KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:23 2014 Check: 00 .. Name: ENSBTAP00000003567/1-408 Len: 567 Check: 9942 Weight: 1.00 Name: BACU006153/1-524 Len: 567 Check: 7328 Weight: 1.00 Name: ENSP00000381333/1-444 Len: 567 Check: 2008 Weight: 1.00 Name: bmy_10251T0/1-445 Len: 567 Check: 2295 Weight: 1.00 Name: ENSTTRP00000008594/1-430 Len: 567 Check: 1146 Weight: 1.00 // 1 50 ENSBTAP00000003567/1-408 --------NR LPRL------ ------LCPQ ALLLLGLNSI SASLQDQHCE BACU006153/1-524 ------MLPQ GGALDLAFED C-----RLHQ ALLLLGLHSI SASLQDQHCE ENSP00000381333/1-444 ---------M GGHPQL---- ------RLVK ALLLLGLNPV SASLQDQHCE bmy_10251T0/1-445 APQSRAAPDL VGREDTAEEE GREAGPVGEG ALLLLGLHSI SASLQDQHCE ENSTTRP00000008594/1-430 ---------R LGRWG----- ------VCVW ALLLLGLHSI SASLQDQHCE 51 100 ENSBTAP00000003567/1-408 SLSMASNVSG LQCNASVDLI GTCWPQSPAG QLVVRPCPAY FYGVRYNTTN BACU006153/1-524 SVSLAGNISG LQCNASVDLI GTCWPQSPAG QLVVRPCPAY FYGVRYNTTN ENSP00000381333/1-444 SLSLASNISG LQCNASVDLI GTCWPRSPAG QLVVRPCPAF FYGVRYNTTN bmy_10251T0/1-445 SLSLAGNISG LQCNASVDLI GTCWPQSPAG QLVVRPCPAY FYGVRYNTTN ENSTTRP00000008594/1-430 SLSLAGNISG LQCNASVDLI GTCWP-SPAG QLVVRPCPAY FYGVRYNTTN 101 150 ENSBTAP00000003567/1-408 NG-------- ---------- ---------- ---------- ---------- BACU006153/1-524 NGYRECLANG TWAARVNYSE CQEILSEEVR LRASYPIEGR ARAPSTALHL ENSP00000381333/1-444 NG-------- ---------- ---------- ---------- ---------- bmy_10251T0/1-445 NG-------- ---------- ---------- ---------- ---------- ENSTTRP00000008594/1-430 NG-------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000003567/1-408 ---------- ---------- ---------- --YRECLANG TWAARVNYSE BACU006153/1-524 LAASRMGEPE AGVSALQREA NWGARTRPAH NGYRECLANG TWAARVNYSE ENSP00000381333/1-444 ---------- ---------- ---------- --YRECLANG SWAARVNYSE bmy_10251T0/1-445 ---------- ---------- ---------- --YRECLANG TWAARVNYSE ENSTTRP00000008594/1-430 ---------- ---------- ---------- --YRECLANG TWAARVNYSE 201 250 ENSBTAP00000003567/1-408 CQEILSEEKK SKVHYHIAVI INYLGHCISL AALLVAFVLF LRL------- BACU006153/1-524 CQEILSEEKK SKVHYHVAVI INYLGHCISL VALLVAFVLF LRL------- ENSP00000381333/1-444 CQEILNEEKK SKVHYHVAVI INYLGHCISL VALLVAFVLF LRLRPGCTHW bmy_10251T0/1-445 CQEILSEEKK SKVHYHVAVI INYLGHCISL VALLVAFVLF LRL------- ENSTTRP00000008594/1-430 CQEILSEEKK SKVHYHVAVI INYLGHCISL VALLVAFVLF LRLRPGCTHL 251 300 ENSBTAP00000003567/1-408 ---------- ---------- --RSIRCLRN IIHWNLISAF ILRNATWFVV BACU006153/1-524 ---------- ---------- --RSIRCLRN IIHWNLISAF ILRNATWFVV ENSP00000381333/1-444 GDQADGALEV GAPWSGAPFQ VRRSIRCLRN IIHWNLISAF ILRNATWFVV bmy_10251T0/1-445 ---------- ---------- --RSIRCLRN IIHWNLISAF ILRNATWFVV ENSTTRP00000008594/1-430 GDQEGGALWV ---------- --RSIRCLRN TIHWNLISAF ILRNATWFVV 301 350 ENSBTAP00000003567/1-408 QLTMSPEVHQ SNVGWCRLVT AAYNYFHVTN FFWMFGEGCY LHTAIVLTYS BACU006153/1-524 QLTMSPDVHQ SNVGWCRLVT AAYNYFHVTN FFWMFGEGCY LHTAIVLTYS ENSP00000381333/1-444 QLTMSPEVHQ SNVGWCRLVT AAYNYFHVTN FFWMFGEGCY LHTAIVLTYS bmy_10251T0/1-445 QLTMSPEVHQ SNVGWCRLVT AAYNYFHVTN FFWMFGEGCY LHTAIVLTYS ENSTTRP00000008594/1-430 QLTMSPEVHQ SNVGWCRLVT AAYNYFHVTN FFWMFGEGCY LHTAIVLTYS 351 400 ENSBTAP00000003567/1-408 TDRLRKWMFI CIGWGVPFPI IVAWAIGKLY YDNEKCWFGK RPGVYTDYIY BACU006153/1-524 TDRLRKWMFI CIGWGVPFPI IVAWAIGKLY YDNEKCWFGK KPGVYTDYIY ENSP00000381333/1-444 TDRLRKWMFI CIGWGVPFPI IVAWAIGKLY YDNEKCWFGK RPGVYTDYIY bmy_10251T0/1-445 TDRLRKWMFI CIGWGVPFPI IVAWAIGKL- -----CWFGK RPGVYTDYIY ENSTTRP00000008594/1-430 TDRLRKWMFI CIGWGVPFPI IVAWAIGKLY YDNEKCWFGK RPGVYTDYIY 401 450 ENSBTAP00000003567/1-408 QGPMILVLL- ---------- ---------- -----VRTWV GGRWRAQWGE BACU006153/1-524 QGPMILVLLP LARTRAQAIP PCVKLQINFI FLFNIVRILM -TKLRASTTS ENSP00000381333/1-444 QGPMILVLL- ---------- ------INFI FLFNIVRILM -TKLRASTTS bmy_10251T0/1-445 QGPMILVLLP LAHTHAQAIP PCVKLQINFI FLFNIVRILM -TKLRASTTS ENSTTRP00000008594/1-430 QGPMILVLL- ---------- ------INFI FLFNIVRILM -TKLRASTTS 451 500 ENSBTAP00000003567/1-408 ASSTYHGLKA VKATLVLLPL LGITYMLFFV NPGEDEVSRV VFIYFNSFLE BACU006153/1-524 ETIQYR--KA VKATLVLLPL LGITYMLFFV NPGEDEVSRV VFIYFNSFLE ENSP00000381333/1-444 ETIQYR--KA VKATLVLLPL LGITYMLFFV NPGEDEVSRV VFIYFNSFLE bmy_10251T0/1-445 ETIQYR--KA VKATLVLLPL LGITYMLFFV NPGEDEVSRV VFIYFNSFLE ENSTTRP00000008594/1-430 ETIQYR--KA VKATLVLLPL LGITYMLFFV NPGEDEVSRV VFIYFNSFLE 501 550 ENSBTAP00000003567/1-408 SFQGFFVSVF YCFLNSEVRS AIRKRWHRWQ DKHSIRARVA RAMSIPTSPT BACU006153/1-524 SFQGFFVSVF YCFLNSEVRS AIRKRWHRWQ DKHSIRARVA RAMSIPTSPT ENSP00000381333/1-444 SFQGFFVSVF YCFLNSEVRS AIRKRWHRWQ DKHSIRARVA RAMSIPTSPT bmy_10251T0/1-445 SFQGFFVSVF YCFLNSEVRS AIRKRWHRWQ DKHSIRARVA RAMSIPTSPT ENSTTRP00000008594/1-430 SFQGFFVSVF YCFLNSEVRS AIRKRWHRWQ DKHSIRARVA RAMSIPTSPT 551 600 ENSBTAP00000003567/1-408 R-VSFHSIKQ STAV--- BACU006153/1-524 RDNALLSIAN GLSMTDL ENSP00000381333/1-444 R-VSFHSIKQ STAV--- bmy_10251T0/1-445 R-VSFHSIKQ STAV--- ENSTTRP00000008594/1-430 R-VSFHSIKQ STAV---