KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:18 2014 Check: 00 .. Name: ENSTTRP00000000332/1-739 Len: 813 Check: 8707 Weight: 1.00 Name: bmy_18725T0/1-489 Len: 813 Check: 5773 Weight: 1.00 Name: BACU005829/1-672 Len: 813 Check: 5947 Weight: 1.00 Name: ENSP00000379496/1-769 Len: 813 Check: 763 Weight: 1.00 Name: ENSBTAP00000003553/1-594 Len: 813 Check: 1072 Weight: 1.00 // 1 50 ENSTTRP00000000332/1-739 ---------- ---------- ---------A NEAGDKTARP LACFSXXXXX bmy_18725T0/1-489 ---------- ---------- MDRYKKLSKC MCSQDMVLKG LGDLTWVPRP BACU005829/1-672 ---------- ---------- ---------- ---------- ---------- ENSP00000379496/1-769 MTDAGNRKEG FKKCRSATFS IDGYSFTIVA NEAGDKNARP LARFSRSKSQ ENSBTAP00000003553/1-594 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000332/1-739 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18725T0/1-489 KILWNSIKKL DVQTATYRGT CPWGHWP--- ---------- ---------- BACU005829/1-672 ---------- -------MSF PP-------- ---------- ---------- ENSP00000379496/1-769 NCLWNSLIDG LTGNVKEKPR PTIVHDPRPP EEILADELPQ LDSSEVLVKT ENSBTAP00000003553/1-594 ---------- --------SS PT-------- ---------- ---------- 101 150 ENSTTRP00000000332/1-739 XXXLRSLVKQ LERGEASVVD LKKNLEYAAT VLESVYIDET RRLLDTEDEL bmy_18725T0/1-489 -FRLRSLVKQ LERGEASVVD LKKNLEYAAT VLESVYIDET RRLLDTEDEL BACU005829/1-672 --RLRSLVKQ LERGEASVVD LKKNLEYAAT VLESVYIDET RRLLDTEDEL ENSP00000379496/1-769 SFRLRSLVKQ LERGEASVVD LKKNLEYAAT VLESVYIDET RRLLDTEDEL ENSBTAP00000003553/1-594 -SRLRSLVKQ LERGEASVVD LKKNLEYAAS VLESVYIDET RRLLDTEDEL 151 200 ENSTTRP00000000332/1-739 SDIQSDAVPS EVRDWLASTF TRQMGMILRR SEEKPRFKSI VHAVQAGIFV bmy_18725T0/1-489 SDIQSDAVPS EVRDWLASTF TRQMGMILRR SEEKPRFKSI VHAVQAGIFV BACU005829/1-672 SDIQSDAVPS EVRDWLASTF TRQMGMILRR SEEKPRFKSI VHAVQAGIFV ENSP00000379496/1-769 SDIQSDAVPS EVRDWLASTF TRQMGMMLRR SDEKPRFKSI VHAVQAGIFV ENSBTAP00000003553/1-594 SDIQSDAVPS EVRDWLASTF TRQMGMMLRR SEEKPRFKSI VHAVQAGIFV 201 250 ENSTTRP00000000332/1-739 ERMYRRTSNM VGLSYPPAVI EALKDVDKWS FDVFSLNEAS GDHALKFIFY bmy_18725T0/1-489 ERMYRRTSNM VGLSYPPAVI EALKDVDKWS FDVFSLNEAS GDHALKFIFY BACU005829/1-672 ERMYRRTSNM VGLSYPPAVI EALKDVDKWS FDVFSLNEAS GDHALKFIFY ENSP00000379496/1-769 ERMYRRTSNM VGLSYPPAVI EALKDVDKWS FDVFSLNEAS GDHALKFIFY ENSBTAP00000003553/1-594 ERMYRRTSNM VGLSYPPAVI EALKDVDKWS FDVFSLNEAS GDHALKFIFY 251 300 ENSTTRP00000000332/1-739 ELLTRYDLIS RFKIPISALV SFVEALEVGY SKHKNPYHNL MHAADVTQTV bmy_18725T0/1-489 ELLTRYDLIS RFKIPISALV SFVEALEVGY SKHKNPYHNL MHAADVTQTV BACU005829/1-672 ELLTRYDLIS RFKIPISALV SFVEALEVGY SKHKNPYHNL MHAADVTQTV ENSP00000379496/1-769 ELLTRYDLIS RFKIPISALV SFVEALEVGY SKHKNPYHNL MHAADVTQTV ENSBTAP00000003553/1-594 ELLTRYDLIS RFKIPISALV SFVEALEVGY SKHKNPYHNL MHAADVTQTV 301 350 ENSTTRP00000000332/1-739 HYLLYKTGVA ---------- ---------- ---------- ---------- bmy_18725T0/1-489 HYLLYKTGVA VKRFQTPNLS SGPFIAFIRR EKLYLILLII YDIIWHADHV BACU005829/1-672 HYLLYKTGVA ---------- ---------- ---------- ---------- ENSP00000379496/1-769 HYLLYKTGVA ---------- ---------- ---------- ---------- ENSBTAP00000003553/1-594 HYLLYKTGVA ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000000332/1-739 ----NWLTEL EIFAIIFSAA IHDYEHTGTT NNFHIQTRSD PAILYNDRSV bmy_18725T0/1-489 TLLHNWLTEL EIFAIIFSAA IHDYEHTGTT NNFHIQTRSD PAILYNDRSV BACU005829/1-672 ----NWLTEL EIFAIIFSAA IHDYEHTGTT NNFHIQTRSD PAILYNDRSV ENSP00000379496/1-769 ----NWLTEL EIFAIIFSAA IHDYEHTGTT NNFHIQTRSD PAILYNDRSV ENSBTAP00000003553/1-594 ----NWLTEL EIFAIIFSAA IHDYEHTGTT NNFHIQTRSD PAILYNDRSV 401 450 ENSTTRP00000000332/1-739 LENHHLSAAY RLLQEDEEMN ILINLSKDDW REFRTLVIEM VMATDMSCHF bmy_18725T0/1-489 LENHHLSAAY RLLQEDEEMN ILVNLSKDDW REFRTLVIEM VMATDMSCHF BACU005829/1-672 LENHHLSAAY RLLQEDEEMN ILINLSKDDW REFRTLVIEM VMATDMSCHF ENSP00000379496/1-769 LENHHLSAAY RLLQDDEEMN ILINLSKDDW REFRTLVIEM VMATDMSCHF ENSBTAP00000003553/1-594 LENHHLSAAY RLLQEDEEMN ILINLSKDDW REFRTLVIEM VMATDMSCHF 451 500 ENSTTRP00000000332/1-739 QQIKAMKTAL QQPEAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18725T0/1-489 QQIKAMKTAL QQPEAIEKPK ALSLMLHTAD ISHPAKAWEL HHRWTMSLLE BACU005829/1-672 QQIKAMKTAL QQPEAIEKPK ALSLMLHTAD ISHPAKAWEL HHRWTMSLLE ENSP00000379496/1-769 QQIKAMKTAL QQPEAIEKPK ALSLMLHTAD ISHPAKAWDL HHRWTMSLLE ENSBTAP00000003553/1-594 QQIKAMKTAL QQPEAIEKPK ALSLMLHTAD ISHPAKAWEL HHRWTMSLLE 501 550 ENSTTRP00000000332/1-739 XXXXXGDREA ELGLPFSPLC DRKSTMVAQS QVGFIDFIVE PTFTVLTDMT bmy_18725T0/1-489 EFFRQVHRSR EI-------- ---------- ---------- ---------- BACU005829/1-672 EFFRQGDREA ELGLPFSPLC DRKSTMVAQS QVGFIDFIVE PTFTVLTDMT ENSP00000379496/1-769 EFFRQGDREA ELGLPFSPLC DRKSTMVAQS QVGFIDFIVE PTFTVLTDMT ENSBTAP00000003553/1-594 EFFRQGDREA ELGLPFSPLC DRKSTMVAQS QVGFIDFIVE PTFTVLTDMT 551 600 ENSTTRP00000000332/1-739 EKILSPLIDE TSQTGGTGQR RSSLNNISSA DAKRSGVKSS GSEGSAPINN bmy_18725T0/1-489 ---------- --------KR KACLH----- ---------- ---------- BACU005829/1-672 EKILSPLIDE TSQTGGTGQR RSSLNNISLA DAKRSGVKSS GSEGSAPINN ENSP00000379496/1-769 EKIVSPLIDE TSQTGGTGQR RSSLNSISSS DAKRSGVKTS GSEGSAPINN ENSBTAP00000003553/1-594 EKIVSPLIDE PSQTGGTGQR RSSLNNISST DAKRSGVKSS GSEGSAPINN 601 650 ENSTTRP00000000332/1-739 SVIPVDCKSF KATWTEVVHV NRERWRAKVP KEEKAKKEAE EKARLAAEEK bmy_18725T0/1-489 ---------- ---------- ---------- ---------- ---------- BACU005829/1-672 SVISVDCKSF KTTWTEVVHV NRERWRAKVP KEEKAKKEAE EKARLAAEEK ENSP00000379496/1-769 SVISVDYKSF KATWTEVVHI NRERWRAKVP KEEKAKKEAE EKARLAAEEQ ENSBTAP00000003553/1-594 PVIPVDYKSF KATWTEVVHI NRERWRAKVP KEEKAKKEAE EKARLAAEEK 651 700 ENSTTRP00000000332/1-739 QKEMEAKSQT EEGASGKAEK KASGEAKNQV NGTGTNQSDS PRAKNSKAEK bmy_18725T0/1-489 KHKLELKENV PEAM------ ---------- ---------- ---------- BACU005829/1-672 QKEMEAKSQA EEGASGKAEK KASGEAKNQV NGTGTDKSDS PRGQNSKAEK ENSP00000379496/1-769 QKEMEAKSQA EEGASGKAEK KTSGETKNQV NGTRANKSDN PRGKNSKAEK ENSBTAP00000003553/1-594 QKEMEAKSQA EESASGKAEK KTSGEAKNQV NGTRTNKSNN PHGKNSKTEK 701 750 ENSTTRP00000000332/1-739 SSGEKQQNGD LKDDKNKTDK KDQSSVRNDS KKTDGTKKHS HGSPAPSTSS bmy_18725T0/1-489 ---------- ---------- ---------- ---------- ---------- BACU005829/1-672 SSGEKQQNGD LKDGKNKTDQ KDQSNVRNDS KKTDGTKKHS HGSPAPSTSS ENSP00000379496/1-769 SSGEQQQNGD FKDGKNKTDK KDHSNIGNDS KKTDGTKQRS HGSPAPSTSS ENSBTAP00000003553/1-594 SSGEKQQNGD LKDGKNKTGK KDQSDVGNDS KKTDG----- ---------- 751 800 ENSTTRP00000000332/1-739 TSRLTLPVTK PPLRHFKHPA YASSAYAPSV PKKTDE-PAR YKMLDQRIKM bmy_18725T0/1-489 ---------- ---------- ---------- ---------- ---------- BACU005829/1-672 TSCLTLPVIK PPLRHFKCPA YASSSYAPSV PKKTDEHPAR YKMLDQRIKM ENSP00000379496/1-769 TCRLTLPVIK PPLRHFKRPA YASSSYAPSV SKKTDEHPAR YKMLDQRIKM ENSBTAP00000003553/1-594 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000000332/1-739 QKIQNISHNW NRK bmy_18725T0/1-489 ---------- --- BACU005829/1-672 KKIQNISHNW NRK ENSP00000379496/1-769 KKIQNISHNW NRK ENSBTAP00000003553/1-594 ---------- ---