KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:29 2014 Check: 00 .. Name: ENSP00000216862/1-514 Len: 551 Check: 8175 Weight: 1.00 Name: ENSBTAP00000003588/1-448 Len: 551 Check: 1699 Weight: 1.00 Name: ENSTTRP00000003602/1-514 Len: 551 Check: 4511 Weight: 1.00 Name: bmy_00254T0/1-551 Len: 551 Check: 8824 Weight: 1.00 Name: BACU011311/1-514 Len: 551 Check: 5112 Weight: 1.00 // 1 50 ENSP00000216862/1-514 MSSPISKSRS LAAFLQQLRS PRQPPRLVTS TAYTSPQPRE VPVCPLTAGG ENSBTAP00000003588/1-448 MSSPISKSRS LAAFLQQLRS LGQPPRPVTS TACSPRRPRE VPLCPVMEPG ENSTTRP00000003602/1-514 MSSPIGKSRS LAAFLQELRS LGQPPRPVTS TACAPRRPRE VPLCPMMEQG bmy_00254T0/1-551 MSSPISKGRS LAAFLQELRS LGQPPRPVTS TACAPRRPRE VPLCPMMERG BACU011311/1-514 MSSPISKGRS LAAFLQELRS LGQPPRPVTS TACAPRRPRE VPLCPMMERG 51 100 ENSP00000216862/1-514 ETQNAAALPG PTSWPLLGSL LQILWKGGLK KQHDTLV--- ---------- ENSBTAP00000003588/1-448 EAQDAATLPG PTKWPLLGSL LEILWKGGLK KQHDTLV--- ---------- ENSTTRP00000003602/1-514 EAQDAAALPG PTKWPLLGSL LEILWKGGLK KQHDTLA--- ---------- bmy_00254T0/1-551 AAQDAAALPG PTKWPLLGSL LEILWKGGLK KQHDTLVNAY SRPQFPLCSP BACU011311/1-514 AAQDAAALPG PTKWPLLGSL LEILWKGGLK KQHDTLA--- ---------- 101 150 ENSP00000216862/1-514 ---------- ------EYHK KYGKIFRMKL GSFESVHLGS PCLLEALYRT ENSBTAP00000003588/1-448 ---------- ------EYHK KYGKIFRMKL GSFDSVHLGS PCLLEALYRT ENSTTRP00000003602/1-514 ---------- ------EYHE KYGKIFRMKL GSFDSVHLGS PCLLEALYRT bmy_00254T0/1-551 PCSPNPPRGA RFGRTAEYHK KYGKIFRMKL GSFDSVHLGS PCLLEALYRT BACU011311/1-514 ---------- ------EYHK KYGKIFRMKL GSFDSVHLGS PCLLEALYRT 151 200 ENSP00000216862/1-514 ESAYPQRLEI KPWKAYRDYR KEGYGLLILE GEDWQRVRSA FQKKLMKPGE ENSBTAP00000003588/1-448 ESAHPQRLEI KPWKAYRDYR EEGYGLLILE GEDWQRVRSA FQKKLMKPVE ENSTTRP00000003602/1-514 ESAYPQRLEI KPWKAYRDYR EEGYGLLILE GEDWQRVRSA FQKKLMKPVE bmy_00254T0/1-551 ESAYPQRLEI KPWKAYRDYR EEGYGLLILE GEDWQRVRSA FQKKLMKPVE BACU011311/1-514 ESAYPQRLEI KPWKAYRDYR EEGYGLLILE GEDWQRVRSA FQKKLMKPVE 201 250 ENSP00000216862/1-514 VMKLDNKINE VLADFMGRID ELCDERGHVE DLYSELNKWS FESICLVLYE ENSBTAP00000003588/1-448 IMKLDDKINE VLADFMGRID ELCDERGRIE DLYTELNKWS FESICLVLYE ENSTTRP00000003602/1-514 IMKLDNKINE VLADFTGRIS ELCDERGCIE DLYSELNKWS FESICLVLYE bmy_00254T0/1-551 IMKLDNKINE VLADFTGRIG ELCDERGCIE DLYSELNKWS FESICLVLYE BACU011311/1-514 IMKLDNKINE VLADFTGRIG ELCDERGCME DLYSELNKWS FESICLVLYE 251 300 ENSP00000216862/1-514 KRFGLLQKNA GDEAVNFIMA IKTMMSTFGR MMVTPVELHK SLNTKVWQDH ENSBTAP00000003588/1-448 KRFGLLQKNA GEEALNFIMA VKTMMSMFGK MMVTPVELHR SLNTRVWQAH ENSTTRP00000003602/1-514 KRFGLLQKNA GDEALNFIMA IKTMMSTFGR MMVTPVELHK SLTPKVWQAH bmy_00254T0/1-551 KRFGLLQKNA GDEALNFIMA IKTMMSTFGR MMVTPVELHK SLNTKVWQAH BACU011311/1-514 KRFGLLQKNA GDEALNFIMA IKTMMSTFGR MMVTPVELHK SLNTKVWQAH 301 350 ENSP00000216862/1-514 TLAWDTIFKS VKACIDNRLE KYSQQPSADF LCDIYHQNRL SKKELYAAVT ENSBTAP00000003588/1-448 TQAWDTIFRS VKSCVDNRLE KYSEQPSMDF LCDIYHHNQL SKKELYAAVT ENSTTRP00000003602/1-514 TLGWDTIFKS IKSCVDNRLE KYSEQPSMDF ISDIYHHNQL SKKELYAAVT bmy_00254T0/1-551 TLAWDTIFKS VKSCVDNQLE KYSEQPSMDF ICDIYHHNQL SKKELYAAVT BACU011311/1-514 TLAWDTIFKS VKSCVDNQLE KYSEQPSMDF ICDIYHHNQL SKKELYAAVT 351 400 ENSP00000216862/1-514 ELQLAAVETT ANSLMWILYN LSRNPQVQQK LLKEIQSVLP ENQVPRAEDL ENSBTAP00000003588/1-448 ELQLAAVETT ANSLMWILYN LSRNPHVQQK LFKEIQSVLP ENQLPRAEDL ENSTTRP00000003602/1-514 ELQLAAVETT ANSLMWILFN LSRNPHVQQK LLKEIQSVLP ENQMPRAEDL bmy_00254T0/1-551 ELQLAAVETT ANSLMWILYN LSRNPHVQQK LLKEIRSVLP ENQMPRAEDL BACU011311/1-514 ELQLAAVETT ANSLMWILYN LSRNPHVQQK LLKEIQSVLP ENQMPRAEDL 401 450 ENSP00000216862/1-514 RNMPYLKACL KESMRLTPSV PFTTRTLDKA TVLGEYALPK GTVLMLNTQV ENSBTAP00000003588/1-448 RNMPYLKACL KESMRLNPTV PFTTRTLDKA MVLGEYALPK G--------- ENSTTRP00000003602/1-514 RNMPYLKACL KESMRLTPSV PFTTRTLDKA MVLGEYALPK GTVLMLNTHV bmy_00254T0/1-551 RNMPYLKACL KESMRLTPSV PFTTRTLDKA MVLGEYALPK GTVLMLNTHV BACU011311/1-514 RNMPYLKACL KESMRLTPSV PFTTRTLDKA MVLGEYALPK GTVLMLNTHV 451 500 ENSP00000216862/1-514 LGSSEDNFED SSQFRPERWL QEKEKINPFA HLPFGVGKRM CIGRRLAELQ ENSBTAP00000003588/1-448 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003602/1-514 LGSNEENFED SSQFRPERWL QDKKKINPFA HLPFGIGKRM CVGRRLAELQ bmy_00254T0/1-551 LGASEENFED SSQFRPERWL QDKKKINPFA HLPFGIGKRM CIGRRLAELQ BACU011311/1-514 LGASEENFED SSQFRPERWL QDKKKINPFA HLPFGIGKRM CIGRRLAELQ 501 550 ENSP00000216862/1-514 LHLALCWIVR KYDIQATDNE PVEMLHSGTL V--PSRELP- -IAFC----Q ENSBTAP00000003588/1-448 -------IVR KYDVVATDLE PVETLHLGNL V--PGRQLP- -VAFC----Q ENSTTRP00000003602/1-514 LHLALCWIVR KYDIVATDKE PVEMLHLGIL V--PSRQLP- -IAFY----Q bmy_00254T0/1-551 LHLALCWIVR KYDMVATDKE PVEMLHLGIL VHFDCGKTPH ELSYFSLKTN BACU011311/1-514 LHLALCWIVR KYDIVATDKE PVEMLHLGIL V--PSRQLP- -IAFY----Q 551 600 ENSP00000216862/1-514 R ENSBTAP00000003588/1-448 R ENSTTRP00000003602/1-514 R bmy_00254T0/1-551 R BACU011311/1-514 R