KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:41 2014 Check: 00 .. Name: ENSP00000375844/1-672 Len: 805 Check: 3213 Weight: 1.00 Name: ENSBTAP00000003637/1-464 Len: 805 Check: 7266 Weight: 1.00 Name: BACU011034/1-641 Len: 805 Check: 3949 Weight: 1.00 Name: bmy_14793T0/1-671 Len: 805 Check: 3423 Weight: 1.00 Name: ENSTTRP00000000127/1-697 Len: 805 Check: 6136 Weight: 1.00 // 1 50 ENSP00000375844/1-672 ---------- ---------- ---------- ---------- -------MRA ENSBTAP00000003637/1-464 ---------- ---------- ---------- ---------- ---------- BACU011034/1-641 ---------- ---------- ---------- ---------- ---------- bmy_14793T0/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000127/1-697 RAGTGAGWYC GSSGAGGPGR TGEARGRRAA GSRSLRGCGT GAGSRWELGV 51 100 ENSP00000375844/1-672 GRGATPAREL FRDAAFPAAD SSLFCDLSTP LAQFREDITW RRPQEICATP ENSBTAP00000003637/1-464 --MRAPAKEL FRDAAFPASD SSLFSSFSTP LAQFREEITW RRPQEICAMP BACU011034/1-641 --MRAPAREL FRDAAFPASD SSLFSSFSTP LAQFREEITW RRPQEICAMP bmy_14793T0/1-671 ---------- ---------- ---------- ----REEITW RRPQEICATP ENSTTRP00000000127/1-697 PKMRAPAREL FRDAAFPASD SSLFSSFSTP LAQFREEITW RRPQEICATP 101 150 ENSP00000375844/1-672 RLFPDDPREG QVKQGLLGDC WFLCACAALQ KSRHLLDQVI PPGQPSWADQ ENSBTAP00000003637/1-464 RLFAGSPQEG QVKQGLLGDC WFLCACAALQ KSRHLLDQVF PPGQPSWLDQ BACU011034/1-641 QLFADRAQEG QVKQGLLGDC WFLCACAALQ KSQHLLDQVF PPGQPSWLDQ bmy_14793T0/1-671 QLFADRAQEG QVKQGLLGDC WFLCACAALQ KSQHLLDQVF PPGQPSWLDQ ENSTTRP00000000127/1-697 QLFADRAQEG QVKQGLLGDC WFLCACAALQ KSQHLLDQVF PPGQPSWLDQ 151 200 ENSP00000375844/1-672 EYRGSFTCRI WQFGRWVEVT TDDRLPCLAG RLCFSRCQRE DVFWLPLLEK ENSBTAP00000003637/1-464 TYRGSFTCRV WQFGRWVEVT VDDRLPCLAG RLCFSRCQRE DVFWLPLLEK BACU011034/1-641 TYRGSFTCRV WQFGRWVEVT IDDRLPCLAG RLCFSRCQRE DVFWLPLLEK bmy_14793T0/1-671 TYHGSFTCRV WQFGRWVEVT IDDRLPCLAG RLCFSRCQRE DVFWLPLLEK ENSTTRP00000000127/1-697 TYRGSFTCRV WQFGRWVEVT IDDRLPCLAG RLCFSRCQRE DVFWLPLLEK 201 250 ENSP00000375844/1-672 VYAKVHGSYE HLWAGQVADA LVDLTGGLAE RWNLKGVAGS GGQQDRPGRW ENSBTAP00000003637/1-464 VYAKVHGSYE QLWAGQVADA LVDLTGGLAE RWNLKDVAGS SGQQDGPRGA BACU011034/1-641 VYAKIYGSYE HLWAGQVADA LVDLTGGLAE RWNLKDMAGT SGQQDRPRGA bmy_14793T0/1-671 VYAKVYGSYE HLWAGQVADA LVDLTGGLAE RWNLKDMAGT SGQRDRPRGA ENSTTRP00000000127/1-697 VYAKVYGSYE HLWAGQVADA LVDLTGGLAE RWNLKDMAGA SGQQDRPRGA 251 300 ENSP00000375844/1-672 EHRTCRQLLH LKDQCLISCC VLSPRAGARE LGEFHAFIVS DLRELQGQAG ENSBTAP00000003637/1-464 ERRTCRQLLS LKDRCLLSCS VLSPRTGTRE LGEFHAFIVS DLRELQDLAG BACU011034/1-641 ERRTCRQLLS LKDRCLLSCS VLSPRTGTRA LGEFHAFIIA DLQELRGRAG bmy_14793T0/1-671 ERRTCRQLLS LKDRCLLSCS VLSPRTGTRA LGEFHAFIVS DLQELRGRAG ENSTTRP00000000127/1-697 ERRTCRQLLS LKDRGLLSCS VLSPRTGTRA LGEFHAFIVS DLQELRDRAG 301 350 ENSP00000375844/1-672 QCILLLRIQN PWGRRCWQGL WREGGEGWSQ VDAAVASELL SQLQEGEFWV ENSBTAP00000003637/1-464 RSVLLLRIQN PWGRRCWQGP WREGGEGWSQ VEPAAQAELL SQLQDGEFWV BACU011034/1-641 QSILLLRIQN PWGRRCWQGP WREGGEGWSR VEPAAQSELL SQLQEGEFWV bmy_14793T0/1-671 QSILLLRIQN PWGRRCWQGP WREGGEGWSR VESAAQSELL LQLQEGEFWV ENSTTRP00000000127/1-697 QSILLLRIQN PWGRRCWQGP WREGGEGWNR VESAAQSELL SQLQEGEFWV 351 400 ENSP00000375844/1-672 EEEEFLREFD ELTVGYPVTE AGHLQSLYTE RLLCHTRALP GAWVKGQSAG ENSBTAP00000003637/1-464 EEDEFLREFD EVTIGFPSTE AGHLQSLHSG KVLCHTQELP GAWVKGQSAG BACU011034/1-641 EEDEFLREFD EVTIGFPITE AGHLQSLYSG RALCHTQELP GAWVKGQSAG bmy_14793T0/1-671 EEDEFLREFD EVTIGFPITE AGHLQSLYSG RALCHTQELP GAWVKGQSAG ENSTTRP00000000127/1-697 EEDEFLREFD EVTIGFPISE AGHLQSLCSG RALCHTQELP GAWVKGQSAG 401 450 ENSP00000375844/1-672 GCRNNSGFPS NPKFWLRVSE PSEVYIAVLQ RSRLHAADWA GRARALVGDS ENSBTAP00000003637/1-464 GCRNNSGFPS NPKFWLRVCE PSEVYVGVLQ RPRVRAAGR- ---------- BACU011034/1-641 GCRNNSGFPS NPKFWLRVCE PSEVYVAVLQ RPRLRTAGH- ---------- bmy_14793T0/1-671 GCRNNSGFPS NPKFWLRVCE PSEVYVAVLQ RPQLRTAGH- ---------- ENSTTRP00000000127/1-697 GCRNYSGFPS NPKFWLRVCE PSEVYMAVLQ RPRLRTAGH- ---------- 451 500 ENSP00000375844/1-672 HTSWSPASIP GKHYQAVGLH LWKVEKRRVN LPRVLSMPPV AGTACHAYDR ENSBTAP00000003637/1-464 ---------P GRDYQAVGLH LWKVEKRRVN LPRALSAPPV AGTACHAYDR BACU011034/1-641 ---------P GRDYQAVGLH LWKVVKRRVS LPRALSAPPV AGTACHAYDR bmy_14793T0/1-671 ---------P GRDYQAVGLH LWKVEKRRVS LPRALSAPPV AGTACHAYDR ENSTTRP00000000127/1-697 ---------P GRDYQAVGLH IWKVEKRRVS LPKALSAPPV AGTACHAYDR 501 550 ENSP00000375844/1-672 EVHLRCELSP GYYLAVPSTF LKDAPGEFLL RVFSTGRVSL SAIRAVAKNT ENSBTAP00000003637/1-464 EVHLRCELSP GFYLAVPSTF LKDVPGQFLL RVFSTG---- ---------- BACU011034/1-641 EVHLRCELAP GYYLAVPSTF LKDVPGQFLL RVFSSGRVSL SAIQPAAQSA bmy_14793T0/1-671 EVHLRCELSP GYYLAVPSTF LKDVPGQFLL RVFSSGRVSL SAIQPAAQSA ENSTTRP00000000127/1-697 EVHLRCELAP GYYLAVPSTF LKDVPGRFLL RVFSSGRVCL SAIQPAAQSA 551 600 ENSP00000375844/1-672 TPGAALPAGE WGTVQLRGSW RVGQTAGGSR NFASYPTNPC FPFSVPEGPG ENSBTAP00000003637/1-464 ---------- ---------- ---------- ---------- ---------- BACU011034/1-641 APREALPVGE WETVRLRGSW RVGRTAGGSR NFASYPTNPR FP-------- bmy_14793T0/1-671 APREALPVGE WETVRLRGFW RVGRTAGGSR NFASYPANPR FPLSVPEGAG ENSTTRP00000000127/1-697 APREVLPMGE WETVRLRGSW RVGRTAGGSR NFASYPTNPR FPLSVPEGAG 601 650 ENSP00000375844/1-672 PRCVRITLHQ HCRPSDTEFH PIGFHIF--- ---------- ---------- ENSBTAP00000003637/1-464 ---------- ---------- ---------- ---------- ---------- BACU011034/1-641 ---------- ---------- ---------- ---------- ---------- bmy_14793T0/1-671 PRCVRITLRQ HSR--DHEGL PIGFHVFQAG APAPGRPGGV SRGRGGRPPR ENSTTRP00000000127/1-697 PRCVRITLRQ HCR--DHEGL PIGFHVF--- ---------- ---------- 651 700 ENSP00000375844/1-672 ---------- ---------- ---------- -----QVPEG GRSQDAPPLL ENSBTAP00000003637/1-464 ---------- ---------- ---------- ---------- ---------- BACU011034/1-641 ---------- ---------- ---------- ----PSVPAD GGGRDAPSLL bmy_14793T0/1-671 GLSASSSHTQ DSFLGFLNRF GPPAGRPPGL SLGLPQVPAD GGGRDAPSLL ENSTTRP00000000127/1-697 ---------- ---------- ---------- -----QVPAD GGGQDAPSLL 701 750 ENSP00000375844/1-672 LQEPLLSCVP HRYAQEVSRL CLLPAGTYKV VPSTYLPDTE GAFTVTIATR ENSBTAP00000003637/1-464 ---------- ---------- ---------- ---------- ---------- BACU011034/1-641 LQEPLLSCVP HCYAQEVSRL CHLSQGAYWV VPSTYLPDTE GAFTVTVETR bmy_14793T0/1-671 LQEPLLSCVP HCYAQEVSRL CHLSEGTYWI VPSTYLPDTE GAFTVTVETR ENSTTRP00000000127/1-697 LQEPLLSCVP HCYAQEVSRL CHLSEGTYWI VPSTYLPDTE GAFTVTVETR 751 800 ENSP00000375844/1-672 IDRPSIHSQE M--------- ---------- ------LGQF LQ-EVSIMAV ENSBTAP00000003637/1-464 ---------- ---------- ---------- ---------- ---------- BACU011034/1-641 IDRSSSRASS FKKPPGPDLP SVKPRDASIL NPPLSGLCPL LDTDGRGLAA bmy_14793T0/1-671 IDRRSIHSQE M--------- ---------- ------LGQL LE-EASFVAV ENSTTRP00000000127/1-697 IDRRSIHSQE M--------- ---------- ------LGQL LK-EASFVAV 801 850 ENSP00000375844/1-672 MKT-- ENSBTAP00000003637/1-464 ----- BACU011034/1-641 TRGQR bmy_14793T0/1-671 MKA-- ENSTTRP00000000127/1-697 MKA--