KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:11 2014 Check: 00 .. Name: bmy_17638T0/1-482 Len: 653 Check: 4824 Weight: 1.00 Name: ENSP00000358497/1-597 Len: 653 Check: 6327 Weight: 1.00 Name: ENSBTAP00000003532/1-595 Len: 653 Check: 9212 Weight: 1.00 Name: BACU020149/1-573 Len: 653 Check: 1054 Weight: 1.00 Name: ENSTTRP00000013218/1-574 Len: 653 Check: 5256 Weight: 1.00 // 1 50 bmy_17638T0/1-482 APLLTLPRSG RLGFGRRPGF GYLGPRVQSG ARGGGGGGSA ASVGGGGGCS ENSP00000358497/1-597 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003532/1-595 ---------- ---------- ---------- ---------- ---------- BACU020149/1-573 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013218/1-574 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_17638T0/1-482 RPQDMAHNKI PPRWLNCPRR GQPVAGRFLP LKTMLGPRYD SQVAEENRFH ENSP00000358497/1-597 ----MAHNKI PPRWLNCPRR GQPVAGRFLP LKTMLGPRYD SQVAEENRFH ENSBTAP00000003532/1-595 ----MAHNKI PPRWLNCPRR GQPVAGRFLP LKTMLGPRYD SQVAEENRFH BACU020149/1-573 ---------- ---------- ------RFLP LKTMLGPRYD SQVAEENRFH ENSTTRP00000013218/1-574 ---------- ---------- ------RFLP LKTMLGPRYD SQVAEENRFH 101 150 bmy_17638T0/1-482 PSMLSNYLKS LKVKMGLLVD LTNTSRFYDR NDIEKEGIKY IKLQCKGHGE ENSP00000358497/1-597 PSMLSNYLKS LKVKMGLLVD LTNTSRFYDR NDIEKEGIKY IKLQCKGHGE ENSBTAP00000003532/1-595 PSMLSNYLKS LKVKMGLLVD LTNTSRFYDR NDIEKEGIKY IKLQCKGHGE BACU020149/1-573 PSMLSNYLKS LKL-FSLFII FGCIGSLLLH VGFLWLWQAG ATPHCGAWAS ENSTTRP00000013218/1-574 PSMLSNYLKS LKXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 151 200 bmy_17638T0/1-482 CPTTENTETF IRLCERFNER NPPELIG-VH CTHGFNRTGF LICAFLVEKM ENSP00000358497/1-597 CPTTENTETF IRLCERFNER NPPELIG-VH CTHGFNRTGF LICAFLVEKM ENSBTAP00000003532/1-595 CPTTENTETF IRLCERFNER NPPELIG-VH CTHGFNRTGF LICAFLVEKM BACU020149/1-573 HCGGFSCCRA RALGTRASVV VTHGLSSCVH CTHGFNRTGF LICAFLVEKM ENSTTRP00000013218/1-574 XXXXXXXXXX XXXXXXXXXX XXXXXXX-VH CTHGFNRTGF LICAFLVEKM 201 250 bmy_17638T0/1-482 DWSIEAAVAT FAQARPPGIY KGDYLKELFR RYGDIEEAPP PPLLPDWCFE ENSP00000358497/1-597 DWSIEAAVAT FAQARPPGIY KGDYLKELFR RYGDIEEAPP PPLLPDWCFE ENSBTAP00000003532/1-595 DWSIEAAVAT FAQARPPGIY KGDYLKELFR RYGDIEEAPP PPLLPDWCFE BACU020149/1-573 DWSIEAAVAT FAQARPPGIY KGDYLKELFR RYGDIEEAPP PPLLPDWCFE ENSTTRP00000013218/1-574 DWSIEAAVAT FAQARPPGIY KGDYLKELFR RYGDIEEAPP PPLLPDWCFE 251 300 bmy_17638T0/1-482 DDEDEDEDED GKKESEPGSS ASFGKRRKER LKLGAIFLEG VTVKGVTQVT ENSP00000358497/1-597 DDEDEDEDED GKKESEPGSS ASFGKRRKER LKLGAIFLEG VTVKGVTQVT ENSBTAP00000003532/1-595 DDEDEDEDED GKKESEPGSS ASFGKRRKER LKLGAIFLEG VTVKGVTQVT BACU020149/1-573 DDEDEDEDED GKKESEPGSS ASFGKRRKER LKLGAIFLEG VTVKGVTQVT ENSTTRP00000013218/1-574 DDEDEDEDED GKKESEPGSS ASFGKRRKER LKLGAIFLEG VTVKGVTQVT 301 350 bmy_17638T0/1-482 TQPKLGEVQQ KCHQFCGWEG SGFPGAQPIS MDKQNIKLLE QKPYKVSWKA ENSP00000358497/1-597 TQPKLGEVQQ KCHQFCGWEG SGFPGAQPVS MDKQNIKLLD LKPYKVSWKA ENSBTAP00000003532/1-595 TQPKLGEVQQ KCHQFCGWEG SGFPGAQPVS MDKQNIKLLE QKPYKVSWKA BACU020149/1-573 TQPKLGEVQQ KCHQFCGWEG SGFPGAQPIS MDKQNIKLLE QKPYKVSWKA ENSTTRP00000013218/1-574 TQPKLGEVQQ KCHQFCGWEG SGFPGAQPIS MDKQNIKLLE QKPYKVSWKA 351 400 bmy_17638T0/1-482 DGTRYMMLID GTNEVFMIDR DNSVFHVSNL EFPFRKDLRM HLSNTLLDG- ENSP00000358497/1-597 DGTRYMMLID GTNEVFMIDR DNSVFHVSNL EFPFRKDLRM HLSNTLLDGE ENSBTAP00000003532/1-595 DGTRYMMLID GTNEVFMIDR DNSVFHVSNL EFPFRKDLRM HLSNTLLDGE BACU020149/1-573 DGTRYMMLID GTNEVFMIDR DNSVFHVSNL EFPFRKDLRM HLSNTLLDGE ENSTTRP00000013218/1-574 DGTRYMMLID GTNEVFMIDR DNSVFHVSNL EFPFRKDLRM HLSNTLLDGE 401 450 bmy_17638T0/1-482 ---------- ---------- ---AQPVGDC DFNIRLQCIE REIINPRHEK ENSP00000358497/1-597 MIIDRVNGQA VPRYLIYDII KFNSQPVGDC DFNVRLQCIE REIISPRHEK ENSBTAP00000003532/1-595 MIIDRVNGQA VPRYLIYDII KFNAQPVGDC DFNIRLQCIE REIINPRHEK BACU020149/1-573 MIIDRVNGQA VPRYLIYDII KFNAQPVGDC DFNIRLQCIE REIINPRHEK ENSTTRP00000013218/1-574 MIIDRVNGQA VPRYLIYDII KFNAQPVGDC DFNIRLQCIE REIINPRHEK 451 500 bmy_17638T0/1-482 MKTGLIDKTQ EPFRVRNKPF FDIHASRKSI NMSFIIEIEY ---GLM---- ENSP00000358497/1-597 MKTGLIDKTQ EPFSVRNKPF FDICTSRKLL EGNFAKEVSH EMDGLIFQPT ENSBTAP00000003532/1-595 MKTGLIDKTQ EPFSVRHKPF FDIYASRKLL EGNFAKEVSH EMDGLIFQPT BACU020149/1-573 MKTGLIDKTQ EPFRVRNKPF FDIHASRKLL EGNFAKEVSH EMDGLIFQPT ENSTTRP00000013218/1-574 MKTGLIDKTQ EPFRVRNKPF FDIHASRKLL EGNFAKEVSH EMDGLIFQPT 501 550 bmy_17638T0/1-482 ---------- ----DPFNLI HLPFQ----- ---------- ---------- ENSP00000358497/1-597 GKYKPGRCDD ILKWKPPSLN SVDFRLKITR MGGEGLLPQN VGLLYVGGYE ENSBTAP00000003532/1-595 GKYKPGRCDD ILKWKPPSLN SVDFRLKITR MGGEGLLPQN IGLLYVGGYE BACU020149/1-573 GKYKPGRCDD ILKWKPPSLN SVDFRLKITR MGGEGLLPQN VGLLYVGGYE ENSTTRP00000013218/1-574 GKYKPGRCDD ILKWKPPSLN SVDFRLKITR MGGEGLLPQN VGLLYVGGYE 551 600 bmy_17638T0/1-482 ---------- ---------- ---------- ---------- ---------- ENSP00000358497/1-597 RPFAQIKVTK ELKQYDNKII ECKFENNSWV FMRQRTDKSF PNAYNTAMAV ENSBTAP00000003532/1-595 RPFAQIKVTK ELKQYDNKII ECKFENNSWV FMRQRTDKSF PNAYNTAMAV BACU020149/1-573 RPFAQIKVTK ELKQYDNKII ECKFENNSWV FMRQRTDKSF PNAYNTAMAV ENSTTRP00000013218/1-574 RPFAQIKVTK ELKQYDNKII ECKFENNSWV FMRQRTDKSF PNAYNTAMAV 601 650 bmy_17638T0/1-482 ---------- ---------- ---------- ---------- ---------R ENSP00000358497/1-597 CNSISNPVTK EMLFEFIDRC TAASQGQKRK -HHLDPDTEL MPPPPPKRPR ENSBTAP00000003532/1-595 CNSISNPVTK EMLFEFIDRC AAASQGQKRK -HHPDPDTEL MPPPPPK--R BACU020149/1-573 CSSISNPVTK EMLFEFINRC VTASQGQKRK HHHLDPDTEL MPPPPPK--R ENSTTRP00000013218/1-574 CNSISNPVTK EMLFEFINRC AAASQGQKRK HHHLDPDTEF MPPPPPK--R 651 700 bmy_17638T0/1-482 RI- ENSP00000358497/1-597 PLT ENSBTAP00000003532/1-595 PLT BACU020149/1-573 RL- ENSTTRP00000013218/1-574 RLI