KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:42 2014 Check: 00 .. Name: ENSBTAP00000003645/1-729 Len: 729 Check: 1629 Weight: 1.00 Name: ENSP00000406738/1-690 Len: 729 Check: 5363 Weight: 1.00 Name: ENSTTRP00000009647/1-722 Len: 729 Check: 3896 Weight: 1.00 Name: bmy_00105T0/1-711 Len: 729 Check: 783 Weight: 1.00 Name: BACU010508/1-616 Len: 729 Check: 7740 Weight: 1.00 // 1 50 ENSBTAP00000003645/1-729 MVLTLLLSAY KLCRFFAMSG PRPDAERLAV PGPDGGGGAS QWWVAGSRRP ENSP00000406738/1-690 --------MG AVAR--AHGG LRVARARESV AG-------G RHRGAGRPGA ENSTTRP00000009647/1-722 MVLTLLLSAY KLCRFFAMSG PRSGAERLAV PGPDGSGCAG PWWAAGSPGP bmy_00105T0/1-711 MVLTLLLSAY KLCRFFAMSG PRPGAERLAV PGPDGSGCAG PWWAAGGRGP BACU010508/1-616 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000003645/1-729 RELSPGASTE VQGALERALP ELQQALSALK QAVSVRALGA GLTEVFQLVE ENSP00000406738/1-690 RAAGAAA--- ---GLVRAEA GGRRAGRGRR PGRGLPTGGG GLAAA----- ENSTTRP00000009647/1-722 -AVSPGASTE VQGALERALP ELQQALSALK QAGGVRAVGA SLAEVFQLVE bmy_00105T0/1-711 REVSPGASTE VQGALERALP ELQQALSALK QAGGVRAVGA SLAEVFQLVE BACU010508/1-616 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000003645/1-729 EAWLLPAMGR EVAQGLCDAI RLDGGLDLLL RLLQAPELET RVQAARLLEQ ENSP00000406738/1-690 ------AVGR EVAQGLCDAI RLDGGLDLLL RLLQAPELET RVQAARLLEQ ENSTTRP00000009647/1-722 EAWLLPAMGR EVAQGLCDAI RLDGGLDLLL RLLQAPELET RVQAARLLEQ bmy_00105T0/1-711 EAWLLPAMGR EVAQGLCDAI RLDGGLDLLL RLLQAPELET RVQAARLLEQ BACU010508/1-616 -------MGR EVAQGLCDAI RLDGGLDLLL RLLQAPELET RVQAARLLEQ 151 200 ENSBTAP00000003645/1-729 ILVAENRRDR VARIGLGVIL NLAKEREPVE LARSVAGILE HMFKHSEETC ENSP00000406738/1-690 ILVAEN-RDR VARIGLGVIL NLAKEREPVE LARSGSGILE HMFKHSEETC ENSTTRP00000009647/1-722 ILVAEN-RDR VARIGLGVIL NLAKEREPVE LARSVAGILE HMFKHSEETC bmy_00105T0/1-711 ILVAEN-RDR VARIGLGVIL NLAKEREPVE LARSVAGILE HMFKHSEETC BACU010508/1-616 ILVAEN-RDR VARIGLGVIL NLAKEREPVE LARSVAGILE HMFKHSEETC 201 250 ENSBTAP00000003645/1-729 QKLVTAGGLD AVLYWCRRTD QALLRHCALA LANCALHGGQ AAQRRMVEKR ENSP00000406738/1-690 QRLVAAGGLD AVLYWCRRTD PALLRHCALA LGNCALHGGQ AVQRRMVEKR ENSTTRP00000009647/1-722 QRLVAAGGLD AVLYWCRRTD PPLLRHCALA LANCALHGGQ AAQRRMVEKR bmy_00105T0/1-711 QRLVAAGGLD AVLYWCRRTD PPLLRHCALA LANCALHGGQ AAQRRMVEKR BACU010508/1-616 QRLVAAGGLD AVLYWCRRTD PPLLRHCALA LANCALHGGQ AAQRRMVEKR 251 300 ENSBTAP00000003645/1-729 AAEWLFPLAF SKEDELLRLH ACLAVAVLAT NKEVEREVER SGTLDLVEPL ENSP00000406738/1-690 AAEWLFPLAF SKEDELLSLH ACLAVAVLAT NKEVEREVER SGTLALVEPL ENSTTRP00000009647/1-722 AAEWLFPLAF S-EDEMLRLH ACLAVAVLAT NKEVEREVER SGTLALVEPL bmy_00105T0/1-711 AAEWLFPLAF S-EDELLRLH ACLAVAVLAT NKEVEREVER SGTLALVEPL BACU010508/1-616 AAEWLFPLAF S-EDELLRLH ACLAVAVLAT NKEVEREVER SGTLALVEPL 301 350 ENSBTAP00000003645/1-729 VASLDPGRFA RCMVDASDTS QGRAPDDLQR LVPLLDSSRL EAQCIGAFYL ENSP00000406738/1-690 VASLDPGRFA RCLVDASDTS QGRGPDDLQR LVPLLDSNRL EAQCIGAFYL ENSTTRP00000009647/1-722 VASLDPGRFA RCLVDASDTS QGRGPDDLQR LVPLLDSSRL EAQCIGAFYL bmy_00105T0/1-711 VASLDPGRFA RCLVDASDTS QGRGPDDLQR LVPLLDSSRL EAQCIGAFYL BACU010508/1-616 VASLDPGRFA RCLVDASDTS QGRGPDDLQR LVPLLDSSRL EAQCIGAFYL 351 400 ENSBTAP00000003645/1-729 CAEAAICFLN IKAKVFSDIG AIQSLKRLVS YSTNGTTSAL AKRALRLLGE ENSP00000406738/1-690 CAEAAIKSLQ GKTKVFSDIG AIQSLKRLVS YSTNGTKSAL AKRALRLLGE ENSTTRP00000009647/1-722 CAEAAIKSLQ GKTKVFSDIG AIQSMKRLVS YSTNGTTSAL AKRALRLLGE bmy_00105T0/1-711 CAEAAIKS-- ---------- AIQSLKRLVS YSTNGTTSAL AKRALRLLGE BACU010508/1-616 CAEAAIKSLQ GKTKVFSDIG AIQSLKRLVS YSTNGTTSAL AKRALRLLGE 401 450 ENSBTAP00000003645/1-729 EVPRRILPSV PSWKEAEVQT WLQQIGFSQY CENFREQQVD GDLLLRLTDE ENSP00000406738/1-690 EVPRPILPSV PSWKEAEVQT WLQQIGFSKY CESFREQQVD GDLLLRLTEE ENSTTRP00000009647/1-722 EVPRPILPSV ASWKEAEVQT WLQQIGFSQY CESFREQQVD GDLLLRLTDE bmy_00105T0/1-711 EVPRPILPSV ASWKEAEVQT WLQQIGFSQY CESFREQQVD GDLLLRLTDE BACU010508/1-616 EVPRPILPSV ASWKEAEVQT WLQQIGFSQY CESFREQQVD GDLLLRLTDE 451 500 ENSBTAP00000003645/1-729 ELQTDLGMKS GIIRKRFLRE LTELKTFANY ATCDRSNLAD WLGSLDPRFR ENSP00000406738/1-690 ELQTDLGMKS GITRKRFFRE LTELKTFANY STCDRSNLAD WLGSLDPRFR ENSTTRP00000009647/1-722 ELQTDLGMKS GLTRKRFFRE LTELKTFANY ATCDRSNLAD WLGSLDPRFR bmy_00105T0/1-711 ELQTDLGMKS GITRKRFFRE LTELKTFANY ATCDRSNLAD WLGSLDPRFR BACU010508/1-616 ELQTDLGMKS GITRKRFFRE LTELKTFASY ATCDRSNLAD WLGSLDPRFR 501 550 ENSBTAP00000003645/1-729 QYTYGLVSCG LDRSLLHRVS EQQLLEDCGI CLGVHRARIL TAAREMLHSP ENSP00000406738/1-690 QYTYGLVSCG LDRSLLHRVS EQQLLEDCGI HLGVHRARIL TAAREMLHSP ENSTTRP00000009647/1-722 QYTYGLVSCG LDRSLLHRVS EQQLLEDCGI HLGVHRARIL TAAREMLHSP bmy_00105T0/1-711 QYTYGLVSCG LDRSLLHRVS EQQLLEDCGI RLGVHRARIL TAAREMLHSP BACU010508/1-616 QYTYGLVSCG LDRSLLHRVS EQQLLEDCGI RLGVHRARIL TAAREMLHSP 551 600 ENSBTAP00000003645/1-729 LPCTGGKPSG DAPDVFISYR RNTGSQLASL LKVHLQLHGF SVFIDVEKLE ENSP00000406738/1-690 LPCTGGKPSG DTPDVFISYR RNSGSQLASL LKVHLQLHGF SVFIDVEKLE ENSTTRP00000009647/1-722 LPCTGCKPCG DTPDVFISYR RNSGSQLASL LKVHLQLHGF SVFIDVEKLE bmy_00105T0/1-711 LPCTGCKPSG DTPDVFISYR RNSGSQLASL LKVHLQLHGF SVFIDVEKLE BACU010508/1-616 LPCTGCKPSG DTPDVFISYR RNSGSQLASL LKVHLQLHGF SVFIDVEKLE 601 650 ENSBTAP00000003645/1-729 AGKFEDKLIQ SIMSARNFVL VLSAGALDKC MQDHDCKDWV HKEIVTALSC ENSP00000406738/1-690 AGKFEDKLIQ SVMGARNFVL VLSPGALDKC MQDHDCKDWV HKEIVTALSC ENSTTRP00000009647/1-722 AGKFEDKLIQ SIMGARNFVL VLSAGALDKC MQDHDCKDWV HKEIVTALNC bmy_00105T0/1-711 AGKFEDKLIQ SIMGARNFVL VLSAGALDKC MQDHDCKDWV HKEIVTALNC BACU010508/1-616 AGKFEDKLIQ SIMGARNFVL VLSAGALDKC MQDHDCKDWV HKEIVTALNC 651 700 ENSBTAP00000003645/1-729 GKNIVPVIDG FKWPEPQALP EDMQAVLTFN GIKWSHEYQE ATIEKIIRFL ENSP00000406738/1-690 GKNIVPIIDG FEWPEPQVLP EDMQAVLTFN GIKWSHEYQE ATIEKIIRFL ENSTTRP00000009647/1-722 GKNIVPVIDG FQWPEPQALP EDMQAVLAFN GIKWSHEYQE ATIEKIIRFL bmy_00105T0/1-711 GKNIVPVIDG FQWPEPQALP EDMRAVLTFN GIKWSHEYQE ATIEKIIRFL BACU010508/1-616 GKNIVPVIDG FQWPEPQALP EDMRAVLTFN GIKWSHEYQE ATIEKIIRFL 701 750 ENSBTAP00000003645/1-729 QGRSSRDSSA GSDTSLESAA PPGPHLTSP ENSP00000406738/1-690 QGRSSRDSSA GSDTSLEGAA PMGPT---- ENSTTRP00000009647/1-722 QGRASRDSSA GSDTSLEGAA PLGPA---- bmy_00105T0/1-711 QGRSSRDSSA GSDTSLEGAA PLGPA---- BACU010508/1-616 QGRSSRDSSA GSDTSLEGAA PLGPA----