KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:49 2014 Check: 00 .. Name: ENSP00000340271/1-929 Len: 941 Check: 1804 Weight: 1.00 Name: ENSTTRP00000004760/1-653 Len: 941 Check: 1583 Weight: 1.00 Name: ENSBTAP00000003674/1-932 Len: 941 Check: 2751 Weight: 1.00 Name: bmy_00660T0/1-746 Len: 941 Check: 1773 Weight: 1.00 Name: BACU001762/1-623 Len: 941 Check: 5266 Weight: 1.00 // 1 50 ENSP00000340271/1-929 MCESYSRSLL RVSVAQICQA LGWDSVQLSA CHLLTDV--L QRYLQQLGRG ENSTTRP00000004760/1-653 MCESYSRSLL RVSVAQICQA LGWDSVQLSA CHLLTDV--L QRYLQQLGRG ENSBTAP00000003674/1-932 MCESYSRSLL RVSVAQICQA LGWDSVQLSA CHLLTDV--L QRYLQQLGRG bmy_00660T0/1-746 ---------- ---------- --MESPGRQP SYHLPEPFPL SRSLQVL--- BACU001762/1-623 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000340271/1-929 CHRYSELYGR TDPILDDVGE AFQLMGVSLH ELEDYIHNIE PVTFPHQIPS ENSTTRP00000004760/1-653 CHRYSELYGR TDPILDDVGE AFQLMGVSLH ELEDYIHNIE PVTFPHQIPS ENSBTAP00000003674/1-932 CHRYSELYGR TDPILDDVGE AFQLMGVSLH ELEDYIHNIE PVTFPHQIPS bmy_00660T0/1-746 ---------- ---------- ------VGLR GPLDFRHPVS ACHPPTALDT BACU001762/1-623 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000340271/1-929 FPVSKNNVLQ FP--QPGSKD AEERKEYIPD YLPPIVSSQ- ----EEEEEE ENSTTRP00000004760/1-653 FPVSKNNVLQ FP--QPGSKD AEERKEYIPD YMPPIVSSQ- ---------- ENSBTAP00000003674/1-932 FPVSKNNVLQ FP--QPGSKD AEERKEYIPD YMPPIVSSQ- ----EEEEEE bmy_00660T0/1-746 PPQQQQPTRD SPSWQHPGFQ TLSILSILSN YFTEVPFTQS LLTSKKEEEE BACU001762/1-623 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000340271/1-929 QVPTDGGTSA EAMQVPLEED DELEEEEIIN DENFLGKRPL DSPEAEELPA ENSTTRP00000004760/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003674/1-932 QVPTDGGTSA EAMQVPLEED DELEEEEIIN DENFLGKRPL DSPEAEEMPA bmy_00660T0/1-746 QVPTDGGTSA EAMQVPLEED DELEEEEIIN DENFLGKRPL DSPEAEEMPT BACU001762/1-623 ---------- --MQVPLEED DELEEEEIIN DENFLGKRPL DSPEAEEMPT 201 250 ENSP00000340271/1-929 MKRPRLLSTK GDTLDVVLLE AREPLSSINT QKIPPMLSPV HVQDSTDLAP ENSTTRP00000004760/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003674/1-932 MKRPRLLSTK GDALDVVLLE AREPLSSLNP QKIPPMLSPV HTQDSTDPAP bmy_00660T0/1-746 MKRPRLLSTK GDALDVVLLE AREPLSSINP QKIPPMLSPV HVQDSTDLAP BACU001762/1-623 MKRPRLLSTK GDALDVVLLE AREPLSSINP QKIPPMLSPV HVQDSTDLAP 251 300 ENSP00000340271/1-929 PSPEPPMLAP VAKSQMPTAK PLETKSFTPK TKTKTSSPGQ KTKSPKTAQS ENSTTRP00000004760/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003674/1-932 PSPEPPMLAP VAKSQMPTTK PLEAKSFTPK TKTKTSSPGQ KTKSPKMIPS bmy_00660T0/1-746 PSPEPPMLAP VAKSQLPTAK PLEARSFTPK TKTKTSSPGQ KTKSPKMTPS BACU001762/1-623 PSPEPPMLAP VAKSQLPTAK PLEARSFTPK TKTKTSSPGQ KTKSPKMTPS 301 350 ENSP00000340271/1-929 PAMVGSPIRS PKTVSKEKKS PGRSKSPKSP KSPKVTTHIP QTPVRPETPN ENSTTRP00000004760/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003674/1-932 PAMVGSPIRS PKTISKEKKS PGRSKSPKSP KSPKVMTHIP QVPVRPDTPN bmy_00660T0/1-746 PAMVGSPIRS PKTISKEKKS PGRSKSPKSP KSPKVITHIP QVPIRPDTPN BACU001762/1-623 PAMVGSPIRS PKTISKEKKS PGRSKSPKSP KSPKVITHIP QVPIRPDTPN 351 400 ENSP00000340271/1-929 RTPSATLSEK ISKETIQVKQ IQTPPDAGKL NSENQPKKAV VADKTIEASI ENSTTRP00000004760/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003674/1-932 RTPSATISEK ISKETVQVKQ IQTLPDAGRL NSESQLRKAV VTDKTIDDSI bmy_00660T0/1-746 RTPSATISEK ISKETVQVKQ IQTAPDAGKL NHENQPKKAV VTDKTIDDSI BACU001762/1-623 RTPSATISEK ISKETIQVKQ IQTAPDAGKL NHENQPKKAV VTDKTIDDSI 401 450 ENSP00000340271/1-929 DAVIARACAE REPDPFEFSS GSESEGDIFT SPKRISGPEC TTPKASTSAN ENSTTRP00000004760/1-653 ---------- ------EFSS GSES-GDIFT SPKRISGSEC ATPKATTSSS ENSBTAP00000003674/1-932 DAVIARACAE REPDPFEFSS GSESEGDIFT SPKRISGSDS ATPKASTSSN bmy_00660T0/1-746 DAVIARACAE REPDPFEFSS GSESEGDIFT SPKRISGSEC ATPKASTSSS BACU001762/1-623 DAVIARACAE REPDPFEFSS GSESEGDIFT SPKRISGSEC ATPKASTSSS 451 500 ENSP00000340271/1-929 NFTKSGSTPL PLSGGTSSSD NSWTMDASID EVVRKAKLGT PSNMPPNFPY ENSTTRP00000004760/1-653 NFPKSGSTPL PLSGGASSSD NSWTMDASID EVVRKAKMGT PPSVPPSFPY ENSBTAP00000003674/1-932 NFPKSGSTPL PLSGGTSSSD NSWTMDASID EVVRKAKMGT PPSMPPSFPY bmy_00660T0/1-746 NFPKSGSTPL PLSGGTSSSD NSWTMDASID EVVRKAKMGT PPSVPPSFPY BACU001762/1-623 NFPKSGSTPL PLSGGTSSSD NSWTMDASID EVVRKAKMGT PPSVPPSFPY 501 550 ENSP00000340271/1-929 ISSPSVSPPT PEPLHKVYEE KTKLPSSVEV KKKLKKELKT KMKKKEKQRD ENSTTRP00000004760/1-653 ISSPSVSPPT PEPLLKVYEE KPKVPASTDV KKKLKKEMKT KMKKKEKQID ENSBTAP00000003674/1-932 ISSPSVSPPT PEPAHKVYEE KPKPPASLDV KKKLKKELKT KMKKKEKQRD bmy_00660T0/1-746 ISSPSVSPPT PEPLHKVYEE KPKAPASTDV KKKLKKEMKT KMKKKEKQRD BACU001762/1-623 ISSPSVSPPT PEPLHKVYEE KPKVPASTDV KKKLKKEMKT KMKKKEKQRD 551 600 ENSP00000340271/1-929 REREKDKNKD KSKEKDKVKE KEKDKETGRE TKYPWKEFLK EEEADPYKFK ENSTTRP00000004760/1-653 KERDRDKSKE RSKEKEKGK- -----ETSKE AKYPWKDFLK DEEADPYKFK ENSBTAP00000003674/1-932 KERDRDKSKE KSKEKEKGKE KEKDREATKE AKYPWKDFLK DEEADPYKFK bmy_00660T0/1-746 KERDRDKSKE RNKEKEKGK- -----ETSRE AKYPWKDFLK DGEADPYKFK BACU001762/1-623 KERDRDKSKE RSKEKEKGK- -----ETSRE AKYPWKDFLK DGEADPYKFK 601 650 ENSP00000340271/1-929 IKEFEDVDPK VKLKDGLVRK EKEKHKDKKK DREKGKKDKD KREKEKVKDK ENSTTRP00000004760/1-653 IKEFEDVDPK ARLKDGMVRR EKEKHKDKKK DREKGKKDKE KRDKEKTKEK ENSBTAP00000003674/1-932 IKEFEDVDPK ARLKDGIVRK EKEKHKDKKK DREKGKKDKE KRDKEKVKEK bmy_00660T0/1-746 IKEFEDVDPK ARLKDGMVRK EKEKHKDKKK DREKGKKDKE KRDKEKAKEK BACU001762/1-623 IKEFEDVDPK ARLKDGMVRK EKEKHKDKKK DREKGKKDKE KRDKEKAKEK 651 700 ENSP00000340271/1-929 GREDKMKAPA PPLVLPPKEL ALPLFSPATA SRVPAMLPSL LPVLPEKLFE ENSTTRP00000004760/1-653 GREEKLKAAP VPLVLPPKDM ALPLFSPAAA VRIPAMLPSL TPMLPEKLFE ENSBTAP00000003674/1-932 GREEKLKAPP APLVLPPKDV ALPLFSPAAA MRITAVLPSL TPVLPEKLFE bmy_00660T0/1-746 GREEKLKAAP APLVLPPKDV ALPLFSPAAA VRIPAMLPSL TPMLPEKLFE BACU001762/1-623 GREEKLKAAP APLVLPPKDM ALPLFSPAAA MRIPAMLPSL TPMLPEKLFE 701 750 ENSP00000340271/1-929 EKEKVKEKEK KKDKKEKKKK K--EKEKEKK EKEREKEKRE REKREKEKEK ENSTTRP00000004760/1-653 EKEKPKEKER KKDKKEKKKK KEREKEKEKK EKEREKEKRE REKREKEKER ENSBTAP00000003674/1-932 EKEKPKEKER KKDKKEKKKK KEKEKEKEKK EKEREKEKRE REKREKEKER bmy_00660T0/1-746 EKEKPKEKER KKDKKEKKKK KEREKEKEKK EKEREKEKRE REKREKEKEK BACU001762/1-623 EKEKPKEKDR KKDKKEKKKK KEREKEKEKK EKEREKEKRE REKREKEKEK 751 800 ENSP00000340271/1-929 HKHEKIKVEP VALAPSPVIP RLTLRVGAGQ DKIVISKVVP APEAKPAPSQ ENSTTRP00000004760/1-653 HKHEKIKVEP VVPAPSPVIP RLTLRVGAGQ DKIVISKVVP APEAKPAPSL ENSBTAP00000003674/1-932 HKHEKIKVEP VVPAPSPVIP RLTLKVGAGQ DKIVISKVVP APEAKPAPSL bmy_00660T0/1-746 HKHEKLVFPP ---------- --DFRFMPLK D--------- ---------- BACU001762/1-623 HKHEKVS--- ---------- --TLSLGALS D--------- ---------- 801 850 ENSP00000340271/1-929 NRPKTPPPAP APAPGPMLVS PAPVPLPLLA QAAAGPALLP SPGPAASGAS ENSTTRP00000004760/1-653 NRPKTPPPMP APAPVPVHVT PAPVPLPLLA PASTPLTGMP APAPAASGSA ENSBTAP00000003674/1-932 NRPKTPPPAP APAPAAMHVT PAPVPLPLLA PASAPLAGMP APAPAASGAA bmy_00660T0/1-746 ---------- ---------- ---------- ---------- ---GDKSGAS BACU001762/1-623 ---------- ---------- ---------- ---------- ---PSSVESA 851 900 ENSP00000340271/1-929 AK-APVRSVV TETVSTYVIR DEWGNQIWIC PGCNKPDDGS PMIGCDDCDD ENSTTRP00000004760/1-653 SSKAPVRSVV TETVSTYVIR DEWGNQIWIC PGCNKPDDGS PMIGCDDCDD ENSBTAP00000003674/1-932 SSKAPVRSVV TETVSTYVIR DEWGNQIWIC PGCNKPDDGS PMIGCDDCDD bmy_00660T0/1-746 GP-------- ---------- ---------- ----SPKPRD PQIDSQS--- BACU001762/1-623 GE-------- ---------- ---------- ----QSQQLS VFFGCKS--- 901 950 ENSP00000340271/1-929 WYHWPCVGIM TAPPEEMQWF CPKCANKKKD KKHKKRKHRA H ENSTTRP00000004760/1-653 WYHWPCVGIM AAPPEEMQWF CPKCANKKKD KKHKKRKHRA H ENSBTAP00000003674/1-932 WYHWPCVGIM AAPPEEMQWF CPKCCNRKKD KKHKKRKHRA H bmy_00660T0/1-746 -WSWP----- ---------- ---------- ---RQNRELE M BACU001762/1-623 ----PTA--- ---------- ---------- ---------- -