KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:54 2014 Check: 00 .. Name: ENSP00000309560/1-570 Len: 669 Check: 116 Weight: 1.00 Name: ENSBTAP00000003698/1-575 Len: 669 Check: 825 Weight: 1.00 Name: bmy_02894T0/1-616 Len: 669 Check: 9930 Weight: 1.00 Name: BACU013967/1-588 Len: 669 Check: 8142 Weight: 1.00 Name: ENSTTRP00000005531/1-424 Len: 669 Check: 9544 Weight: 1.00 // 1 50 ENSP00000309560/1-570 ----MAYEKS TDISDVSRSM FLYPWLEYPD KTKELRKAMA PVHLPLSCYQ ENSBTAP00000003698/1-575 ----MAYEKS VNISDINRAM FNCPWLEYPG RIKELRRAAA PVLLPWSCHQ bmy_02894T0/1-616 RRGWPTKNQS TSLTSTGRCS SAHGW----- ---NIQKGP- ---------K BACU013967/1-588 ----MAYEKS VTISDINRSM FKCPWLEYPE RTKELRRATA PVLLPLSCHQ ENSTTRP00000005531/1-424 ----MDYEKS VNISDINRSM FKCPWLEYPE RTKELRRATA PVLLPLSCHQ 51 100 ENSP00000309560/1-570 MPKEEFPPSP ECWRQHPSKP NSVPYCYFKK PEIYTHWHDL YDQREEREAE ENSBTAP00000003698/1-575 APKEEFPPSP ECWREHPSKP NAVPYCYYKK PELYTHWYTL YDRRKEREAQ bmy_02894T0/1-616 MPKEEFPPSP ECWRQHPSKP NSVPYCYSKQ PEIYTHWHAL YNQRKEXEAQ BACU013967/1-588 MPKEEFPPSP ECWRQHPSKP NSVPYCYSTQ PEIYTHWHAL YNQRKEREAQ ENSTTRP00000005531/1-424 MPKEEFPPSP ECWRQHPSKP NSVPYCYSKQ PEIYTHWHTL YNQQKEREAQ 101 150 ENSP00000309560/1-570 KMLRKMRDDC RYIKEVHQTH IKMFHLPMSK LTIKSEMRSR PLEPTQDPLK ENSBTAP00000003698/1-575 KTLRKMRDHP RYLKE--GTL SQKLRLPMSK LTRRSPVESK PLDPAGEPLK bmy_02894T0/1-616 KILWKMRDHP RYLKE--GTL IQKLHLPMSK LIVKPQMESK PLDPTGDPLK BACU013967/1-588 KILWKMRDRP RFLKE--GTL IQKLHLPMSK LIVKPQMESK PLDPAGDPLK ENSTTRP00000005531/1-424 KILWKMRDHP RYLTE--GTL IPKLHLPMSK LIIKPQMESK PSDPTGDPLK 151 200 ENSP00000309560/1-570 WQRLR----- ---------- ---------- ---------- ---------- ENSBTAP00000003698/1-575 WQRLK----- ---------- ---------- ---------- ---------- bmy_02894T0/1-616 WQRLKVRDHG SGENGETLFL WVPLPGAHTI LPPSVPACCL QMEGGEERGL BACU013967/1-588 WQRLK----- ---------- ---------- ---------- ---------- ENSTTRP00000005531/1-424 WQRLK----- ---------- ---------- ---------- ---------- 201 250 ENSP00000309560/1-570 ---------- ---------- ---------- ELTKSLESPR EDEQFYAAQA ENSBTAP00000003698/1-575 ---------- ---------- ---------- ELTESLKSPR EDEQLYAAQA bmy_02894T0/1-616 DWMSSFQFES LAVELYVSLS SLPLARFDGQ ELTESLKSPR EDEQLYAAQA BACU013967/1-588 ---------- ---------- ---------- ELTESLKSPR EDEQLYAAQA ENSTTRP00000005531/1-424 ---------- ---------- ---------- ELTESLKSPR EDEQLYAAQA 251 300 ENSP00000309560/1-570 LGCLRISDKF VMEALQQVAQ TGPEKVKYEA YRTLAILGCL NKHVIRALIK ENSBTAP00000003698/1-575 LGCLGVRDKF VMDALCQVAQ AGPEKVKYEA CRALAILGCL KKHVIQTLIK bmy_02894T0/1-616 LGCLGVRDKF IMEALWQVVS LGLHRVQERR KQSLRC--CL NKHVIQALIK BACU013967/1-588 LGCLGVRDKF IMEALWQVAQ TGPEKVKYEA CQTLAILGCL NKHVIQALIK ENSTTRP00000005531/1-424 LGCLGVRDKF ITEALWQVAQ TGPEKVKYEA CQTLAILGCL NKHVIQALIK 301 350 ENSP00000309560/1-570 QLKEKNEGQR METLTGLRMA LNSWAAVSKD K--------- --RTQVGDEG ENSBTAP00000003698/1-575 KLKGQNEGQK MDTLIALRTA LSSWAAVPRD Q--------- --RTQVEDEE bmy_02894T0/1-616 QLKGQNEAQR MDTLTALRVA LNSWAAVPKD Q--------- --RTQVEDGE BACU013967/1-588 QLKGQNEGQR MDTLTALRVS LNSWAAVPKD QVIGRRVSHW GERTQVEDGE ENSTTRP00000005531/1-424 QLKGQNEGQR MDTLTALRVA LNSWAAVPKD Q--------- --RTQIEDGE 351 400 ENSP00000309560/1-570 KLVPVLQTLI KKSSSEASLE AALCLGFLRP CSNMVQEFLL QCLCQGLKTQ ENSBTAP00000003698/1-575 KLVLALLMLI KKSGNKAAAE AALCLGFLRP HSNVAREYLL QCLCQGPKTQ bmy_02894T0/1-616 KLVPVLQMLI KKSGNKAAVE AALCLGFLRP CSSTAREYLL QCLHQGPKTQ BACU013967/1-588 KLVPVLQMLI KKSGNKAAVE AALCLGFLRP CSSTAREYLL HCLHQGPKTQ ENSTTRP00000005531/1-424 KLVPVLQMLI KKSGNKAAVE AALCLGFLRP CSSTAREYLL QCLHQGPKTQ 401 450 ENSP00000309560/1-570 RMKALRMLVK VMHVHSAPVI KAILDQLCSS SVLEDRFEAT QMLKTIGLEQ ENSBTAP00000003698/1-575 QMKALTVLVK IMGVHSATVV RSILDQLSCS SVLEHRFEAT QMLKAIGLEW bmy_02894T0/1-616 QMQALSMLVK IMGVHSATVI RTILDQLCYS SVLEHRFEAS QMLKTIGLEQ BACU013967/1-588 QMQALSMLVK IMGVHSATVI RTILDQLCYS SVLEHRFEAS QMLKTIGLEQ ENSTTRP00000005531/1-424 QMQALSMLVK IMGVHSATVI RTILDQLCYS SVLEHRFEAS QMLKTIGLEQ 451 500 ENSP00000309560/1-570 IQAQGLEELT FNLLRRKTHN EPFLAVRQAV AQTVEELKLK PTMMNLVEAQ ENSBTAP00000003698/1-575 IQAHGLEELT FDLLRRKTYN EPFFAIRQAV AETVEELKMK PMMLNLVEAQ bmy_02894T0/1-616 IQAQGLEGLT FDLLRRKTYN EPFFAMRQAV AETVEELKMK PTMMN----- BACU013967/1-588 IQAQGLEGLT FDLLRRKTYN EPFFAMRQAV AETVEELKMK PSMMNLVEAQ ENSTTRP00000005531/1-424 IQAQGLEGLT FDLLRRKTYN EPFFAMRQAV AETVEELKMK PTMMNLVEAQ 501 550 ENSP00000309560/1-570 LMNPDATARQ EAVISLGVLG IRSPQVFHLL LDLLDAENHQ AVKKSLQETL ENSBTAP00000003698/1-575 LMSSNAIARQ EAVISLSVLG IRSPQVFHLV LDMLDVEKNA SVKKSLQETL bmy_02894T0/1-616 ---------- -----LGALG IRSPQVFHLV LDMLDVEKSP SVKRSLQETL BACU013967/1-588 LMSSNATARQ EAVISLGALG IRSPQVFHLV LDMLDVEKSP SVKKSLQETL ENSTTRP00000005531/1-424 LMSSNATARQ EAVISL---- ---------- ---------- ---------- 551 600 ENSP00000309560/1-570 ILCASIDPWI QNKLKNKVLS VYEAPKTNVK AEPTRFQKEP ENPEELTIQD ENSBTAP00000003698/1-575 ILLASIDPWI QNKLKNKVLF VCEMPKTSMK VEFTRFRKEP ENPEETNIQD bmy_02894T0/1-616 ILWASIDPWI QNKLKNKVLF VYEVPKTSMN VEITRFRKEP EKPEELNIQD BACU013967/1-588 ILWASIDPWI QNKLKNKVLF VSEVAKTSMN VEITRFRKEP EKPEELNIQD ENSTTRP00000005531/1-424 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000309560/1-570 FRLAKLNPLF IAKSITKVGQ KK-------- -TPAFPPCCS KPRKHRPQVI ENSBTAP00000003698/1-575 FKLIELNPLF LTKSSAMLDR QKKLNPQKGS DTPGFLPSFS ISPKHQSQ-- bmy_02894T0/1-616 FQLAQLNPLF LTKSSATSDQ QKKLNAQKGS GTSAFPSCFS KPQKHKSQAT BACU013967/1-588 FQLAQLNPLF LTKSSATSDQ QKKLNAQKGS GTSAFPSCFS EAQKHKSQAT ENSTTRP00000005531/1-424 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000309560/1-570 GPWQPRIKKQ LRVLAEIAK ENSBTAP00000003698/1-575 GPWAQGIRKQ LQTFAETPN bmy_02894T0/1-616 GSWPRGIRKQ LRILAETSN BACU013967/1-588 GSWPRGIRKQ LRILAETSN ENSTTRP00000005531/1-424 ---------- ---------