KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:37 2014 Check: 00 .. Name: BACU001324/1-1369 Len: 1392 Check: 1955 Weight: 1.00 Name: ENSP00000343405/1-1094 Len: 1392 Check: 3050 Weight: 1.00 Name: ENSBTAP00000003616/1-1094 Len: 1392 Check: 8987 Weight: 1.00 Name: bmy_08681T0/1-1094 Len: 1392 Check: 6746 Weight: 1.00 Name: ENSTTRP00000011444/1-1091 Len: 1392 Check: 8090 Weight: 1.00 // 1 50 BACU001324/1-1369 MTRRESSACA ASGFLGACLL QTWQKEWPWS VGVELPGATR RPPRNRKWSL ENSP00000343405/1-1094 ---------- ---------- --------MN VNQSVPPV-- -PP------- ENSBTAP00000003616/1-1094 ---------- ---------- --------MN VNQSAPPV-- -PP------- bmy_08681T0/1-1094 ---------- ---------- --------MN LNQSAPPV-- -PP------- ENSTTRP00000011444/1-1091 ---------- ---------- --------MN VNQSAPPV-- -PP------- 51 100 BACU001324/1-1369 GALTLGTKSN LDLEPGEEWL REPQPAYLGH HQSSYGGQPG STTAPTSYGA ENSP00000343405/1-1094 ---------- ---------F GQPQPIYPGY HQSSYGGQSG STAPAIPYGA ENSBTAP00000003616/1-1094 ---------- ---------F GQPQPVYPGY HQSSYGGQPG STAAPTPYGA bmy_08681T0/1-1094 ---------- ---------F GQPQPAYLGH HQSSYGGQPG STTAPTSYGA ENSTTRP00000011444/1-1091 ---------- ---------F GQPQPVYLGH HQSSYGGQPG PTTAPTSYGA 101 150 BACU001324/1-1369 YNGPVPGYQQ TPPPGVSRAP PSSGAPPAST AQGPCGQTAY GQFGQGDVQN ENSP00000343405/1-1094 YNGPVPGYQQ TPPQGMSRAP PSSGAPPAST AQAPCGQAAY GQFGQGDVQN ENSBTAP00000003616/1-1094 YNGPVPGYQQ TPPPGVSRAP ASSGAPPAST AQGPCGQTAY GQFGQGDVQN bmy_08681T0/1-1094 YNGPVPGYQQ TPPPGVSRAP PSSGAPPAST AQGPCGQTAY GQ-------- ENSTTRP00000011444/1-1091 YNGPVPGYQQ TPPPGVSRAP PSSGAPPAST AQGPCGQTAY GQFGQGDVQN 151 200 BACU001324/1-1369 GPSSTVQMQR LPGYQPFGSA VLAPVVSQPA VLQPYGPPPT SAQVTAQLAG ENSP00000343405/1-1094 GPSSTVQMQR LPGSQPFGS- PLAPVGNQPP VLQPYGPPPT SAQVATQLSG ENSBTAP00000003616/1-1094 GPSSGVQMQR LPGSQPFASA PLAPVVSQPA VLQPYGPPPT SAQVTAQLAG bmy_08681T0/1-1094 ---------- LPGYQPFGSA ILAPVVSQPA VLQPYGPPPT SAQVTAQLAG ENSTTRP00000011444/1-1091 GPSSTVQMQR LPGYQPFGSA ILAPVVSQPA VLQPYGPPPT SAQVTAQLAG 201 250 BACU001324/1-1369 MQISGAVAPA SPPSGLGYGP PTSLASASGS FPNSGLYGSY PQGQAPPLGQ ENSP00000343405/1-1094 MQISGAVAPA PPSSGLGFGP PTSLASASGS FPNSGLYGSY PQGQAPPLSQ ENSBTAP00000003616/1-1094 MQISGAVAPA PPASGLGYGS PTSLASASGS FPNSGLYGSY PQGQAPPLG- bmy_08681T0/1-1094 MQISGAVAPA SPPSGLGYGP PTSLASASGS FPNSGLYGSY PQGQAPPLGQ ENSTTRP00000011444/1-1091 MQISGTVAPA SPPSGLGYGP PTSLASASGS FPNSGLYGSY PQ-QAPPLGQ 251 300 BACU001324/1-1369 AQGHPGAQPP QRSVPPQASS FTPPASGGPR MPSMTGPLLP GQSFGGPPVS ENSP00000343405/1-1094 AQGHPGIQTP QRSAPSQASS FTPPASGGPR LPSMTGPLLP GQSFGGPSVS ENSBTAP00000003616/1-1094 -QGHPGAQPP QRSVPPQASS FTPPASGGPR MPSMTGPLLP GQSFGGPPVS bmy_08681T0/1-1094 AQGHPGAQPP QRSVPLQASS FTPPASGGPR MPSMTGPLLP GQSFGGPPVS ENSTTRP00000011444/1-1091 AQGHPGTQPP QRSVPLQASS FTPPAS-GPR M-SMTLP-LP GQSF-GPPVS 301 350 BACU001324/1-1369 QPNHVSSPAP QVLPPGTQMT GPPGPPPPPM HSSQQPGYQL QQNGSYGPTR ENSP00000343405/1-1094 QPNHVSSP-P QALPPGTQMT GPLGPL-PPM HSPQQPGYQP QQNGSFGPAR ENSBTAP00000003616/1-1094 QPNHVSSPPP QALPPGTQMT GPPGPP-PPM HSSQQPGYQL QQNGSFGPAR bmy_08681T0/1-1094 QPNHVSSPAP QVLPPGTQMT GPPGPPPPPM HSSQQPGYQL QQNGSYGPXR ENSTTRP00000011444/1-1091 QPNHVSSPAP QALPPGTQMT GPPGPPLPPM HSSQQPGYQL QQNGSFGPTR 351 400 BACU001324/1-1369 GPQSNYGSPY PGAAAFGSQP GPPQPLPPKR LDPDAIPS-- ---------- ENSP00000343405/1-1094 GPQSNYGGPY PAAPTFGSQP GPPQPLPPKR LDPDAIPS-- ---------- ENSBTAP00000003616/1-1094 GPQSNYGSPY PGAATFGSQP GPPQPLPPKR LDPDAIPS-- ---------- bmy_08681T0/1-1094 GPQSNYGSPY PGAAAFGSQP GPPQPLPPKR LDPDAIPSPQ LNELPPQQKT ENSTTRP00000011444/1-1091 GPQSNYGSPY PGAATFGSQP GPPQPLPPKR LDPDAIPS-- ---------- 401 450 BACU001324/1-1369 ---------- -PIQVIEDDR NNRGSEPFVT GVRGQVPPLV TTNFLVKDQG ENSP00000343405/1-1094 ---------- -PIQVIEDDR NNRGTEPFVT GVRGQVPPLV TTNFLVKDQG ENSBTAP00000003616/1-1094 ---------- -PIQVIEDDR NNRGSEPFVT GVRGQVPPLV TTNFLVKDQG bmy_08681T0/1-1094 RHRIDPDAIP SPIQVIEDDR NNRGSEPFVT GVRGQVPPLV TTNFLVKDQG ENSTTRP00000011444/1-1091 ---------- -PIQVIEDDR NNRGSEPFVT GVRGQVPPLV TTNFLVKDQG 451 500 BACU001324/1-1369 NASPRYIRCT SYNIPCTSDM AKQAQVPLAA VIKPLARLPP EEASPYVVDH ENSP00000343405/1-1094 NASPRYIRCT SYNIPCTSDM AKQAQVPLAA VIKPLARLPP EEASPYVVDH ENSBTAP00000003616/1-1094 NASPRYIRCT SYNIPCTSDM AKQAQVPLAA VIKPLARLPP EEASPYVVDH bmy_08681T0/1-1094 NASPRYIRCT SYNIPCTSDM AKQAQVPLAA VIKPLARLPP EEASPYVVDH ENSTTRP00000011444/1-1091 NASPRYIRCT SYNIPCTSDM AKQAQVPLAA VIKPLARLPP EEASPYVVDH 501 550 BACU001324/1-1369 GESGPLRCNR CKAYMCPFMQ FVEGGRRFQC CFCSCINDVP PQYFQHLDHT ENSP00000343405/1-1094 GESGPLRCNR CKAYMCPFMQ FIEGGRRFQC CFCSCINDVP PQYFQHLDHT ENSBTAP00000003616/1-1094 GESGPLRCNR CKAYMCPFMQ FVEGGRRFQC CFCSCINDVP PQYFQHLDHT bmy_08681T0/1-1094 GESGPLRCNR CKAYMCPFMQ FVEGGRRFQC CFCSCINDVP PQYFQHLDHT ENSTTRP00000011444/1-1091 GESGPLRCNR CKAYMCPFMQ FVEGGRRFQC CFCSCINDVP P-YFQHLDHT 551 600 BACU001324/1-1369 GKRVDAYDRP ELSLGSYEFL ATVDYCKNNK FPSPPAFIFM IDVSYNAIRS ENSP00000343405/1-1094 GKRVDAYDRP ELSLGSYEFL ATVDYCKNNK FPSPPAFIFM IDVSYNAIRT ENSBTAP00000003616/1-1094 GKRVDAYDRP ELSLGSYEFL ATVDYCKNNK FPIPPAFIFM IDVSYNAVRS bmy_08681T0/1-1094 GKRVDAYDRP ELSLGSYEFL ATVDYCKNNK FPSPPAFIFM IDVSYNAIRS ENSTTRP00000011444/1-1091 GKRVDAYDRP ELSLGSYEFL ATVDYCKNNK FPSPPAFIFM IDVSYNAIRS 601 650 BACU001324/1-1369 GLVRLLCEEL KSLLDFLPRE GGAEESAVRV GFVTYNKVLH FYNVKSSLAQ ENSP00000343405/1-1094 GLVRLLCEEL KSLLDFLPRE GGAEESAIRV GFVTYNKVLH FYNVKSSLAQ ENSBTAP00000003616/1-1094 GLVRLLCEEL KSLLDFLPRE GGAEESAIRV GFVTYNKVLH FYNVKSSLAQ bmy_08681T0/1-1094 GLVRLLCEEL K--------E GGAEESAVRV GFVTYNKVLH FYNVKSSLAQ ENSTTRP00000011444/1-1091 GLVRLLCEEL KSLLDFLPRE GGAEESAIRV GFVTYNKVLH FYNVKSSLAQ 651 700 BACU001324/1-1369 PQMMVVSDVG DMFVPLLDGF LVNVNESQAV ITSLLDQIPE MFADTRETET ENSP00000343405/1-1094 PQMMVVSDVA DMFVPLLDGF LVNVNESRAV ITSLLDQIPE MFADTRETET ENSBTAP00000003616/1-1094 PQMMVVSDVG DMFVPLLDGF LVNVSESRAV ITSLLDQIPE MFADTRETET bmy_08681T0/1-1094 PQMMVVSDVG DMFVPLLDGF LVNVNESQAV ITSLLDQIPE MFADTRETET ENSTTRP00000011444/1-1091 PQMMVVSDVG DMFVPLLDGF LVNVNESQAV ITSLLDQIPE MFADTRETET 701 750 BACU001324/1-1369 VFAPVIQAGM EALKAAECAG KLFLFHTSLP IAEAPGKLKN RDDRKLINTD ENSP00000343405/1-1094 VFVPVIQAGM EALKAAECAG KLFLFHTSLP IAEAPGKLKN RDDRKLINTD ENSBTAP00000003616/1-1094 VFAPVVQAGM EALKAAECAG KLFLFHTSLP IAEAPGKLKN RDDRKLINTD bmy_08681T0/1-1094 VFAPVIQAGM EALKAAECAG KLFLFHTSLP IAEAPGKLKN RDDRKLINTD ENSTTRP00000011444/1-1091 VFAPVIQAGM EALKAAECAG KLFLFHTSLP IAEAPGKLKN RDDRKLINTD 751 800 BACU001324/1-1369 KEKTLFQPQT GAYQTLAKEC VAQGCCVDLF LFPNQYVDVA TLSVVPQLTG ENSP00000343405/1-1094 KEKTLFQPQT GAYQTLAKEC VAQGCCVDLF LFPNQYVDVA TLSVVPQLTG ENSBTAP00000003616/1-1094 KEKTLFQPQS GAYQTLAKEC VAQGCCVDLF LFPNQYVDVA TLSVVPQLTG bmy_08681T0/1-1094 KEKTLFQPQT GAYQTLAKEC VAQGCCVDLF LFPNQYVDVA TLSVVPQLTG ENSTTRP00000011444/1-1091 KEKTLFQPQT GAYQTLAKEC VAQGCCVDLF LFPNQYVDVA TLSVVPQLTG 801 850 BACU001324/1-1369 GSVYKYACFQ VENDQERFLS DLRRDVQKVV GFDAVMRVRT STGIRAVDFF ENSP00000343405/1-1094 GSVYKYASFQ VENDQERFLS DLRRDVQKVV GFDAVMRVRT STGIRAVDFF ENSBTAP00000003616/1-1094 GSVYKYACFQ VENDQERFLS DLRRDVQKVV GFDAVMRVRT STGIRAVDFF bmy_08681T0/1-1094 GSVYKYACFQ VENDQERFLS DLRRDVQKVV GFDAVMRVRT STGIRAVDFF ENSTTRP00000011444/1-1091 GSVYKYACFQ VENDQERFLS DLRRDVQKVV GFDAVMRVRT STGIRAVDFF 851 900 BACU001324/1-1369 GAFYMSNTTD VELAGLDGDK TVTVEFKHDD RLNEESGALL QCALLYTSCA ENSP00000343405/1-1094 GAFYMSNTTD VELAGLDGDK TVTVEFKHDD RLNEESGALL QCALLYTSCA ENSBTAP00000003616/1-1094 GAFYMSNTTD VELAGLDGDK TVTVEFKHDD RLNEENGALL QCALLYTSCA bmy_08681T0/1-1094 GAFYMSNTTD VELAGLDGDK TVTVEFKHDD RLNEESGALL QCALLYTSCA ENSTTRP00000011444/1-1091 GAFYMNNTTD VELAGLDGDK TVTVEFKHDD RLNEENGALM QCALLYTSCA 901 950 BACU001324/1-1369 GQRRLRIHNL ALNCCTQLAD LYRNCETDTL INYMAKFAYR GVLNSPVKTV ENSP00000343405/1-1094 GQRRLRIHNL ALNCCTQLAD LYRNCETDTL INYMAKFAYR GVLNSPVKAV ENSBTAP00000003616/1-1094 GQRRLRIHNL ALNCCTQLAD LYRNCETDTL INYMAKFAYR GVLSSPVKTV bmy_08681T0/1-1094 GQRRLRIHNL ALNCCTQLAD LYRNCETDTL INYMAKFAYR GVLNSPVKTV ENSTTRP00000011444/1-1091 GQRRLRIHNL ALNCCTQLAD LYRNCETDTL INYMAKFAYR GVLSSPVKTV 951 1000 BACU001324/1-1369 RDTLITQCAQ ILACYRKNCA SPSSAGQLIL PECMKLLPVY LNCVLKSDVL ENSP00000343405/1-1094 RDTLITQCAQ ILACYRKNCA SPSSAGQLIL PECMKLLPVY LNCVLKSDVL ENSBTAP00000003616/1-1094 RDTLITQCAQ ILACYRKNCA SPSSAGQLIL PECMKLLPVY LNCVLKSEVL bmy_08681T0/1-1094 RDTLITQCAQ ILACYRKNCA SPSSAGQLIL PECMKLLPVY LNCVLKSDVL ENSTTRP00000011444/1-1091 RDTLITQCAQ ILACYRKNCA SPSSAGQLIL PECMKLLPVY LNCVLKSDVL 1001 1050 BACU001324/1-1369 QPGAEVTTDD RAYVRQLVTS MDVAETNVFF YPRLLPLVRL SAGVQSLPLR ENSP00000343405/1-1094 QPGAEVTTDD RAYVRQLVTS MDVTETNVFF YPRLLPLTKS PVESTTEPPA ENSBTAP00000003616/1-1094 QPGAEVTTDD RAYVRQLVTS MDVAETNVFF YPRLLPLTKS PIENTTEPPA bmy_08681T0/1-1094 QPGAEVTTDD RAYVRQLVTS MDVAETNVFF YPRLLPLTKS PIENTTEPPA ENSTTRP00000011444/1-1091 QPGAEVTTDD RAYVRQLVTS MDVAETNVFF YPRLLPLTKS PIENTTEPPA 1051 1100 BACU001324/1-1369 IPLNHQQFEE RLSNGDIYLL ENGLNLFLWV GASVQQGVVQ SLFGVSSFSQ ENSP00000343405/1-1094 V----RASEE RLSNGDIYLL ENGLNLFLWV GASVQQGVVQ SLFSVSSFSQ ENSBTAP00000003616/1-1094 V----RASEE RLSNGDIYLL ENGLNLFLWV GASVQQGVVQ SLFGVSSFSQ bmy_08681T0/1-1094 V----RASEE RLSNGDIYLL ENGLNLFLWV GASVQQGVVQ SLFGVSSFSQ ENSTTRP00000011444/1-1091 V----RASEE RLSNGDIYLL ENGLNLFLWV GASVQQGVVQ SLFGVSSFSQ 1101 1150 BACU001324/1-1369 ITSGLSVLPV LDNLLSKKVR GLIDSLRAQR SRYMKVDSYG KCLKNRELPT ENSP00000343405/1-1094 ITSGLSVLPV LDNPLSKKVR GLIDSLRAQR SRYMKL---- ---------- ENSBTAP00000003616/1-1094 ITSGLSVLPV LDNLLSKKVR GLIDSLRAQR SRYMKL---- ---------- bmy_08681T0/1-1094 ITSGLSVLPV LDNLLSKKVR GLIDSLRAQR SRYMKL---- ---------- ENSTTRP00000011444/1-1091 ITSGLSVLPV LDNLLSKKVQ GLIDSLRAQR SRYMKL---- ---------- 1151 1200 BACU001324/1-1369 PRLQDTATAT TEDPELLAFL SRYKFHLALE NAICDDYMTE KLWRPMHLGA ENSP00000343405/1-1094 -----TVVKQ EDKMEML--- --FKHFLVED KSLSGG---- ---------- ENSBTAP00000003616/1-1094 -----IVVKQ EDKLEML--- --FKHFLVED KSLSGG---- ---------- bmy_08681T0/1-1094 -----IVVKQ EDKLETL--- --FKHFLVED KSLSGG---- ---------- ENSTTRP00000011444/1-1091 -----IVVKQ EDKLETL--- --FKHFLVED KSLSGG---- ---------- 1201 1250 BACU001324/1-1369 VPVYRGSPSV RDWVPNNHSI ILIDDFESPQ KLAEFIDFLD KNDEEYMKYL ENSP00000343405/1-1094 ---------- ---------- ---------- --ASYVDFLC HMHKEIRQLL ENSBTAP00000003616/1-1094 ---------- ---------- ---------- --ASYVDFLC HMHKEIRQLL bmy_08681T0/1-1094 ---------- ---------- ---------- --ASYVDFLC HMHKEIRQLL ENSTTRP00000011444/1-1091 ---------- ---------- ---------- --ASYVDFLC HMHKEIRQLL 1251 1300 BACU001324/1-1369 AYKQPGGITN QFLLDSLKQR EWGVNDPLLP NYLNGFECFV CDHELARLDA ENSP00000343405/1-1094 S--------- ---------- ---------- ---------- ---------- ENSBTAP00000003616/1-1094 S--------- ---------- ---------- ---------- ---------- bmy_08681T0/1-1094 S--------- ---------- ---------- ---------- ---------- ENSTTRP00000011444/1-1091 S--------- ---------- ---------- ---------- ---------- 1301 1350 BACU001324/1-1369 EKAHAASPGD IPVPEPHIAQ PSHMDCPVPT PGFGSVEEIP ENDSWKEMWL ENSP00000343405/1-1094 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003616/1-1094 ---------- ---------- ---------- ---------- ---------- bmy_08681T0/1-1094 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011444/1-1091 ---------- ---------- ---------- ---------- ---------- 1351 1400 BACU001324/1-1369 QDYWQGLDQG EALTAMIHNN ETLQRKFWDY LTEIFMKRNQ NL ENSP00000343405/1-1094 ---------- ---------- ---------- ---------- -- ENSBTAP00000003616/1-1094 ---------- ---------- ---------- ---------- -- bmy_08681T0/1-1094 ---------- ---------- ---------- ---------- -- ENSTTRP00000011444/1-1091 ---------- ---------- ---------- ---------- --