KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:50 2014 Check: 00 .. Name: ENSBTAP00000003689/1-1195 Len: 1251 Check: 5539 Weight: 1.00 Name: ENSTTRP00000000668/1-1187 Len: 1251 Check: 3161 Weight: 1.00 Name: ENSP00000272198/1-701 Len: 1251 Check: 6490 Weight: 1.00 Name: bmy_19969T0/1-1114 Len: 1251 Check: 5369 Weight: 1.00 Name: BACU011688/1-1206 Len: 1251 Check: 4384 Weight: 1.00 // 1 50 ENSBTAP00000003689/1-1195 MCEVMPTINE GDPLGPPHGA DADANFEQLM VNMLDEREKL LESLRESQET ENSTTRP00000000668/1-1187 MCEVMPTINE GDPLGSPHGT DADANFEQLM VNMLDEREKL LESLRENQET ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 MCEVMPTINE GDPLGPPHGT DADANFEQLM VNMLDEREKL LESLRESQET BACU011688/1-1206 MCEVMPTINE GDPLGPPHGT DADANFEQLM VNMLDEREKL LESLRESQET 51 100 ENSBTAP00000003689/1-1195 LLATQSRLQD ALHERDQLQR HLNSALPQEF TTLTRELSMC REQLLEREEE ENSTTRP00000000668/1-1187 LAATQSRLQD ALHERDQLQC HLNSALPQEF ATLTRELSMC REQLLEREEE ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 LAATQSWLQD ALHERDQLQR HLNSALPQEF ATLTRELSMC REQLLEREEE BACU011688/1-1206 LAVTQSWLQD ALHERDQLQR HLNSALPQEF ATLTRELSMC REQLLEREEE 101 150 ENSBTAP00000003689/1-1195 ISELKAERNN TRLLLEHLEC LVSRHERSLR MTVVKRQAQS PSGVSSEVEV ENSTTRP00000000668/1-1187 ISELKAERNN TRLLLEHLEC LVSRHERSLR MTVVKRQAQS PSGVSSEVEV ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 ISELKAERNN TRLLLEHLEC LVSRHERSLR MTVVKRQAQS PSGVSSEVEV BACU011688/1-1206 ISELKAERNN TRLLLEHLEC LVSRHERSLR MTVVKRQAQS PSGVSSEVEV 151 200 ENSBTAP00000003689/1-1195 LKALKSLFEH HKALDEKVRE RLRAALERVT TLEEQLACAH QQVSSLQQGS ENSTTRP00000000668/1-1187 LKALKSLFVH HKALDEKVRE RLRVALERVT TLEEQLA-AH QQXXXXXXXX ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 LKALKSLFEH HKALDEKVRE RLRVALERVT TLEEQLAGAH QQVSALQQEA BACU011688/1-1206 LKALKSLFEH HKALDEKVRE RLRVALERVT TLEEQLAGAH QQVSALQQEA 201 250 ENSBTAP00000003689/1-1195 GVRDGVAEEE GTVELGPKGL WKEDAGQVEE LQELLEKQNF ELSQARERLV ENSTTRP00000000668/1-1187 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 GVQDGVAEEE GTVELGPKCL WKHDAGQVEE LQELLEKQNF ELSQARERLV BACU011688/1-1206 GVQDGVAEEE GTVELGPKCL WKHDAGQVEE LQELLEKQNF ELSQARERLV 251 300 ENSBTAP00000003689/1-1195 TLTATVAELE EDLGTARRDL IKSEELSSKH QRDLRE---- ---------- ENSTTRP00000000668/1-1187 XXXXXXXELE EDLGTRRD-- IKSEELSSKH QR-LRE---- ---------- ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 TLTATVAELE EDLGTARRDL IKSEELSSKH QRDLREVSKG LGLTLSFWVQ BACU011688/1-1206 TLTATVAELE EDLGTARRDL IKSEELSSKH QRDLRE---- ---------- 301 350 ENSBTAP00000003689/1-1195 ALAQKEDMEE RITTLEKRYL AAQREATSIH DLNDKLENEL ANRESLHRQC ENSTTRP00000000668/1-1187 ALAQKEDVEK RITTLEKRYL AAQREATSIH DLNDKLENEL ANKESLHHQC ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 ALAQKEDMEE RITTLEKRYL AAQREATSIH DLNDKLENEL ANKESLHRQC BACU011688/1-1206 ALAQKEDMEE RITTLEKRYL AAQREATSIH DLNDKLENEL ANKESLHRQC 351 400 ENSBTAP00000003689/1-1195 EEKARYLQEL LEVAEQKLQQ TMRKAETLPE VEAELAQRVA ALTK------ ENSTTRP00000000668/1-1187 EEKAQHLQEL LEVAEQKLQQ TMRKAETLPE VEAELAQRIA ALTK------ ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 EEKAQHLQEL LEVAEQKLQQ TMRKAETLPE VEAELAQRIA ALTKASLSRK BACU011688/1-1206 EEKAQHLQEL LEVAEQKLQQ TMRKAETLPE VEAELAQRIA ALTK------ 401 450 ENSBTAP00000003689/1-1195 ---------- ----AEERHG NTEEHLRQLE GQLEEKNQEL ARVRQRERMN ENSTTRP00000000668/1-1187 ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 ADDLQAALTH SSLQAEERHG NIEEHLRQLE GQLQEKNQEL ARVRQREKMN BACU011688/1-1206 ---------- ----AEERHG NIEEHLRQLE GQLQEKNQEL ARVRQREKMN 451 500 ENSBTAP00000003689/1-1195 EAHNKRLSDT VDRLLIEAKE RLQLHLRERM VALEE----- ---------- ENSTTRP00000000668/1-1187 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ---------- ENSP00000272198/1-701 ---------- ---------- ---------- ---------- ---------- bmy_19969T0/1-1114 EDHNKRLSDT VDRLLSESNE RLQLHLKERI AALEEKNTLI QELESSQRQI BACU011688/1-1206 EDHNKRLSDT VDRLLSESNE RLQLHLKERI AALEEKNTLI QELESSQRQI 501 550 ENSBTAP00000003689/1-1195 ------KGRL SEEIEKLRQE VDQLKGRGGP FVDGIHSRAY PSSAAEVRFS ENSTTRP00000000668/1-1187 ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAH IGSAADVRFS ENSP00000272198/1-701 ---------- ---------- ---------- ---------- MGSAADVRFS bmy_19969T0/1-1114 EEQHHHKGRL SEEIEKLRQE VDQLKGRGGP FVDGIHSRAH IGSAADVRFS BACU011688/1-1206 EEQHHHKGRL SEEIEKLRQE VDQLKGRGGP FVDGIHSRAH IGSAADVRFS 551 600 ENSBTAP00000003689/1-1195 LSTTAHASQG LRRCHSARRE PPAEDWEPSP LPALLVPTAT PAFDSDREIS ENSTTRP00000000668/1-1187 LSATAHAPQG LHRSYSALRE ESAKDWEPSP LPGVLVPTAT PAFDSDPEIS ENSP00000272198/1-701 LGTTTHAPPG VHRRYSALRE ESAKDWETSP LPGMLAPAAG PAFDSDPEIS bmy_19969T0/1-1114 LSTTSHAPQG LHRCYSALRE ESAKDWEPSP LPGVLVPTAT PAFDSDPEIS BACU011688/1-1206 LSTTSHAPQG LHRCYSALRE ESAKDWEPSP LPGVLVPTAT PAFDSDPEIS 601 650 ENSBTAP00000003689/1-1195 DVDEDEPGGL VGSMDVVSPS SHSDAQTLAM MLQEQLDAIN EEIRMIQEEK ENSTTRP00000000668/1-1187 DVDEDEPGGL VGSMDVVSPS SHSDAQTLAM MLQEQLDAIN EEIRMIQEEK ENSP00000272198/1-701 DVDEDEPGGL VGSADVVSPS GHSDAQTLAM MLQEQLDAIN EEIRMIQEEK bmy_19969T0/1-1114 DVDEDEPGGL VGSMDVVSPS SHSDAQTLAM MLQEQLDAIN EEIRMIQEEK BACU011688/1-1206 DVDEDEPGGL VGSMDVVSPS SHSDAQTLAM MLQEQLDAIN EEIRMIQEEK 651 700 ENSBTAP00000003689/1-1195 ESTELRAEEL ETRVTSGSME ALDLTQLHKR GSIPTSLTAL SLASASPPLS ENSTTRP00000000668/1-1187 ESTELRAEEI ETRVTSGSME ALNLTQLRKR GSIPTSLTAL SLASASPPFS ENSP00000272198/1-701 ESTELRAEEI ETRVTSGSME ALNLKQLRKR GSIPTSLTAL SLASASPPLS bmy_19969T0/1-1114 ESTELRAEEI ETRVTSGSME ALNLTQLRKR GSIPTSLTAL SLASASPPFS BACU011688/1-1206 ESTELRAEEI ETRVTSGSME ALNLTQLRKR GSIPTSLTAL SLASVSPPFS 701 750 ENSBTAP00000003689/1-1195 GRATPKLTSR SAAQDLDRMG VMTLPSDLRK HRRKLLSPVS WEENREDKAT ENSTTRP00000000668/1-1187 GRSTPKLTSR SATQDLDRMG VMTLPSDLRK HRRKLLSPVS REENREDKAT ENSP00000272198/1-701 GRSTPKLTSR SAAQDLDRMG VMTLPSDLRK HRRKLLSPVS REENREDKAT bmy_19969T0/1-1114 SRSTPKLTSR SATQDLDRMG VMTLS----- -------PVS REENREDKAT BACU011688/1-1206 GRSTPKLTSR SATQDLDRMG VMTLPSDLRK HRRKLLSPVS REENREDKAT 751 800 ENSBTAP00000003689/1-1195 IKCETSPPSS PRTLQLEKLG LPALSQEEGK SALEDPGSNP SSSNSSQDSL ENSTTRP00000000668/1-1187 IKCETSPPSS PRTLQLEKLG HPALNQEEGK SALEDPGSNP SSSNSSQDSL ENSP00000272198/1-701 IKCETSPPSS PRTLRLEKLG HPALSQEEGK SALEDQGSNP SSSNSSQDSL bmy_19969T0/1-1114 IK-------- ---------- ---------- ---------- ---------- BACU011688/1-1206 IKCETSPPSS PRMLQLEKLG HPALSQEEGK SALEDPGSNP SSSNSSQDSL 801 850 ENSBTAP00000003689/1-1195 HKGAKRKGIK SSIGRLFGKK EKGRLIQPSR DGPTGHGLCL TLVNGFVLLT ENSTTRP00000000668/1-1187 HKGTKRKGIK SSIGRLFGKK EKGRLIQLSQ DGATGHGLCL LV----NLLI ENSP00000272198/1-701 HKGAKRKGIK SSIGRLFGKK EKGRLIQLSR DGATGH---- ------VLLT bmy_19969T0/1-1114 ---------- ---------- ---------- ---------- ------FLLT BACU011688/1-1206 HKGAKRKGIK SSIGRLFGKK EKGRLIQLSQ DGATGH---- ------VLLT 851 900 ENSBTAP00000003689/1-1195 DSELGLQEPM VPGKLGTQAE KDRRLKKKHQ LLEDARRKGM PFAQWDGPTV ENSTTRP00000000668/1-1187 DSELGLQEPM VPTKLGTQAE KDRRLKKKHQ LLEDARRKGM PFAQWDGPTV ENSP00000272198/1-701 DSEFSMQEPM VPAKLGTQAE KDRRLKKKHQ LLEDARRKGM PFAQWDGPTV bmy_19969T0/1-1114 DSELGLQEPM VPTKLGTQAE KDRRLKKKHQ LLEDARRKGM PFAQWDGPTV BACU011688/1-1206 DSELGLQEPM VPTKLGTQAE KDRRLKKKHQ LLEDARRKGM PFAQWDGPTV 901 950 ENSBTAP00000003689/1-1195 VSWLELWVGM PAWYVAACRA NVKSGAIMSA LSDTEIQREI GISNALHRLK ENSTTRP00000000668/1-1187 VSWLELWVGM PAWYVAACRA NVKSGAIMSA LSDTEIQREI GISNALHRLK ENSP00000272198/1-701 VSWLELWVGM PAWYVAACRA NVKSGAIMSA LSDTEIQREI GISNALHRLK bmy_19969T0/1-1114 VSWLELWVGM PAWYVAACRA NVKSGAIMSA LSDTEIQREI GISNALHRLK BACU011688/1-1206 VSWLELWVGM PAWYVAACRA NVKSGAIMSA LSDTEIQREI GISNALHRLK 951 1000 ENSBTAP00000003689/1-1195 LRLAIQEMVS LTSPSAPPTS RTSSGNVWVT HEEMETLATS TKTDSEEGSW ENSTTRP00000000668/1-1187 LRLAIQEMVS LTSPSAPPTS RTSSGNVWVT HEEMETLATS TKTDSEEGSW ENSP00000272198/1-701 LRLAIQEMVS LTSPSAPPTS RTSSGNVWVT HEEMETLETS TKTDSEEGSW bmy_19969T0/1-1114 LRLAIQEMVS LTSPSAPPTS RT-------- ---------- ---------- BACU011688/1-1206 LRLAIQEMVS LTSPSAPPTS RTSSGNVWVT HEEMETLATS TKTDSEEGSW 1001 1050 ENSBTAP00000003689/1-1195 AQTLVYGDMN HEWIGNQWLP SLGLPQYRSY FMECLVDARM LDHLTKKDLR ENSTTRP00000000668/1-1187 AQTLAYGDMN HEWIGNQWLP SLGLPQYRSY FMECLVDARM LDHLTKKDLR ENSP00000272198/1-701 AQTLAYGDMN HEWIGNEWLP SLGLPQYRSY FMECLVDARM LDHLTKKDLR bmy_19969T0/1-1114 --TLAYGDMN HEWIGNQWLP SLGLPQYRSY FMECLVDARM LDHLTKKDLR BACU011688/1-1206 AQTLAYGDMN HEWIGNQWLP SLGLPQYRSY FMECLVDARM LDHLTKKDLR 1051 1100 ENSBTAP00000003689/1-1195 VHLKMVDSSH RTSLQYGIMC LKRLNYDRKE LEKRREESQH EIKDVLVWTN ENSTTRP00000000668/1-1187 VHLKMVDSFH RTSLQYGIMC LKRLNYDRKE LEKRQEESQH EIKDVLVWTN ENSP00000272198/1-701 VHLKMVDSFH RTSLQYGIMC LKRLNYDRKE LEKRREESQH EIKDVLVWTN bmy_19969T0/1-1114 VHLKMVDSFH RTSLQYGIMC LKRLNYDRKE LEKRREESQH EIKDVLVWTN BACU011688/1-1206 VHLKMVDSFH RTSLQYGIMC LKRLNYDRKE LEKRREESQH EIKDVLVWTN 1101 1150 ENSBTAP00000003689/1-1195 DQVVHWVQSI GLRDYAGNLH ESGVHGALLA LDENFDHNTL ALVLQIPTQN ENSTTRP00000000668/1-1187 DQVVHWVQSI GLRDYAGNLH ESGVHGALLA LDENFDHNTL ALVLQIPTQN ENSP00000272198/1-701 DQVVHWVQSI GLRDYAGNLH ESGVHGALLA LDENFDHNTL ALILQIPTQN bmy_19969T0/1-1114 DQVVHWVQSI GLRDYAGNLH ESGVHGALLA LDENFDHNAL ALVLQIPTQN BACU011688/1-1206 DQVVHWVQSI GLRDYAGNLH ESGVHGALLA LDENFDHNAL ALVLQIPMQN 1151 1200 ENSBTAP00000003689/1-1195 TQARQVLERE FNNLLALGTD RKLDDGEDKA LRRAPSWRKR FRPRDPHGR- ENSTTRP00000000668/1-1187 TQARQVMERE FNNLLALGTE RKLDDGEDKV FRRAPSWRKR FRPRDHHGS- ENSP00000272198/1-701 TQARQVMERE FNNLLALGTD RKLDDGDDKV FRRAPSWRKR FRPREHHGRG bmy_19969T0/1-1114 TQARQVMERE FNNLLALGTD RKLDDGEDKV FRRTPSWRKR FRPRDHHGS- BACU011688/1-1206 TQARQVMERE FNNLLALGTD RKLDDGEDKV FRRAPSWRKR FRPRDHHGS- 1201 1250 ENSBTAP00000003689/1-1195 ASLSTAADTL PATFRASTVG PVPPPPSPRK KITPEARSHY LYGHMLSAFR ENSTTRP00000000668/1-1187 AMLSASAETL PVGFRVSTLG PLQPPPAPPK KIMPEAHSHY LYGHMLSAFR ENSP00000272198/1-701 GMLSASAETL PAGFRVSTLG TLQPPPAPPK KIMPEAHSHY LYGHMLSAFR bmy_19969T0/1-1114 AMLSASHETL PVGFRVSTLG PLKPPPAPPK KIMPEAHSHY LYGHMLSAFR BACU011688/1-1206 AMLSASRETL PVGFRVSTLG PLKPPPAPPK KIMPEAHSHY LYGHMLSAFR 1251 1300 ENSBTAP00000003689/1-1195 D ENSTTRP00000000668/1-1187 D ENSP00000272198/1-701 D bmy_19969T0/1-1114 D BACU011688/1-1206 D