KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:19 2014 Check: 00 .. Name: bmy_21933T0/1-272 Len: 327 Check: 8003 Weight: 1.00 Name: ENSP00000340836/1-214 Len: 327 Check: 9914 Weight: 1.00 Name: ENSBTAP00000003560/1-214 Len: 327 Check: 9285 Weight: 1.00 Name: BACU003218/1-190 Len: 327 Check: 8426 Weight: 1.00 Name: ENSTTRP00000002891/1-257 Len: 327 Check: 2417 Weight: 1.00 // 1 50 bmy_21933T0/1-272 LIWFGKIPEH FLXLRFSPDL FQESLGLFGS SQTFQLXPLL SIDNLDF--- ENSP00000340836/1-214 ---------- -MSKPPPKPV KPGQVKVFRA LYTFE----- ---------- ENSBTAP00000003560/1-214 ---------- -MSKPPPKPV KPGQVKVFRA LYTFE----- ---------- BACU003218/1-190 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002891/1-257 ---------- LLVRRPGVDA GPRRTTANQT RNSEAPGVPA GGHSVGFSAW 51 100 bmy_21933T0/1-272 ---------- ---------- ---------- ----QDQPDE LYFEEGDIIY ENSP00000340836/1-214 ---------- ---------- ---------- ----PRTPDE LYFEEGDIIY ENSBTAP00000003560/1-214 ---------- ---------- ---------- ----PRTPDE LYFEEGDIIY BACU003218/1-190 ---------- ---------- ---------- ----TQTPDE LYFEEGDIIY ENSTTRP00000002891/1-257 SLESAAPGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPDE LYFEEGDIIY 101 150 bmy_21933T0/1-272 ITDMSDTNWW KGTSKGRTGL IPSNY----- ---------- ---GNLSWLR ENSP00000340836/1-214 ITDMSDTNWW KGTSKGRTGL IPSNYVAEQA ESIDNPLHEA AKRGNLSWLR ENSBTAP00000003560/1-214 ITDMSDTNWW KGTCKGRTGL IPSNYVAEQA ESIDNPLHEA AKRGNLSWLR BACU003218/1-190 ITDMSDTGWW KGISKGRTGL IPSNYVAEQA ESIDNPLHEA AKGGNLSWLR ENSTTRP00000002891/1-257 ITDMSDTNWW KGTSKGRTGL IPSNYVAEQA ESIDNPLHEA AKRGNLSWLR 151 200 bmy_21933T0/1-272 ECLDNRVGVN GLDKAGSTAL YWACHGGHKD IVEMLFTQPN IELNQQNKLG ENSP00000340836/1-214 ECLDNRVGVN GLDKAGSTAL YWACHGGHKD IVEMLFTQPN IELNQQNKLG ENSBTAP00000003560/1-214 ECLDNRVGVN GLDKAGSTAL YWACHGGHRD IVEMLFTQPN IELNQQNKLG BACU003218/1-190 ECLDNRVGVN GLDKAGSTAL YWACHGGHKD TVEMLFTQPN IELNQQNKLG ENSTTRP00000002891/1-257 ECLDNRVGVN GLDKAGSTAL YWACHGGHKD IVEVLFTQPN IELNQQNKLG 201 250 bmy_21933T0/1-272 DTPLHAAAWK GYADIVQLLL AKGARTDLRN NEKKLALDMA TNAACASLLK ENSP00000340836/1-214 DTALHAAAWK GYADIVQLLL AKGARTDLRN IEKKLAFDMA TNAACASLLK ENSBTAP00000003560/1-214 DTALHAAAWK GYADIVQLLL EKGARTDLRN NEKKLALDMA TNAACASLLK BACU003218/1-190 DTALHAAAWK GYADIVQLLL AKLARTDLRN NDKKLALDMA TNAACASLLK ENSTTRP00000002891/1-257 DTALHAAAWK GYADIVQLLL AKGARTDLRN NEKKLALDMA TNAACASLLK 251 300 bmy_21933T0/1-272 KKQGTGYYHF QSSQTWLSFY PVTLPSGKAT GCRLTGATCA LVIGRGGWKH ENSP00000340836/1-214 KKQGT----- ---------- ---------- ---------- ---------- ENSBTAP00000003560/1-214 KKQGT----- ---------- ---------- ---------- ---------- BACU003218/1-190 KKQGT----- ---------- ---------- ---------- ---------- ENSTTRP00000002891/1-257 KKQGT----- ---------- ---------- ---------- ---------- 301 350 bmy_21933T0/1-272 SCQGGRASDA VRTLSNAEDY LDDEDSD ENSP00000340836/1-214 --------DA VRTLSNAEDY LDDEDSD ENSBTAP00000003560/1-214 --------DA VRSLSNAEDY LDDEDSD BACU003218/1-190 --------DA VQTLSNAEDY LDDEESD ENSTTRP00000002891/1-257 --------DA VRTLSNAEDY -------