA SRGSLSSYAY ENSBTAP00000003525/1-1667 NTLAQHNTRM LATYAAIDPR VQYLGYTMKV FAKRCDIGDA SRGSLSSYAY bmy_09991T0/1-844 NTLAQHNTRM LATYAAIDPR VQYLGYTMKV FAK------- ---------- ENSTTRP00000015306/1-1647 NTLAQHNTRM LATYAAIDPR VQYLGYTMKV FAKRCDIGDA SRGSLSSYAY 1151 1200 BACU000266/1-541 ---------- ---------K NIFDGKQIPQ RMVDGWNAFF FDKTEELKKR ENSP00000257177/1-1645 ILMVLYFLQQ RKPPVIPVLQ EIFDGKQIPQ RMVDGWNAFF FDKTEELKKR ENSBTAP00000003525/1-1667 ILMVLYFLQQ RKPPVIPVLQ EIFDGKQIPQ RMVDGWNAFF FDKTEELKKR bmy_09991T0/1-844 ---------Q RKPPVIPVLQ EIFDGKQIPQ RMVDGWNAFF FDKTEELKKR ENSTTRP00000015306/1-1647 ILMVLYFLQQ RKPPVIPVLQ EIFDGKQIPQ RMVDGWNAFF FDKTEELKKR 1201 1250 BACU000266/1-541 LPSLGKNTET LGELWLGLLR FYTEEFDFKE YVISIRQKKL LTTFEKQWTS ENSP00000257177/1-1645 LPSLGKNTES LGELWLGLLR FYTEEFDFKE YVISIRQKKL LTTFEKQWTS ENSBTAP00000003525/1-1667 LPSLGKNTET LGELWLGLLR FYTEEFDFKE YVISIRQKKL LTTFEKQWTS bmy_09991T0/1-844 LPSLGKNTET LGELWLGLLR FYTEEFDFKE YVISIRQKKL LTTFEKQWTS ENSTTRP00000015306/1-1647 LPSLGKNTET LGELWLGLLR FYTEEFDFKE YVISIRQKKL LTTFEKQWTS 1251 1300 BACU000266/1-541 KCIAIEDPFD LNHNLGAGVS RKMTNFIMKA FINGRKLFGT PFYPLIGREA ENSP00000257177/1-1645 KCIAIEDPFD LNHNLGAGVS RKMTNFIMKA FINGRKLFGT PFYPLIGREA ENSBTAP00000003525/1-1667 KCIAIEDPFD LNHNLGAGVS RKMTNFIMKA FINGRKLFGT PFYPLIGREA bmy_09991T0/1-844 KCIAIEDPFD LNHNLGAGVS RKMTNFIMKA FINGRKLFGT PFYPLIGREA ENSTTRP00000015306/1-1647 KCIAIEDPFD LNHNLGAGVS RKMTNFIMKA FINGRKLFGT PFYPLIGREA 1301 1350 BACU000266/1-541 EYFFDSRVLT DGELAPNDRC CRVCGKIGHY MKDCPKRR-S LLFRLKKKDS ENSP00000257177/1-1645 EYFFDSRVLT DGELAPNDRC CRVCGKIGHY MKDCPKRKSS LLFRLKKKDS ENSBTAP00000003525/1-1667 EYFFDSRVLT DGELAPNDRC CRVCGKIGHY MKDCPKRRSS LLFRLKKKDS bmy_09991T0/1-844 NFFF------ ---------- ---------- ---------- FFF------- ENSTTRP00000015306/1-1647 EYFFDSRVLT DGELAPNDRC CRVCGKIGHY MKDCPKRRSS LLFRLKKKDS 1351 1400 BACU000266/1-541 EEEKEGNEEE KDSRDLLDPR DLHDTRDFRD PRDLRCFICG DAGHVRRECP ENSP00000257177/1-1645 EEEKEGNEEE KDSRDVLDPR DLHDTRDFRD PRDLRCFICG DAGHVRRECP ENSBTAP00000003525/1-1667 EEEKEGNEEE KDSRDLLDPR DLHDTRDFRD PRDLRCFICG DAGHVRRECP bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 EEEKEGNEEE KDSRDLLDPR DLHDTRDFRD PRDLRCFICG DAGHVRRECP 1401 1450 BACU000266/1-541 EVKLARQRNS SVAAAQLVRN LVNAQQVAGS AQQQGDQSIR TRQSSECSDS ENSP00000257177/1-1645 EVKLARQRNS SVAAAQLVRN LVNAQQVAGS AQQQGDQSIR TRQSSECSES ENSBTAP00000003525/1-1667 EVKLARQRNS SVAAAQLVRN LVNAQQVAGS AQQQGDQSIR TRQSSECSDS bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 EVKLARQRNS SVAAAQLVRN LVNAQQVAGS AQQQGDQSIR TRQSSECSDS 1451 1500 BACU000266/1-541 PSYSPQPQPF PQNSSQSTAI TQPPSQPGSQ PKLGPPQQGA QSPHQVQMPM ENSP00000257177/1-1645 PSYSPQPQPF PQNSSQSAAI TQPSSQPGSQ PKLGPPQQGA QPPHQVQMPL ENSBTAP00000003525/1-1667 PSYSPQPQPF PQNSSQSTAI TQPPSQPGSQ PKLGPPQQGT QHPHQVQMPM bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 PSYSPQPQPF TQNSSQSTAI TQPPSQPGSQ PKLGPPQQGA QPPHQVQMPM 1501 1550 BACU000266/1-541 YNFPQSPPAQ YSPMHNMGLL PMHPLQIPAP SWPIHGPVIH SAPGSAPSNI ENSP00000257177/1-1645 YNFPQSPPAQ YSPMHNMGLL PMHPLQIPAP SWPIHGPVIH SAPGSAPSNI ENSBTAP00000003525/1-1667 YNFPQSPPAQ YSPMHNMGLL PMHPLQIPAP SWPIHGPVIH SAPGSAPSNI bmy_09991T0/1-844 --FF------ ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 YNFPQSPPAQ YSPMHNMGLL PMHPLQIPAP SWPIHGPVIH SAPGSAPSNI 1551 1600 BACU000266/1-541 GLNDPSIIFA QPAARPVAIP SSSHDGHWPR TVAPNSLVNN GTVGNSEPGF ENSP00000257177/1-1645 GLNDPSIIFA QPAARPVAIP NTSHDGHWPR TVAPNSLVNS GAVGNSEPGF ENSBTAP00000003525/1-1667 GLNDPSIIFA QPAARPVAIP SSSHDGHWPR TVAPNSLVNN GTVGNSEPGF bmy_09991T0/1-844 ---------- ---------- -------W-- ---------- ---------- ENSTTRP00000015306/1-1647 GLNDPSIIFA QPAARPVAIP SSSHDGHWPR TVAPNSLVNN GTVGNSEPGF 1601 1650 BACU000266/1-541 PGLNPPIPWE HAPRPHFPLV PASWPYGLHQ NFMHQGSARF QPNKPFYTQA ENSP00000257177/1-1645 RGLTPPIPWE HAPRPHFPLV PASWPYGLHQ NFMHQGNARF QPNKPFYTQD ENSBTAP00000003525/1-1667 PGLNPPIPWE HAPRPHFPLV PASWPYGLHQ NFMHQGNARF QPNKPFYTQD bmy_09991T0/1-844 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015306/1-1647 PGLNPPIPWE HAPRPHFPLV PASWPYGLHQ NFMHQGNARF QPNKPFYTQD 1651 1700 BACU000266/1-541 GLPMHSNQPI LLSQGYPYLN VSYIQQKK ENSP00000257177/1-1645 RCATRRCR-- ---ERCPHPP RGNVSE-- ENSBTAP00000003525/1-1667 RCATRRCR-- ---ERCPHPP RGNVSE-- bmy_09991T0/1-844 ---------- ---------- -------- ENSTTRP00000015306/1-1647 RCATRRCR-- ---ERCPHPP RGNVSE--