KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:35 2014 Check: 00 .. Name: ENSP00000345793/1-977 Len: 1005 Check: 9337 Weight: 1.00 Name: ENSBTAP00000003608/1-976 Len: 1005 Check: 117 Weight: 1.00 Name: bmy_00999T0/1-977 Len: 1005 Check: 1315 Weight: 1.00 Name: ENSTTRP00000003153/1-989 Len: 1005 Check: 8571 Weight: 1.00 Name: BACU013406/1-967 Len: 1005 Check: 3943 Weight: 1.00 // 1 50 ENSP00000345793/1-977 MERQKRKADI EKGLQF-IQS TLPLKQEEYE AFLLKLVQNL FAEGNDLFRE ENSBTAP00000003608/1-976 MERQRRKADI EKGLQF-IQS TLPLKQEEYE AFLLKLVQNL FAEGNDLFRE bmy_00999T0/1-977 ---------- LASFSFSCRS TLPLKQEEYE AFLLKLVQNL FAEGNDLFRE ENSTTRP00000003153/1-989 MERQRRKADI EKGLQF-IQS TLPLKQEEYE AFLLKLVQNL FAEGNDLFRE BACU013406/1-967 MERQRRKADI EKGLQF-IQS TLPLKQEEYE AFLLKLVQNL FAEGNDLFRE 51 100 ENSP00000345793/1-977 KDYKQALVQY MEGLNVADYA ASDQVALPRE LLCKLHVNRA ACYFTMGLYE ENSBTAP00000003608/1-976 KDYKQALVQY MEGLNVADYA ASDQVALPRE LLCKLHVNRA ACYFTMGLYE bmy_00999T0/1-977 KEYKQALVQY VEGLNVADYA ASDQVALPRE LLCKLHVNRA ACYFTMGLYE ENSTTRP00000003153/1-989 KDYKQALVQY VEGLNVADYA ASDQVALPRE LLCKLHVNRA ACYFTMGLYE BACU013406/1-967 KEYKQALVQY VEGLNVADYA ASDQVALPRE LLCKLHVNRA ACYFTMGLYE 101 150 ENSP00000345793/1-977 KALEDSEKAL GLDSESIRAL FRKARALNEL GRHKEAYECS SRCSLALPHD ENSBTAP00000003608/1-976 KALEDSEKAL GLDSENIRAL FRKARALTEL GRHKEAYACS SRCSLALPHD bmy_00999T0/1-977 KALEDSEKAL GLDGDNIRAL FRKARALTEL GRHKEAYACS SRCSLALPHD ENSTTRP00000003153/1-989 KALEDSEKAL GLDGDNIRAL FRKARALTEL GRHKEAYACS SRCSLALPHD BACU013406/1-967 KALEDSEKAL GLDGDNIRAL FRKARALTEL GRHKEAYACS SRCSLALPHD 151 200 ENSP00000345793/1-977 ESVTQLGQEL AQKLGLRVRK AYKRPQELET FSLLSNGTAA GVADQGTSNG ENSBTAP00000003608/1-976 ESVTQLGQEL AQKLGLRVRK AYKRPQELET FSLLSNGTAA GVADQGTSNG bmy_00999T0/1-977 ESVTHLGQEL AQKLGLRVRK AYKRPQELET FSLLSNGTAA GVADQGTSNG ENSTTRP00000003153/1-989 ESVTHLGQEL AQKLGLRVRK AYKRPQELET FSLLSNGTAA GVADQGSSNG BACU013406/1-967 ESVTHLGQEL AQKLGLRVRK AYKRP----- ---------- ----QGTSNG 201 250 ENSP00000345793/1-977 LGSIDDIET- ---------- -----DCYVD PRGSPALLPS TPTMPLFPHV ENSBTAP00000003608/1-976 LGSIDDIET- ---------- -----DCYVD LRGSPAPLPS TPTMPLFPHV bmy_00999T0/1-977 LGSIDDIET- ---------- -----DCYLD LRGSPAPLPS PPPMPLFPHV ENSTTRP00000003153/1-989 LGSIDDIETG SVPDLRGRVE MGTPGDCYMD LRGSPAPLPS PPPMPLFPHV BACU013406/1-967 LGSIDDIET- ---------- -----DCYLD LRDSPAPLPS PPPMPLFPHV 251 300 ENSP00000345793/1-977 LDLLAPLD-S SRTLPSTDSL DDFSDGDVFG PELDTLLDSL SLVQGGLSGS ENSBTAP00000003608/1-976 LDLLAPLDSS SRALPGTESL DDFSDGDVFG PELDTLLDSL SLVQGGLPGG bmy_00999T0/1-977 LDLLAPLDSS SGALPGTESL DDFSDGDVFG PELDTLLDSL SLVQGGLPGS ENSTTRP00000003153/1-989 LDLLAPLDSS SGALPGTESL DDFSDGDVFG PELDTLLDSL SLVQGGLPGS BACU013406/1-967 LDLLAPLDSS SGALPGTESL DDFSDGDVFG PELDTLLDSL SLVQGGLPGS 301 350 ENSP00000345793/1-977 GVPSELPQLI PVFPGGTPLL PPVVGGSIPV SSPLPPASFG LVMDPSKKLA ENSBTAP00000003608/1-976 GVPSELPQLI PVFPGGTPLL PPVVGGSIPV SSPLPPASFG LVVDPSKKLA bmy_00999T0/1-977 GMPSELPQLI PVFPGGTPLL PPVVGGSIPV SSPLPPASFG LVMDPSKKLA ENSTTRP00000003153/1-989 GVPSELPQLI PVFPGGTPLL PPVVGGSIPV SSPLPPASFG LVMDPSKKLA BACU013406/1-967 GVPSELPQLI PVFPGGTPLL PPVVGGSIPV SSPLPPASFG LVMDPSKKLA 351 400 ENSP00000345793/1-977 ASVLDALDPP GPTLDPLDLL PYSETRLDAL DSFGSTRGSL DKPDSFMEET ENSBTAP00000003608/1-976 ASVLDALEPP GSGLDSLDLL PYSETRLDAL DSFGSSRGSL DKPSSFLEDT bmy_00999T0/1-977 ASVLDALDPP GSALDSLDLL PYSETRLDTL DSFGSTRGSL DKPSSFMEEA ENSTTRP00000003153/1-989 ASVLDALDPP GSALDSLDLL PYSETRLDTL DSFGSTRGSL DKPSSFMEEA BACU013406/1-967 ASVLDALDPP GSALDSLDLL PYSETRLDAL DSFGSTRGSL DKPSSFMEEA 401 450 ENSP00000345793/1-977 NSQDHRPPSG AQKPAPS--- -------PEP CMPNTALLIK NPLAATHEFK ENSBTAP00000003608/1-976 NSQDHRPSSG TQKPAPS--- -------PEP SMPNTALLIK NPLAATHEFK bmy_00999T0/1-977 NSQDHRPLSG TQKPAPSVSD SASVGAQPEP SMPNTALLIK NPLAATHEFK ENSTTRP00000003153/1-989 DSQDHRPLSG TQRPAPS--- -------PEP SMPNTALLIK NPLAATHEFK BACU013406/1-967 NSQDHRPLSG TQKPAPSVSG SASIGAQPEP SMPNTALLIK NPLAATHEFK 451 500 ENSP00000345793/1-977 QACQLCYPKT GPRAGDYTYR EGLEHKCKRD ILLGRLRSSE DQTWKRIRPR ENSBTAP00000003608/1-976 QACQLCYPKT GPRAGDYTYR EGLEHKCKRD MLLGRLRSAE DQTWKRIRPR bmy_00999T0/1-977 QACQLCYPKT GPRAGDYTYR EGLEHKCKRD ILLGRLRSSE DQTWKRIRPR ENSTTRP00000003153/1-989 QACQLCYPKT GPRAGDYTYR EGLEHKCKRD ILLGRLRSSE DQTWKRIRPR BACU013406/1-967 QACQLCYPKT GPRAGDYTYR EGLEHKCKRD ILLGRLRSSE DQTWKRIRPR 501 550 ENSP00000345793/1-977 PTKTSFVGSY YLCKDMINKQ DCKYGDNCTF AYHQEEIDVW TEERKGTLNR ENSBTAP00000003608/1-976 PTKTSFVGSY YLCKDMINKQ DCKYGDNCTF AYHQEEIDVW TEERKGTLNR bmy_00999T0/1-977 PTKTSFVGSY YLCKDMINKQ DCKYGDNCTF AYHQEEIDVW TEERKGTLNR ENSTTRP00000003153/1-989 PTKTSFVGSY YLCKDMI-KQ DCKYGD--CF AYHQEEIDVW TEERKGTLNR BACU013406/1-967 PTKTSFVGSY YLCKDMINKQ DCKYGDNCTF AYHQEEIDVW TEERKGTLNR 551 600 ENSP00000345793/1-977 DLLFDPLGGV KRGSLTIAKL LKEHQGIFTF LCEICFDSKP RIISKGTKDS ENSBTAP00000003608/1-976 DLLFDPLGGV KRGSLTIAKL LKEHQGIFTF LCEICFDSKP RIISKGTKDS bmy_00999T0/1-977 DLLFDPLGGV KRGSLTIAKL LKEHQGIFTF LCEICFDSKP RIISKGTKDS ENSTTRP00000003153/1-989 DLLFDPLGGV KRGSLTIAKL LKEHQGIFTF LCEICFDSKP RIISKGTKDC BACU013406/1-967 DLLFDPLGGV KRGSLTIAKL LKEHQGIFTF LCEICFDSKP RIISKGTKDS 601 650 ENSP00000345793/1-977 PSVCSNLAAK HSFYNNKCLV HIVRSTSLKY SKIRQFQEHF QFDVCRHEVR ENSBTAP00000003608/1-976 PSVCSNLAAK HSFYNNKCLV HIVRSTSLKY SKVRQFQEHF QFDVCRHEVR bmy_00999T0/1-977 PSVCSNLAAK HSFYNNKCLV HIVRSTSLKY SKVRQFQEHF QFDVCRHEVR ENSTTRP00000003153/1-989 PSVCSNLAAK HSFYNNKCLV HIVRSTSLKY SKVRQFQEHF QFDVCRHEVR BACU013406/1-967 PSVCSNLAAK HSFYNNKCLV HIVRSTSLKY SKVRQFQEHF QFDVCRHEVR 651 700 ENSP00000345793/1-977 YGCLREDSCH FAHSFIELKV WLLQQYSGMT HEDIVQESKK YWQQMEAHAG ENSBTAP00000003608/1-976 YGCLREDSCH FAHSFIELKV WLLQQYSGMT HEDIVQESKK YWQQMEAHTG bmy_00999T0/1-977 YGCLREDSCH FAHSFIELKV WLLQQYSGMT HEDIVQESKK YWQQMEAHAG ENSTTRP00000003153/1-989 YGCLREDSCH FAHSFIELKV WLLQQYSGMT HEDIVQESKK YWQQVEAHAG BACU013406/1-967 YGCLREDSCH FAHSFIELKV WLLQQYSGMT HEDIVQESKK YWQQMEAHAG 701 750 ENSP00000345793/1-977 KASSSMGAPR THGPSTFDLQ MKFVCGQCWR NGQVVEPDKD LKYCSAKARH ENSBTAP00000003608/1-976 KASSSLGAPR THGPSTFDLQ MKFVCGQCWR NGQVVEPDKD LKYCSAKARH bmy_00999T0/1-977 KASSSLGAPR THGPSTFDLQ MKFVCGQCWR NGQVVEPDKD LKYCSAKARH ENSTTRP00000003153/1-989 KASSSLGAPR THGPSTFDLQ MKFVCGQCWR NGQVVEPDKD LKYCSAKARH BACU013406/1-967 KASSSLGAPR THGPSTFDLQ MKFVCGQCWR NGQVVEPDKD LKYCSAKARH 751 800 ENSP00000345793/1-977 CWTKERRVLL VMSKAKRKWV SVRPLPSIRN FPQQYDLCIH AQNGRKCQYV ENSBTAP00000003608/1-976 CWTKERRVLL VMSKAKRKWV SVRPLPSIRN FPQQYDLCIH AQNGRKCQYV bmy_00999T0/1-977 CWTKERRVLL VMSKAKRKWV SVRPLPSIRN FPQQYDLCIH AQNGRKCQYV ENSTTRP00000003153/1-989 CWTKERRVLL VMSKAKRKWV SVRPLPSIRN FPQQYDLCIH AQNGRKCQYV BACU013406/1-967 CWTKERRVLL VMSKAKRKWV SVRPLPSIRN FPQQYDLCIH AQNGRKCQYV 801 850 ENSP00000345793/1-977 GNCSFAHSPE ERDMWTFMKE NKILDMQQTY DMWLKKHNPG KPGEGTPISS ENSBTAP00000003608/1-976 GNCSFAHSPE ERDMWTFMKE NKILDMQQTY DMWLKKHNPG KPGEGTPVGS bmy_00999T0/1-977 GNCSFAHSPE ERDMWTFMKE NKILDMQQTY DMWLKKHNPG KPGEGTPISS ENSTTRP00000003153/1-989 GNCSFAHSPE ERDMWTFMKE NKILDMQQTY DMWLKKHNPG KPGEGTPISS BACU013406/1-967 GNCSFAHSPE ERDMWTFMKE NKILDMQQTY DMWLKKHNPG KPGEGTPISS 851 900 ENSP00000345793/1-977 REGEKQIQMP TDYADIMMGY HCWLCGKNSN SKKQWQQHIQ SEKHKEKVFT ENSBTAP00000003608/1-976 REGEKQIQMP TDYADIMMGY HCWLCGKNSN SKKQWQQHIQ SEKHKEKVFT bmy_00999T0/1-977 REGEKQIQMP TDYADIMMGY HCWLCGKNSN SKKQWQQHIQ SDKHKEKVFT ENSTTRP00000003153/1-989 REGEKQIQMP TDYADIMMGY HCWLCGKNSN SKKQWQQHIQ SEKHKEKVFT BACU013406/1-967 REGEKQIQMP TDYADIMMGY HCWLCGKNSN SKKQWQQHIQ SEKHKEKVFT 901 950 ENSP00000345793/1-977 SDSDASGWAF RFPMGEFRLC DRLQKGKACP DGDKCRCAHG QEELNEWLDR ENSBTAP00000003608/1-976 SDSDASGWAY RFPMGEFRLC DRLQKGKACP DGDKCRCAHG QEELNEWLDR bmy_00999T0/1-977 SDSDASGWAY RFPMGEFRLC ERLQKGKACP DGDKCRCAHG QEELNEWLDR ENSTTRP00000003153/1-989 SDSDASGWAY RFPMGEFRLC ERLQKGKACP DGDKCRCAHG QEELNEWLDR BACU013406/1-967 SDSDASGWAY RFPMGEFRLC ERLQKGKACP DGDKCRCAHG QEELNEWLDR 951 1000 ENSP00000345793/1-977 REVLKQKLAK ARKDMLLCPR DDDFGKYNFL LQEDGDLAGA TPEAPAAAAT ENSBTAP00000003608/1-976 REVLKQKLAK ARKDMLLCPR DDDFGKYNFL LQEDGNAPGA ALEAPATA-- bmy_00999T0/1-977 REVLKQKLAK ARKDMLLCPR DDDFGKYNFL LQEDGNATGA APEAPAAA-- ENSTTRP00000003153/1-989 REVLKQKLAK ARKDMLLCPR DDDFGKYNFL LQEDGNATGA APEAPAAA-- BACU013406/1-967 REVLKQKLAK ARKDMLLCPR DDDFGKYNFL LQEDGNATGA APEAPAAA-- 1001 1050 ENSP00000345793/1-977 ATTGE ENSBTAP00000003608/1-976 AGTGD bmy_00999T0/1-977 TVTGE ENSTTRP00000003153/1-989 SVTGE BACU013406/1-967 TITGE