KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:47 2014 Check: 00 .. Name: bmy_21467T0/1-420 Len: 510 Check: 6286 Weight: 1.00 Name: BACU006011/1-410 Len: 510 Check: 5854 Weight: 1.00 Name: ENSP00000307863/1-475 Len: 510 Check: 5367 Weight: 1.00 Name: ENSTTRP00000000930/1-475 Len: 510 Check: 5367 Weight: 1.00 Name: ENSBTAP00000003664/1-475 Len: 510 Check: 5231 Weight: 1.00 // 1 50 bmy_21467T0/1-420 ---------M SDFDEFERQL NENK------ ---------- -----QERDK BACU006011/1-410 MKPLAEAANV GNGDSLSVRF RQEAVKRDYL PPGSVRYVAC CACAAGERDK ENSP00000307863/1-475 ---------M SDFDEFERQL NENK------ ---------- -----QERDK ENSTTRP00000000930/1-475 ---------M SDFDEFERQL NENK------ ---------- -----QERDK ENSBTAP00000003664/1-475 ---------M SDFDEFERQL NENK------ ---------- -----QERDK 51 100 bmy_21467T0/1-420 ENRHRKRSHS RSRSRDRKRR SRSRDRRNRD QRSASRDRRR RSPLTTAPTV BACU006011/1-410 ENRHRKRSHS RSRSRDRKRR SRSRDRRNRD QRSASRDRRR RRLPS----- ENSP00000307863/1-475 ENRHRKRSHS RSRSRDRKRR SRSRDRRNRD QRSASRDRRR RSKPLTRGAK ENSTTRP00000000930/1-475 ENRHRKRSHS RSRSRDRKRR SRSRDRRNRD QRSASRDRRR RSKPLTRGAK ENSBTAP00000003664/1-475 ENRHRKRSHS RSRSRDRKRR SRSRDRRNRD QRSASRDRRR RSKPLTRGAK 101 150 bmy_21467T0/1-420 EVDSGDEAVN RPGFAEAVVA RGREGAAVAP VHGRPAVLSS SSLPFEAAGQ BACU006011/1-410 -------VLS AP-------- ------WEA- ---------- ---------- ENSP00000307863/1-475 EEHGG--LIR SPRHEKKKKV RKY---WDVP PPGFEHITPM QYKAMQAAGQ ENSTTRP00000000930/1-475 EEHGG--LIR SPRHEKKKKV RKY---WDVP PPGFEHITPM QYKAMQAAGQ ENSBTAP00000003664/1-475 EEHGG--LIR SPRHEKKKKV RKY---WDVP PPGFEHITPM QYKAMQAAGQ 151 200 bmy_21467T0/1-420 IPATALLPTM TPDGLAVTPT PVPVVGSQMT RQARRLYVGN IPF------- BACU006011/1-410 ---------- ---------- ---------- ---------- ---------M ENSP00000307863/1-475 IPATALLPTM TPDGLAVTPT PVPVVGSQMT RQARRLYVGN IPFGITEEAM ENSTTRP00000000930/1-475 IPATALLPTM TPDGLAVTPT PVPVVGSQMT RQARRLYVGN IPFGITEEAM ENSBTAP00000003664/1-475 IPATALLPTM TPDGLAVTPT PVPVVGSQMT RQARRLYVGN IPFGITEEAM 201 250 bmy_21467T0/1-420 ---------- -GITEGPDVP PC-------- ---------- ---------- BACU006011/1-410 MDFFNAQMRL GGLTQAPGNP VLAVQINQDK NFAFLEFRSV DETTQAMAFD ENSP00000307863/1-475 MDFFNAQMRL GGLTQAPGNP VLAVQINQDK NFAFLEFRSV DETTQAMAFD ENSTTRP00000000930/1-475 MDFFNAQMRL GGLTQAPGNP VLAVQINQDK NFAFLEFRSV DETTQAMAFD ENSBTAP00000003664/1-475 MDFFNAQMRL GGLTQAPGNP VLAVQINQDK NFAFLEFRSV DETTQAMAFD 251 300 bmy_21467T0/1-420 ---------- WGRSASRRVL PGRASKEGLG RARVVSTVVP DSAHKLFIGG BACU006011/1-410 GIIFQGQSLK IRRPHDYQPL PGMSENPSVY VPGVVSTVVP DSAHKLFIGG ENSP00000307863/1-475 GIIFQGQSLK IRRPHDYQPL PGMSENPSVY VPGVVSTVVP DSAHKLFIGG ENSTTRP00000000930/1-475 GIIFQGQSLK IRRPHDYQPL PGMSENPSVY VPGVVSTVVP DSAHKLFIGG ENSBTAP00000003664/1-475 GIIFQGQSLK IRRPHDYQPL PGMSENPSVY VPGVVSTVVP DSAHKLFIGG 301 350 bmy_21467T0/1-420 LPNYLNDDQV KELLTSFGPL KAFNLVKDSA TGLSKGYAFC EYVDINVTDQ BACU006011/1-410 LPNYLNDDQV KELLTSFGPL KAFNLVKDSA TGLSKGYAFC EYVDINVTDQ ENSP00000307863/1-475 LPNYLNDDQV KELLTSFGPL KAFNLVKDSA TGLSKGYAFC EYVDINVTDQ ENSTTRP00000000930/1-475 LPNYLNDDQV KELLTSFGPL KAFNLVKDSA TGLSKGYAFC EYVDINVTDQ ENSBTAP00000003664/1-475 LPNYLNDDQV KELLTSFGPL KAFNLVKDSA TGLSKGYAFC EYVDINVTDQ 351 400 bmy_21467T0/1-420 AIAGLNGMQL GDKKLLVQRA SVGAKNATL- ---STINQTP VTLQVPGLMS BACU006011/1-410 AIAGLNGMQL GDKKLLVQRA SVGAKNATL- ---STINQTP VTLQVPGLMS ENSP00000307863/1-475 AIAGLNGMQL GDKKLLVQRA SVGAKNATLV SPPSTINQTP VTLQVPGLMS ENSTTRP00000000930/1-475 AIAGLNGMQL GDKKLLVQRA SVGAKNATLV SPPSTINQTP VTLQVPGLMS ENSBTAP00000003664/1-475 AIAGLNGMQL GDKKLLVQRA SVGAKNATLV SPLSTINQTP VTLQVPGLMS 401 450 bmy_21467T0/1-420 SQVQMGGHPT EVLCLMNMVL PEELLDDEEY EEIVEDVRDE CSKYGLVKSI BACU006011/1-410 SQVQMGGHPT EVLCLMNMVL PEELLDDEEY EEIVEDVRDE CSKYGLVKSI ENSP00000307863/1-475 SQVQMGGHPT EVLCLMNMVL PEELLDDEEY EEIVEDVRDE CSKYGLVKSI ENSTTRP00000000930/1-475 SQVQMGGHPT EVLCLMNMVL PEELLDDEEY EEIVEDVRDE CSKYGLVKSI ENSBTAP00000003664/1-475 SQVQMGGHPT EVLCLMNMVL PEELLDDEEY EEIVEDVRDE CGKYGLVKSI 451 500 bmy_21467T0/1-420 EIPRPVDGVE VPGCGKIFVE FTSVFDCQKA MQGLTGRKFA NRVVVTKYCD BACU006011/1-410 EIPRPVDGVE VPGCGKIFVE FTSVFDCQKA MQGLTGRKFA NRVVVTKYCD ENSP00000307863/1-475 EIPRPVDGVE VPGCGKIFVE FTSVFDCQKA MQGLTGRKFA NRVVVTKYCD ENSTTRP00000000930/1-475 EIPRPVDGVE VPGCGKIFVE FTSVFDCQKA MQGLTGRKFA NRVVVTKYCD ENSBTAP00000003664/1-475 EIPRPVDGVE VPGCGKIFVE FTSVFDCQKA MQGLTGRKFA NRVVVTKYCD 501 550 bmy_21467T0/1-420 PDSYHRRDFW BACU006011/1-410 PDSYHRRDFW ENSP00000307863/1-475 PDSYHRRDFW ENSTTRP00000000930/1-475 PDSYHRRDFW ENSBTAP00000003664/1-475 PDSYHRRDFW