KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:49 2014 Check: 00 .. Name: ENSP00000259339/1-336 Len: 336 Check: 4045 Weight: 1.00 Name: ENSBTAP00000003678/1-270 Len: 336 Check: 8973 Weight: 1.00 Name: BACU016221/1-302 Len: 336 Check: 6353 Weight: 1.00 Name: ENSTTRP00000006180/1-335 Len: 336 Check: 7031 Weight: 1.00 Name: bmy_08584T0/1-217 Len: 336 Check: 3776 Weight: 1.00 // 1 50 ENSP00000259339/1-336 MLRAGWLRGA AALALLLAAR VVAAFEPITV GLAIGAASAI TGYLSYNDIY ENSBTAP00000003678/1-270 ALKQDL---- --EEKLFGQH LATEV----- -----ILKAL TGF------- BACU016221/1-302 MHPSGLLWVA AALRLLLAAH VAAAFEPISL GIAIGAASAL TGYLSYTDLY ENSTTRP00000006180/1-335 MHPAGQFWVA AALRLLLAAH VAAAFEPISL GIAVGAASAL TGYLSYRDLY bmy_08584T0/1-217 MHSAGLLWVA AALRLLLAAH VAAAFEPISL GIAIGAASAL TGYLSYTDLY 51 100 ENSP00000259339/1-336 CRFAECCREE RPLNASALKL DLEEKLFGQH LATEVIFKAL TGFRNNKNPK ENSBTAP00000003678/1-270 ---------- ---------- ---------- ---------- ---KNNKNPK BACU016221/1-302 CRP------R LPVVHGPV-L PLRRVLPRRA AAQR------ ---------- ENSTTRP00000006180/1-335 CRFAECCR-E QPLNASALKL NLEEKLFGQH LATEVILKAL TGFKNNKNPK bmy_08584T0/1-217 CRFAECCREE QPLNASALKL NLEEKLFGQH LAT------- ---------- 101 150 ENSP00000259339/1-336 KPLTLSLHGW AGTGKNFVSQ IVAENLHPKG LKSNFVHLFV STLHFPHEQK ENSBTAP00000003678/1-270 KPLTLSLHGW AGTGKNFVSQ IVAENLHPKG LKSNFVHLFV STLHFPHEQH BACU016221/1-302 -------VGW -GECCFSGAR LMCIFLSVPG LASAALKLNL EEKLF--GQH ENSTTRP00000006180/1-335 KPLTLSLHGW AGTGKNFVSQ IVAENLHPKG LKSNFVHLFV STLHFPHEQH bmy_08584T0/1-217 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000259339/1-336 IKLYQDQLQK WIRGNVSACA NSVFIFDEMD KLHPGIIDAI KPFLDYYEQV ENSBTAP00000003678/1-270 IKLYQDQLQR WIRGNVSACA GSVFIFDEMD KLHPGVIDAI KPFLDYYEQI BACU016221/1-302 LAT-EDQLQR WIRGNVSACA SSVFIFDEMD KLHPGVIDAI KPFLDYYEQI ENSTTRP00000006180/1-335 IKLYQDQLQR WIRGNVSACA SSVFIFDEMD KLHPGVIDAI KPFLDYYEQI bmy_08584T0/1-217 ----EDQLQR WIRGNVSACA SSVFIFDEMD KLHPGVIDAI KPFLDYYEQI 201 250 ENSP00000259339/1-336 DGVSYRKAIF IFLSNAGGDL ITKTALDFWR AGRKREDIQL KDLEPVLSVG ENSBTAP00000003678/1-270 DGVSYRKAIF IFLSNAGGDL ITKTALDFWR AGRKREDIQL KDLEAVLSVG BACU016221/1-302 DGVSYRKAIF IFLSNAGGDL ITKTALDFWR AGRKREDIQL KDLEPVLSVG ENSTTRP00000006180/1-335 DGVSYRKAIF IFLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08584T0/1-217 DGVSYRKAIF IFL------- ---------- ---------- ---------- 251 300 ENSP00000259339/1-336 VFNNKHSGLW HSGLIDKNLI DYFIPFLPLE YRHVKMCVRA EMRARGSAID ENSBTAP00000003678/1-270 VFNNKHSGLW HSGLIDRNLI DYFIPFLPLE YRHVKMCVQA EMKARGSAVD BACU016221/1-302 VFNNKHSGLW HSGLIDRNLI DYFIPFLPLE YSHVKMCVQA EMKARGSAID ENSTTRP00000006180/1-335 XXXXXXXGLW HSGLIDRNLI DYFIPFLPLE YRHVKMCVRA EMKARGSAID bmy_08584T0/1-217 ---------- -SGLIDRNLI DYFIPFLPLE YSHVKMCVRA EMKARGSAID 301 350 ENSP00000259339/1-336 EDIVTRVAEE MTFFPRDEKI YSDKGCKTVQ SRLDFH ENSBTAP00000003678/1-270 EDVVTRVAEE MTFFPKDEKI YSDKGCKTVQ SRLDFY BACU016221/1-302 EDVVTRVAEE MTFFPKDEKI YSDKGCKTVQ SRLDFH ENSTTRP00000006180/1-335 EDVVTRVAEE MTFFPKDEKI YSDKGCKTVQ SRLDFH bmy_08584T0/1-217 EDVVTRVAEE MTFFPKDEKI YSDKGCKTVQ SRLDFH