KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:44 2014 Check: 00 .. Name: ENSTTRP00000004712/1-1182 Len: 1185 Check: 4767 Weight: 1.00 Name: ENSP00000261883/1-1184 Len: 1185 Check: 3828 Weight: 1.00 Name: ENSBTAP00000003651/1-1149 Len: 1185 Check: 4556 Weight: 1.00 Name: bmy_12705T0/1-1161 Len: 1185 Check: 497 Weight: 1.00 Name: BACU001066/1-1147 Len: 1185 Check: 9809 Weight: 1.00 // 1 50 ENSTTRP00000004712/1-1182 MVVIKACVFF FLVLEVTSLL GRQMMLTQSV RRAQPGKRTS GIFAKTADPL ENSP00000261883/1-1184 MVGTKAWVFS FLVLEVTSVL GRQTMLTQSV RRVQPGKKNP SIFAKPADTL ENSBTAP00000003651/1-1149 ---------- ---------- ----MLTQSV RRVQPGKRTS GVFAKPANLL bmy_12705T0/1-1161 ---------- ---------- ---MMLTQSV RRVQPGKRTS GIFAKPADPL BACU001066/1-1147 MVVIKACVFF FLVLEVTSLL GRQMMLTQSV RRVQPGKRTS GIFAKPADPL 51 100 ENSTTRP00000004712/1-1182 DSPGEWTTWF NIDHPGGQGD YERLDAIHFY YGHQVCPRPL RLEARTTDWI ENSP00000261883/1-1184 ESPGEWTTWF NIDYPGGKGD YERLDAIRFY YGDRVCARPL RLEARTTDWT ENSBTAP00000003651/1-1149 DSPGEWTIWF NIDHPGGQGD YERLDAIQFY YGDRVCARPL RLEARTTNWK bmy_12705T0/1-1161 DSPGEWTTWF NIDHPGGRGD YERLDAIHFY YGDRVCPRPL RLEAWTTDWI BACU001066/1-1147 DSPGEWTTWF NIDHPGGWGD YERLDAIHFY YGDRVCPRPL RLEAWTTDWI 101 150 ENSTTRP00000004712/1-1182 PAGSTGQVVH GSPLEGFWCL NREQRPGQNC FNYTVRFLCP PGSLRQDTEH ENSP00000261883/1-1184 PAGSTGQVVH GSPREGFWCL NREQRPGQNC SNYTVRFLCP PGSLRRDTER ENSBTAP00000003651/1-1149 PAGSTGQVVH GSPLEGFWCL NREQRPGQNC SNYTVRFLCP PGSLRRDTEH bmy_12705T0/1-1161 PAGSTGQVVH GNPLEGFWCL NREQRPGQNC SNYTVRFLCP PGSLRQDTEH BACU001066/1-1147 PAGSTGQVVH GNPLEGFWCL NREQRPGQNC SNYTVRFLCP PGSLRQDTEH 151 200 ENSTTRP00000004712/1-1182 SLWSPWSPWS KCSAACGHPG VQTRTRTCLA ETVSLCNDAT EEGRLCMEQA ENSP00000261883/1-1184 -IWSPWSPWS KCSAACGQTG VQTRTRICLA EMVSLCSEAS EEGQHCMGQD ENSBTAP00000003651/1-1149 SLWSPWSPWS KCSAACGHPG VQTRTRTCLA ESVSLCSEAT EEGRHCMEQA bmy_12705T0/1-1161 SLWSPWSPWS KCSAACGHPG VQTRTRTCLA ETVSLCNDAT EEGRLCMEQA BACU001066/1-1147 SLWSPWSPWS KCSAACGHPG VQTRTRTCLA ETVSLCNDAT EQGRLCMEQA 201 250 ENSTTRP00000004712/1-1182 CSACDLTCPM GQVNADCDAC MCQDFVLYGV VSLPGGAPAS GATVYILTKT ENSP00000261883/1-1184 CTACDLTCPM GQVNADCDAC MCQDFMLHGA VSLPGGAPAS GAAIYLLTKT ENSBTAP00000003651/1-1149 CSACDLTCPM GKANAECDAC MCQDFVLYGA VSLPGGAPAS GAAVYLLSKT bmy_12705T0/1-1161 CSACDLTCPM GQVNADCDAC MCQDFVLYGA LSLPGGAPAS GATVYVLTKT BACU001066/1-1147 CSACDLTCPM GQVNADCDAC MCQDFVLYGA VSLPGGAPAS GATVYILTKT 251 300 ENSTTRP00000004712/1-1182 PKLLTQTDSS GRFRVPGLCP DGKSILKITK TKFAPIRLTM PKTRLKAATI ENSP00000261883/1-1184 PKLLTQTDSD GRFRIPGLCP DGKSILKITK VKFAPIVLTM PKTSLKAATI ENSBTAP00000003651/1-1149 PKLLTQTDSS GRFRVPGLCP DGKSILKITK TKFAPIHLMV PKTRLKAATI bmy_12705T0/1-1161 PKLLTQTDSS GRFRVPGLCP DGKSILKITK TKFAPIRLTM PKTRLKAATI BACU001066/1-1147 PKLLTQTDSS GRFRVPGLCP DGKSILKITK TKFAPISLTM PKTRLKAATI 301 350 ENSTTRP00000004712/1-1182 KAEFMRAETP YIVMNPKAKA RRAGQSVSLC CKATGKPKPD KYLWYHNSTL ENSP00000261883/1-1184 KAEFVRAETP YMVMNPETKA RRAGQSVSLC CKATGKPRPD KYFWYHNDTL ENSBTAP00000003651/1-1149 RAEFVRAETP YIVMSPETKA RRAGQSVSLC CKATGKPKPD KYFWYHNNTL bmy_12705T0/1-1161 KAEFMRAETP YIVMNPKTKA RRAGQSVSLC CKATGKPKPD KYFWYHNSTL BACU001066/1-1147 KAEFMRAETP YIVMNPKTKA RRAGQSVSLC CKATGKPKPD KYFWYHNSTL 351 400 ENSTTRP00000004712/1-1182 LDPSLYKHES KLVLRNLQRD QAGEYFCKAQ SDTGAAKSHV ARLTVIAPDE ENSP00000261883/1-1184 LDPSLYKHES KLVLRKLQQH QAGEYFCKAQ SDAGAVKSKV AQLIVIASDE ENSBTAP00000003651/1-1149 LDPSLYKHDS KLVLRNLRRD QAGEYFCKAQ SDAGAAKSRI AQLTVIASDE bmy_12705T0/1-1161 LDPSLYKHES KLVLRNLQRD QAGEYFCKAQ SDAGAAKSHV ARLTVIAPDE BACU001066/1-1147 LDPSLYKHES KLVLRNLQRD QAGEYFCKAQ SDAGAAKSHV ARLTVIAPDE 401 450 ENSTTRP00000004712/1-1182 TPCNPTPESY LIQLPHDCFQ NATNSFYYDV GRCPVKTCAG QQDNGIRCQD ENSP00000261883/1-1184 TPCNPVPESY LIRLPHDCFQ NATNSFYYDV GRCPVKTCAG QQDNGIRCRD ENSBTAP00000003651/1-1149 IPCNPNPESY LIRLPHDCFQ NATNSFYYDV GRCPVKTCAG KQDNGIRCRD bmy_12705T0/1-1161 TPCNPTPESY LIQLPHDCFQ NATNSFYYDV GHCPVKTCAG QQDNGIRCQD BACU001066/1-1147 TPCNPTPESY LIQLPHDCFQ NATNSFYYDV GHCPVKTCAG QQDNGIRCQD 451 500 ENSTTRP00000004712/1-1182 AVENCCGISK TEEREIQCSG YTLPTKVAME CSCQRCTETQ SIVRGRVSAS ENSP00000261883/1-1184 AVQNCCGISK TEEREIQCSG YTLPTKVAKE CSCQRCTETR SIVRGRVSAA ENSBTAP00000003651/1-1149 AVEHCCGISK TEDREIQCSG YTLPTKVATE CSCQRCTETR RIVRGRVSAA bmy_12705T0/1-1161 AVENCCGISK TEEREIQCSG YTLPTKVATE CSCQRCTETQ TIVRGRVSAS BACU001066/1-1147 AVDNCCGISK TEEREIQCSG YTLPTKVATE CSCQRCTETQ SIVRGRVSAS 501 550 ENSTTRP00000004712/1-1182 DNGEPMRFGH VYMGNSRVSM TGYKGTFTLH VPQDTERLVL TFVDRLQKFV ENSP00000261883/1-1184 DNGEPMRFGH VYMGNSRVSM TGYKGTFTLH VPQDTERLVL TFVDRLQKFV ENSBTAP00000003651/1-1149 DNGEPLRFGH VYMGNTRVSM TGYKGTFTLH VPQDTERLVL TFVDRMQKFV bmy_12705T0/1-1161 DNGEPMRFGH VYMGNSRVSM TGYKGTFTLH VPQDTERLVL TFVDRLQKFV BACU001066/1-1147 DNGEPMRFGH VYMGNRRVSM TGYKGTFTLH VPQDTERLVL TFVDRLQKFV 551 600 ENSTTRP00000004712/1-1182 NTTKVLPFNK KGSAVFHEIK MLRRKEPITL EAMETNIIPL GDIAGEDPVA ENSP00000261883/1-1184 NTTKVLPFNK KGSAVFHEIK MLRRKKPITL EAMETNIIPL GEVVGEDPMA ENSBTAP00000003651/1-1149 NTTKVLPFNK KGSAVFHEIK MLRRKEPITL EATETNIIPL GDMAGEDPVA bmy_12705T0/1-1161 NTTKVLPFNK KGSAVFQEIK MLRWKEPITL EAMETNIIPL GDMAGEDPVA BACU001066/1-1147 NTTKVLPFNK KGSAVFHEIK MLRWKEPITL EAMETNIIPL GDMAGEDPVA 601 650 ENSTTRP00000004712/1-1182 ELEIPSKSFY RQNGEPYTGK VKASVTFLDP RNISTATAAQ SDLNFINDEG ENSP00000261883/1-1184 ELEIPSRSFY RQNGEPYIGK VKASVTFLDP RNISTATAAQ TDLNFINDEG ENSBTAP00000003651/1-1149 ELEIPSKSFY RQNGEPYMGK VKASVTFLDP RNISTATAAQ SDLNFINDEG bmy_12705T0/1-1161 ELEIPSKSFY RQNGEPYTGK VKASVTFLDP RNISTATAAQ SDLNFINDEG BACU001066/1-1147 ELEIPSKSFY RQNGEPYTGK VKASVTFLDP RNISTATAAQ SDLNFINDEG 651 700 ENSTTRP00000004712/1-1182 DTFPLRTYGM FSVDFTDEAT SESLNVGKVK VHLDSTQVKM PEHLPMMKLW ENSP00000261883/1-1184 DTFPLRTYGM FSVDFRDEVT SEPLNAGKVK VHLDSTQVKM PEHISTVKLW ENSBTAP00000003651/1-1149 DTFPLRTYGM FSVDFRDEAT SESLNVGKVK VHLDSTQVKM PEHVPMMKLW bmy_12705T0/1-1161 DIFPLRTYGM FSVDFTDEAT SXSLNVGKVK VHLDSTQVKM PEHLPMMKLW BACU001066/1-1147 DIFPLRTYGM FSVDFTDEAT SESLNVGKVK VHLDSTQVKM PEHLPMMKLW 701 750 ENSTTRP00000004712/1-1182 SLNPGTGLWE EEGDFKFESQ RRNRREDRTF LVGNMEIRER RLFNLDVPES ENSP00000261883/1-1184 SLNPDTGLWE EEGDFKFENQ RRNKREDRTF LVGNLEIRER RLFNLDVPES ENSBTAP00000003651/1-1149 SLNPDTGLWE EEGDFKPESQ RRNRREDRTF LVGNMEIRER RLFNLDVPES bmy_12705T0/1-1161 SLNPGTGLWE EEGDFKFESQ RRNRREDRTF LVGNMEIRER RLFNLDVPES BACU001066/1-1147 SLNPGTGLWE EEGDFKFESQ RRNRREDRTF LVGNMEIRER RLFNLDVPES 751 800 ENSTTRP00000004712/1-1182 RRCFIKVRAY RSERFLPSEQ MQGVVVSVIN LEPRTGFSSN PRAWGRFDSV ENSP00000261883/1-1184 RRCFVKVRAY RSERFLPSEQ IQGVVISVIN LEPRTGFLSN PRAWGRFDSV ENSBTAP00000003651/1-1149 RRCFIKVRAY RSERFLPSEQ IQGVVVSVIN LEPRTGFSSN PRAWGRFDSV bmy_12705T0/1-1161 RRCFIKVRAY RSERFLPSEQ MQGVVVSVIN LEPRPGFSSN PRAWGRFDSV BACU001066/1-1147 RRCFIKVRAY RSQRFLPSEQ MQGVVVSVIN LEPRTGFSSN PRAWGRFDSV 801 850 ENSTTRP00000004712/1-1182 ITGPNGACLP AFCDDQSPDA YSAYVLASLA GDELEAVESF PKFNPNAIGV ENSP00000261883/1-1184 ITGPNGACVP AFCDDQSPDA YSAYVLASLA GEELQAVESS PKFNPNAIGV ENSBTAP00000003651/1-1149 LTGPNGACLP AFCDDQSPDA YSAYVLASLA GEELEAVESS PKFNPNAIGV bmy_12705T0/1-1161 ITGPNGACLP AFCDDQSPDA YSAYVLASLA GEELEAVESS PKFNPNAIGV BACU001066/1-1147 ITGPNGACLP AFCDDQSPDA YSAYVLASLA GEELEAVESS PKFNPNAIGV 851 900 ENSTTRP00000004712/1-1182 PQPYLNKLKY RRTDHEDPQA KKTAFQISMA KPRPNSAEES NGPIYAFENL ENSP00000261883/1-1184 PQPYLNKLNY RRTDHEDPRV KKTAFQISMA KPRPNSAEES NGPIYAFENL ENSBTAP00000003651/1-1149 PQPYLNKLKY RRTDHEDPRV KKTAFQISMA KPRPNSPEEG NGPIYAFENL bmy_12705T0/1-1161 PQPYLNKLKY RRTDHEDPQV KKTAFQISMA KPRPNSAEES NGPIYAFENL BACU001066/1-1147 PQPYLNKLKY RRTDHEDPQV KKTAFQISMA KPRPNSAEES NGPIYAFENL 901 950 ENSTTRP00000004712/1-1182 QACEEAPPSA AHFRFYQIEG DRYDYNTVPF NEDDPMSWTE DYLAWWPKPM ENSP00000261883/1-1184 RACEEAPPSA AHFRFYQIEG DRYDYNTVPF NEDDPMSWTE DYLAWWPKPM ENSBTAP00000003651/1-1149 RECEDAPPSA AHFRFYQIEG DRYDYNTVPF NG----GWIE DYLAWGPKP- bmy_12705T0/1-1161 QACEEVPPSA AHFRFYQIEG DRYDYNTVPF NEDDPMSWTE DYLAWWPKPM BACU001066/1-1147 QACEEVPPSA PHFRFYQIEG DRYDYNTVPF NEDDPMSWTE DYLAWWPKPM 951 1000 ENSTTRP00000004712/1-1182 EF-VCYIKVK IMGPLEVNVR SRNMGGTHRQ T-GKLYGIRX XXXXXXXXXX ENSP00000261883/1-1184 EFRACYIKVK IVGPLEVNVR SRNMGGTHRQ TVGKLYGIRD VRSTRDRDQP ENSBTAP00000003651/1-1149 EFRACYIKVK IGGPLRINVR SRNMGGTHRR TVGKLYGIRD VKSTRDRDQP bmy_12705T0/1-1161 EFRACYIKVK IMGPLEVNVR SRNMGGTHRQ TVGKLYGIRD VKSTRDRDQP BACU001066/1-1147 EFRACYIKVK IMGPLEVNVR SRNMGGTHRQ TVGKLYGIRD VKSTRDRDQP 1001 1050 ENSTTRP00000004712/1-1182 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261883/1-1184 NVSAACLEFK CSGMLYDQDR VDRTLVKVIP QGSCRRASVN PMLHEYLVNH ENSBTAP00000003651/1-1149 NISSACLEFK CSGMLYDQDR VDRTLVKVIP QGSCQRASVN SMLHEYLVNH bmy_12705T0/1-1161 NVSAACLEFK CSGMLYDQDR VDRTLVKVIP QGSCHRVSVN SMLHEYLVNH BACU001066/1-1147 NVSAACLEFK CSGMLYDQDR VDRTLVKVIP QGSCHRVSVN SMLHEYLVNH 1051 1100 ENSTTRP00000004712/1-1182 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261883/1-1184 LPLAVNNDTS EYTMLAPLDP LGHNYGIYTV TDQDPRTAKE IALGRCFDGT ENSBTAP00000003651/1-1149 LPLAVNNNTS EYTMLAPLDP LGHNYGIYTV TDQDPRTAKE IALGRCFDGT bmy_12705T0/1-1161 LPLPVNNDTS EYTMLAPLDP LGHNYGIYTV TDQDPRTAKE IALGRCFDGT BACU001066/1-1147 LPLPVNNDTS EYTMLAPLDP LGHNYGIYTV TDQDPRTAKE IALGRCFDGT 1101 1150 ENSTTRP00000004712/1-1182 XXXXXXXXKS NVGVALTFNC VERQVGRQSA FQYLQSTPAR PSPASTVRGR ENSP00000261883/1-1184 SDGSSRIMKS NVGVALTFNC VERQVGRQSA FQYLQSTPAQ SPAAGTVQGR ENSBTAP00000003651/1-1149 SDGSSRVMKA NVGVALTFNC VERQVGRQSA FQYLQNTPAQ PSPASTVRGR bmy_12705T0/1-1161 SDGSSRVMKS NVGVALTFNC VERQVGRQSA FQYLQSIPAR PSPASTVRGR BACU001066/1-1147 SDGSSRVMKS NVGVALTFNC IERQ-EPLVS FQ-------- ---------- 1151 1200 ENSTTRP00000004712/1-1182 APSRR-QRSS QGGQRWRRGA ASLRFSGVAQ QPLSN ENSP00000261883/1-1184 VPSRRQQRAS RGGQRQGGVV ASLRFPRVAQ QPLIN ENSBTAP00000003651/1-1149 VPSRR-QRAS QGSQR--GGV ASLRFPGAAQ Q---- bmy_12705T0/1-1161 APSRR-QRAS QGGQRRRRGA ASLRVSGVAQ QPLSN BACU001066/1-1147 ---------- ---------I SFLCSPGFIE EVAIS