KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:12 2014 Check: 00 .. Name: ENSTTRP00000001741/1-718 Len: 762 Check: 9811 Weight: 1.00 Name: ENSP00000362942/1-712 Len: 762 Check: 9379 Weight: 1.00 Name: bmy_08010T0/1-711 Len: 762 Check: 8551 Weight: 1.00 Name: ENSBTAP00000003535/1-712 Len: 762 Check: 2783 Weight: 1.00 Name: BACU003263/1-754 Len: 762 Check: 5877 Weight: 1.00 // 1 50 ENSTTRP00000001741/1-718 -MGQADISRP VNPDGV---- ---------- ---------- ---------- ENSP00000362942/1-712 -MGQADVSRP VNPDAV---- ---------- ---------- ---------- bmy_08010T0/1-711 MFSPENLPDE IPTKYFSSFI DTEAHGSQRR EGKGHFEDCA EIINWLFSSL ENSBTAP00000003535/1-712 -MGQADISRP VNPDGV---- ---------- ---------- ---------- BACU003263/1-754 -MGQADISRP VNPDGVELLS KKYTYQIARV KQHHFLTQLR SKICFPRVGT 51 100 ENSTTRP00000001741/1-718 -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362942/1-712 -------EEA DQPTTEPGMV LDSVEAGDTT PPTKRKSKFS GFGKIFKPWK bmy_08010T0/1-711 SPSHHATEEA GQPTADPGMV MDSVEAGDTT PPTKRKSKFS GFGKIFKPWK ENSBTAP00000003535/1-712 -------EEI GQPTADLGMV MDCVEAGDIT PPTKRKSKFS GFGKIFKPWK BACU003263/1-754 SDLIVPAEEA GQPTADPGMV MDSVEAGDTT PPTKRKSKFS GFGKIFKPWK 101 150 ENSTTRP00000001741/1-718 XXXXXXXXXX XXXXXXLERK ISMRKPREEL VKRGVLLEDP EQGGEDPGKL ENSP00000362942/1-712 WRKKKSSDKF KETSEVLERK ISMRKPREEL VKRGVLLEDP EQGGEDPGKP bmy_08010T0/1-711 WRKKK-SDKF KETSEVLERK ISMRKPREEL VKRGVLLEDS EQGGEDPGKL ENSBTAP00000003535/1-712 WRKKK-SDKF KETSEVLERK ISMRKPREEL VKRGLLLEDS EQGGEDPGKL BACU003263/1-754 WRKKK-SDKF KETSEVLERK ISMRKPREEL VKRGVLLEDS EQGGEDPRKL 151 200 ENSTTRP00000001741/1-718 SHATLKNGHT TPIGSARSSS PVQVEEEPRR IASLKKPIPE EDPKKRLGST ENSP00000362942/1-712 SDAMLKNGHT TPIGNARSSS PVQVEEEPVR LASLRKAIPE EDLKKRLGST bmy_08010T0/1-711 SHATLKNGHT TPIGSARSSS PVQVEEEPRR IANLKKPIPE EDPKKRLGST ENSBTAP00000003535/1-712 SHATLKNGHT TLIGSTRSSS PVQVEEESER IASLRKPVPE EEPKKRLGSS BACU003263/1-754 SHATLKNGHT TPIGSARSSS PVQVEEEPRR IANLKKPIPE EDPKKRLGST 201 250 ENSTTRP00000001741/1-718 GNQPNSEAES IPESVPKQPL LPPKRHLASS HEANEGQAKD ATSSGSTARP ENSP00000362942/1-712 GSQPNSEAES VPENVPKPPL LPPKRPLSSS HEASEGQAKD ATSSGGTARF bmy_08010T0/1-711 GSQPNSEAES IPENVPKQPL LPPKRHLSSS HEANEGHAKD ATSSGSXARP ENSBTAP00000003535/1-712 GSQPHSEAEF VPESIPKQPL LPPKRHLSSS HEANEGQAKD ATSSGSLARP BACU003263/1-754 GSQPNSEAES IPENVPKQPL LPPKRHLSSS HEANEGHAKD ATSSGSTARP 251 300 ENSTTRP00000001741/1-718 LSSTPTTAIT TAPAATTAAT NPAKTVNSSV PPSQAPRTLP ASSASTNTTA ENSP00000362942/1-712 IISTS---IT TAPAATTAAT SLAKTVNLSV TPSPAPRTLP AAPASTNTTA bmy_08010T0/1-711 LSSTSTTAIT TAPAAATAAT NPAKTVNSSV PPSQAPRTLP ASPASTNTTA ENSBTAP00000003535/1-712 SSSASTTAIT TAPAATMAAT NPAKTVHSSG PPSQAPRTLP AAPASTHTTA BACU003263/1-754 LSSTSTTAIT TAPAATTAAT NPAKTVNSSV PPSQAPRTLP ASPASTNTTA 301 350 ENSTTRP00000001741/1-718 TPSLTHTVPA KQPPIPPPKP AHRNSNPVIA ELSQAINSGT LLSKLSPPLP ENSP00000362942/1-712 TPSLTHMVPA KQPPIPPPKP AHRNSNPVIA ELSQAINSGT LLSKPSPPLP bmy_08010T0/1-711 TPSLTHTVPA KQPPIPPPKP AHRNSHPVIA ELSQAINSGT LLSKLSPPLP ENSBTAP00000003535/1-712 TLSLTHTGPA KQPPIPPPKP THRNSNPVIA ELSQAINSGT LLSKPSPPLP BACU003263/1-754 TPSLTHTVPA KQPPIPPPKP AHRNSNPVIA ELSQAINSGT LLSKLSPPLP 351 400 ENSTTRP00000001741/1-718 PKRGIPSTLV PTSESAAATA --TTTKAPSD QKEKSTCSVG SEPLLMIPPT ENSP00000362942/1-712 PKRGIPSTSV PTLESAAA-- --ITTKTPSD EREKSTCSMG SELLPMISPR bmy_08010T0/1-711 PKRGIPSTLV PTSESAAATA TTTTTKAPSD QKEKSTCSVG SEPLLMIPPT ENSBTAP00000003535/1-712 PKRGIPSALV PTSESAAAT- --TATKAPSD QREKSACSVG SEPLL----T BACU003263/1-754 PKRGIPSTLV PTSESAAATA --TTTKAPSD QKEKNTCSVG SQPLPMIPPT 401 450 ENSTTRP00000001741/1-718 APSPPLPTHI PPEPPRSPPF PAKTFQVVPE NEFPPSLDLP QEVPQQESQK ENSP00000362942/1-712 SPSPPLPTHI PPEPPRTPPF PAKTFQVVPE IEFPPSLDLH QEIPQQEDQK bmy_08010T0/1-711 APSPPLPTHI PPEPPRSPPF PAKTFQVVPE VEFPPSLDLP QEVPQQESQK ENSBTAP00000003535/1-712 PSSSPLPAHI PPEPPQSPPF PAKTFQVVPE IEFPPSLDLP QEIPQQESQK BACU003263/1-754 APSPPLPTHI PPEPPRSPPF PAKTFQVVPE IEFPPSLDLP QEVPQQESQK 451 500 ENSTTRP00000001741/1-718 REVPKRMLDH SFGEPHVPSR LPQVPLHIRI QQALASPLPM TPPLEGSHRA ENSP00000362942/1-712 KEVPKRILDQ NFGEPHIPSR LPPLPLHIRI QQALTSPLPM TPILEGSHRA bmy_08010T0/1-711 REVPKRMLDH SFGEPHVPSR LPPVPLHIRI QQALTSPLPV TPPLEGSHRA ENSBTAP00000003535/1-712 REVPKRMLDH SFGEPQVPPR LPPVPLHIRI QQALTSPLPV TPPLEGSHRA BACU003263/1-754 REVPKRMLDH SFGEPHVPSR LPPVPLHIRI QQALTSPLSV TPPLEGSHRA 501 550 ENSTTRP00000001741/1-718 HSLLFENSDN FSEDSSTLGR TRSLPITIEM LKVPDDEEEE EQIHIIAFDA ENSP00000362942/1-712 HSLLFENSDS FSEDSSTLGR TRSLPITIEM LKVPDDEEEE EQTCPSTFSE bmy_08010T0/1-711 HSLLFENSDN FSEDSSTLGR TRSLPITIEM LKVPDDEEEE EQIHIFAFDA ENSBTAP00000003535/1-712 HSLLFENSDN FSEDSSTLGR TRSLPITIEM LKVPDDEEEE EQSHIFAFDE BACU003263/1-754 HSLLFENSDN FSEDSSTLGR TRSLPITIEM LKVPDDEEEE EQIHIFAFDA 551 600 ENSTTRP00000001741/1-718 DVASTSVIPK LPQCLQEEEE GKESDSDSEG PIQYRDEEDE DESHHXXXXX ENSP00000362942/1-712 EMTPTSVIPK LPQCLREEEE -KESDSDSEG PIQYRDEEDE DESYQSALAN bmy_08010T0/1-711 DVASTSVVPK LPQCLQEEEE GKESDSDSEG PIQYRDEEDE DESHHSALAN ENSBTAP00000003535/1-712 DVASTSVIPK LPQCLQEEEE GKESDSDSEG PIQYRDEEDE DESHHSALAN BACU003263/1-754 DVASTSVVPK LPQCLQEEEE GKESDSDSEG PIQYRDEEDE DESHHSALAN 601 650 ENSTTRP00000001741/1-718 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRLS ENSP00000362942/1-712 KVKRKDTLAM KLNHRPSEPE LNLNSWPCKS KEEWNEIRHQ IGNTLIRRLS bmy_08010T0/1-711 KVKRKDTLAM KLNHRPSEPE MNMNSWPRKS KEEWNEIRHQ IANTLIRRLS ENSBTAP00000003535/1-712 KVKRKDTLAM KLNHKPSEPE MNMNSWPRKS KEEWNEIRHQ IGNTLIRRLS BACU003263/1-754 KVKRKDTLAM KLNHRPSEPE MNMNSWPRKS KEEWNEIRHQ IANTLIRRLS 651 700 ENSTTRP00000001741/1-718 QRPTPEELEQ RNILQPKNEA DRQAEKREIK RRLTRKLSQR PTVAELLARK ENSP00000362942/1-712 QRPTPEELEQ RNILQPKNEA DRQAEKREIK RRLTRKLSQR PTVAELLARK bmy_08010T0/1-711 QRPTPEELEQ RNILQPKNEA DRQAEKREIK RRLTR----- ---------- ENSBTAP00000003535/1-712 QRPTPEELEQ RNILQPKNEA DRQAEKREIK RRLTRKLSQR PTVAELLARK BACU003263/1-754 QRPTPEELEQ RNILQPKNEA DRQAEKREIK RRLTRKLSQR PTVAELLARK 701 750 ENSTTRP00000001741/1-718 ILRFNEYVEV TDAHDYDRRA DKPWTKLTPA DKAAIRKELN EFKSSEMEVH ENSP00000362942/1-712 ILRFNEYVEV TDAQDYDRRA DKPWTKLTPA DKAAIRKELN EFKSSEMEVH bmy_08010T0/1-711 ---------- ---------- ---------- -KAAIRKELN EFKSSEMEVH ENSBTAP00000003535/1-712 ILRFNEYVEV TDAHDYDRRA DKPWTKLTPA DKAAIRKELN EFKSSEMEVH BACU003263/1-754 ILRFNEYVEV TDAHDYDRRA DKPWTKLTPA DKAAIRKELN EFKSSEMEVH 751 800 ENSTTRP00000001741/1-718 EESKHFTRYH RP ENSP00000362942/1-712 EESKHFTRYH RP bmy_08010T0/1-711 EESKHFTR-- -- ENSBTAP00000003535/1-712 EDSKHFTRYH RP BACU003263/1-754 EESKHFTR-- --