KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:52 2014 Check: 00 .. Name: ENSTTRP00000001051/1-549 Len: 623 Check: 8562 Weight: 1.00 Name: ENSP00000355991/1-551 Len: 623 Check: 8664 Weight: 1.00 Name: bmy_12969T0/1-324 Len: 623 Check: 3094 Weight: 1.00 Name: ENSBTAP00000003691/1-554 Len: 623 Check: 7778 Weight: 1.00 Name: BACU000016/1-602 Len: 623 Check: 3300 Weight: 1.00 // 1 50 ENSTTRP00000001051/1-549 ---------- ---------- ---------- ---------- ---------- ENSP00000355991/1-551 ---------- ---------- ---------- ---------- ---------- bmy_12969T0/1-324 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003691/1-554 ---------- ---------- ---------- ---------- ---------- BACU000016/1-602 MGDRDEDRAN VKRKGRREKR ELLKRYTCEI IPDKSSLKPL LHIHTTADPN 51 100 ENSTTRP00000001051/1-549 ---------- ---------M ISPDPRPASG LARWAESYKT KYERWQETRE ENSP00000355991/1-551 ---------- ---------M ISPDPRPSPG LARWAESYEA KCERRQEIRE bmy_12969T0/1-324 ---------- ---------M ISPDPRPASG LARWAESYEA KCEHRQETRE ENSBTAP00000003691/1-554 ---------- ---------M IGPDPRPAPG LARWAESYEA KSERRQETRE BACU000016/1-602 PGSYSRNWKP STTGAREVIM ISPDPRPASG LARWAESYEA KCERRQETRE 101 150 ENSTTRP00000001051/1-549 NRRCRPNVTT CRQVGKVLRT QQREHLQRAR QQQFFRRRNL KVEEKGEAQS ENSP00000355991/1-551 SRRCRPNVTT CRQVGKTLRI QQREQLQRAR LQQFFRRRNL ELEEKGKAQH bmy_12969T0/1-324 SRRCRPNVTT CRQ------- ---------- ---------- ---------- ENSBTAP00000003691/1-554 SRRCRPNVTT CRLVGKAPRT QQREQLRRAR QQQFFRRRNL EVEEKGEAQS BACU000016/1-602 SRRCRPNVTT CRQAGKAPRT QQREQLQRAR QQQFFRRRNL KVEEKGKAQS 151 200 ENSTTRP00000001051/1-549 PQAGEPGPSR RQGQATDLKE PLSWANRISS PRQQVSGTSS EVFATQHQPP ENSP00000355991/1-551 PQAREQGPSR RPGQVTVLKE PLSCARRISS PREQVTGTSS EVFPAQHPPP bmy_12969T0/1-324 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003691/1-554 PPAREPGPSR RTGQATDLKE PLSWANRISS PRQQVSGTSC EVFATQHHPP BACU000016/1-602 PQSGEPGPSR RPGQAADVKE PLSWANRISS PRQQVSGTSS EVFATQHQPP 201 250 ENSTTRP00000001051/1-549 SGSWRDPADH LPSQAGGLPP QDPPIKKPPK HHHGTQTKAE ETQPTIKHDA ENSP00000355991/1-551 SGICRDLSDH LSSQAGGLPP QDTPIKKPPK HHRGTQTKAE G--PTIKNDA bmy_12969T0/1-324 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003691/1-554 SGAWRDPAGH CPTQAGGLPP QASPTKKAPK HHRGTQTKAG ETQSTIKNDA BACU000016/1-602 SGAWRDPADH LPSRAGGLPP QDSPIQKPPK HHRGTQTKAE ETQPTIKNDA 251 300 ENSTTRP00000001051/1-549 SQQTNYGVAV LDKEIIQLSE YLKEALQREL VLKQKMVILQ DLLSALIRAS ENSP00000355991/1-551 SQQTNYGVAV LDKEIIQLSD YLKEALQREL VLKQKMVILQ DLLSTLIQAS bmy_12969T0/1-324 ---------- ---EIIQLSE YLKEALQREL VLKQKMVILQ DLLSALIRAS ENSBTAP00000003691/1-554 SQQTNYGVAV LDKEIIQLSE YLKEALQREL ILKQKMVILQ DLLSTLIQAS BACU000016/1-602 SQQTNYGVAV LDKEIIQLSE YLKEALQREL VLKRKMVILQ DLLSALIRAS 301 350 ENSTTRP00000001051/1-549 DSSWKGQLNE DKLKGKLRSL ENQLYTCTQK YTPWGMNKVL LEMEDQKNIY ENSP00000355991/1-551 DSSWKGQLNE DKLKGKLRSL ENQLYTCTQK YSPWGMKKVL LEMEDQKNSY bmy_12969T0/1-324 DSSWKGQLNE DKLKGKLRSL ENQLYTCT-- ---------- ---------- ENSBTAP00000003691/1-554 DSTWKGQLNE DKLKGKLRSL ENQLYACTQK YSPWGMKKVL LEMEDQKNSY BACU000016/1-602 DSSWKGQLNE DKLKGKLRSL ENQLYTCTQK YTPWGMNKVL LEMEDQRISY 351 400 ENSTTRP00000001051/1-549 EQKAKESLQK VLEEKMSAEQ QLQSIQRSLA XXXXXXXXXX XXXXXXXXXX ENSP00000355991/1-551 EQKAKESLQK VLEEKMNAEQ QLQSTQRSLA LAEQKCEEWR SQYEALKEDW bmy_12969T0/1-324 ---------- ---------- -----QRSLA LAEKKCEEWK SQYEALKEDW ENSBTAP00000003691/1-554 EQKAKESLQK VLEEKMSAEQ QLQSTQRSLA LAEQKCEEWK SQYEALKEDW BACU000016/1-602 EQKAKESLQK VLEEKMSAEQ QLQSTQRSLA LAEKKCEEWK SQYEALKEDW 401 450 ENSTTRP00000001051/1-549 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355991/1-551 RTLGTQHREL ESQLHVLQSK LQGADSRDLQ MNQALRFLEN EHQQLQAKIE bmy_12969T0/1-324 RALGTQHREL ESQLHVLQSK LQGADSRDLQ RNQALRLLEN AHQELQAKIE ENSBTAP00000003691/1-554 RTLGTQHREL ESQLHVLQSK LQGADSRDSQ MNQALRLLES EHQELQARIE BACU000016/1-602 RALGTQHREL ESQLHVLQSK LQGADSRDLQ MNQALRLLED EHQELQAKIE 451 500 ENSTTRP00000001051/1-549 XXXXXXXXXX XXXXXXXXQL KRSEEEKLAL VTKVQQLQSL LQNQSLQLQE ENSP00000355991/1-551 CLQGDRDLCS LDTQDLQDQL KRSEAEKLTL VTRVQQLQGL LQNQSLQLQE bmy_12969T0/1-324 RLQGDRDLCS SDTQHLQDQL KRSEEEKLAL VTKVQQLQ-- ---------- ENSBTAP00000003691/1-554 CLQEDRDLCS SDTQHLQDQL KRSEEEKLAL VTKVQQLQSL LQNQSLQLQK BACU000016/1-602 RLQGDRDLCS SDTQHLQDQL KRSEEEKLAL VTKVQQLQ-- ---------- 501 550 ENSTTRP00000001051/1-549 QEKLLTKKDQ ALPGWSPKPS HNEV----PG KEKDWDFRDQ LQKKTLQLLA ENSP00000355991/1-551 QEKLLTKKDQ ALPVWSPKSF PNEVEPEGTG KEKDWDLRDQ LQKKTLQLQA bmy_12969T0/1-324 ---------- ----KKFHAN SNEYE----- -NSKAAMGTV LMTLVVVSPS ENSBTAP00000003691/1-554 QEKLLTKKDQ ALPVRSPEPS HNEVEPEGPG KEQDLDFRDE LQKKTLQLLA BACU000016/1-602 --------NQ ALPGWSPKPS HNEVEPEGPG KEKDWDFRDQ LQKKTLQLLA 551 600 ENSTTRP00000001051/1-549 KEKECKELHS ELDNLSDEYL SCLRKLQHCQ EELNQSQQLP PRRQCGRWLL ENSP00000355991/1-551 KEKECRELHS ELDNLSDEYL SCLRKLQHCR EELNQSQQLP PRRQCGRWLP bmy_12969T0/1-324 LPAQCRELHS ELDSLSDEYL SCLRKLQHCR EELNQSQQLP PRRQCGRWLL ENSBTAP00000003691/1-554 KEKECRELLS ELDNLSDEYL SCLRKLQHCR EELSQSQQPP PRRQCGRWLL BACU000016/1-602 KEKECRELHS ELDNLSDEYL SCLRKLQHCR EEMNQSQQLP PRRQCGRWLL 601 650 ENSTTRP00000001051/1-549 MLMALIAIAV AVFLANKDSL KL- ENSP00000355991/1-551 VLMVVIAAAL AVFLANKDNL MI- bmy_12969T0/1-324 MLMALIAIAV AVFLANKDSL KL- ENSBTAP00000003691/1-554 MLMALAAIAV AVMLANKDSL MLW BACU000016/1-602 LLMSLIAIAV AVFLANKDSL KL-