KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:20 2014 Check: 00 .. Name: ENSP00000381102/1-284 Len: 290 Check: 4844 Weight: 1.00 Name: ENSBTAP00000003561/1-277 Len: 290 Check: 7304 Weight: 1.00 Name: bmy_13713T0/1-235 Len: 290 Check: 4590 Weight: 1.00 Name: ENSTTRP00000007435/1-231 Len: 290 Check: 4525 Weight: 1.00 Name: BACU008586/1-284 Len: 290 Check: 4863 Weight: 1.00 // 1 50 ENSP00000381102/1-284 MAADGERSPL LSEPIDGGAG GNGLVGPGGS GAGPGGGLTP SAPPYGAGKH ENSBTAP00000003561/1-277 MAADGERSPL LSEPIDGGAG GNGLVGPGGS GAGPGGGLTP SAPPYGA--- bmy_13713T0/1-235 MAADGERSPL LSEPIDGGAG GNGLVGPGGS GAGPGGGLTP SAPPYGA--- ENSTTRP00000007435/1-231 ---------- ---------- ---------- -----GGLTP SAPPYGAGKH BACU008586/1-284 MAADGERSPL LSEPIDGGAG GNGLVGPGGS GAGPGGGLTP SAPPYGAGKH 51 100 ENSP00000381102/1-284 APPQAFPPFP EGHPAVLPGE DPPPYSPLTS PDSGSAPMIT CRVCQSLINV ENSBTAP00000003561/1-277 ----AFPPFP EGHPAVLPGE DPPPYSPLTS PDSGSAPMIT CRVCQSLINV bmy_13713T0/1-235 ----AFPPFP EGHPAVLPGE DPPPYSPLTS PDSGSAPMIT CRVCQSLINV ENSTTRP00000007435/1-231 APPQAFPPFP EGHPAVLPGE DPPPYSPLTS PDSGSAPMIT CRVCQSLINV BACU008586/1-284 APPQAFPPFP EGHPAVLPGE DPPPYSPLTS PDSGSAPMIT CRVCQSLINV 101 150 ENSP00000381102/1-284 EGKMHQHVVK CGVCNEATPI KNAPPGKKYV RCPCNCLLIC KVTSQRIACP ENSBTAP00000003561/1-277 EGKMHQHVVK CGVCNEATPI KNAPPGKKYV RCPCNCLLIC KVTSQRIACP bmy_13713T0/1-235 EGKMHQHVVK CGVCNEATPI KNAPPGKKYV RCPCNCLLIC KVTSQRIACP ENSTTRP00000007435/1-231 EGKMHQHVVK CGVCNEATPI KNAPPGKKYV RCPCNCLLIC KVTSQRIACP BACU008586/1-284 EGKMHQHVVK CGVCNEATPI KNAPPGKKYV RCPCNCLLIC KVTSQRIACP 151 200 ENSP00000381102/1-284 RPYC------ KRIINLGPVH PGPLSPEPQP MGVRVICGHC KNTFLWTEFT ENSBTAP00000003561/1-277 RPYC------ KRIINLGPVH PGPLSPEPQP VGVRVICGHC KNTFLWTEFT bmy_13713T0/1-235 RPYCLFLLYS KRIINLGPVH PGPLSPEPQP VGVRVICGHC KNTFLFGTWK ENSTTRP00000007435/1-231 RPYC------ KRIINLGPVH PGPLSPEPQP VGVRVICGHC KNTFLWTEFT BACU008586/1-284 RPYC------ KRIINLGPVH PGPLSPEPQP VGVRVICGHC KNTFLWTEFT 201 250 ENSP00000381102/1-284 DRTLARCPHC RKVSSIGRRY PRKRCICCFL LGLLLAVTAT GLAFGTWKHA ENSBTAP00000003561/1-277 DRTLARCPHC RKVSSIGRRY PRKRCICCFL LGLLLAVTAT GLAFGTWKHA bmy_13713T0/1-235 --------HA QR-------- ---------- ---------- ---------- ENSTTRP00000007435/1-231 DRTLARCPHC RKVSSIGRRY PRKRCICCFL LGLLLAVTAT GLA------- BACU008586/1-284 DRTLARCPHC RKVSSIGRRY PRKRCICCFL LGLLLAVTAT GLAFGTWKHA 251 300 ENSP00000381102/1-284 RRYGGIYAAW AFVILLAVLC LGRALYWACM KVSHPVQNFS ENSBTAP00000003561/1-277 RRYGGIYAAW AFVILLAVLC LGRALYWACM KVSHPVQNFS bmy_13713T0/1-235 --YGGIYAAW AFVILLAVLC LGRALYWACM KVSHPVQNFS ENSTTRP00000007435/1-231 ---------- AFVILLAVLC LGRALYWACM -VSHPVQNFS BACU008586/1-284 QRYGGIYAAW AFVILLAVLC LGRALYWACM KVSHPVQNFS