KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:54 2014 Check: 00 .. Name: ENSP00000355800/1-807 Len: 809 Check: 4010 Weight: 1.00 Name: ENSBTAP00000003701/1-803 Len: 809 Check: 9899 Weight: 1.00 Name: ENSTTRP00000009612/1-806 Len: 809 Check: 2533 Weight: 1.00 Name: bmy_10526T0/1-627 Len: 809 Check: 117 Weight: 1.00 Name: BACU001666/1-804 Len: 809 Check: 2865 Weight: 1.00 // 1 50 ENSP00000355800/1-807 MMDSPFLELW QSKAVSIREQ LGLGDRPNDS YCYNSAKNST VLQGVTFGGI ENSBTAP00000003701/1-803 MTESPFLELW QSRAVAIPER LGIGDQPNDS YCYNSAKNST VLQGVTFGGI ENSTTRP00000009612/1-806 MTDSPFLELW QSRAVAIRQR LGIGDQPNDS YCYNSAKNST VLQGVTFGGI bmy_10526T0/1-627 ---------- ---------- ---------- ---------- -----MAGGV BACU001666/1-804 MTDSPLLELW QSRAVAIRER LGIGDQPNDS YCYNSAKNST VLQGVTFGGI 51 100 ENSP00000355800/1-807 PTVLLIDVSC FLFLILVFSI IRRRFWDYGR IALVSEADSE SRFQRLSSTS ENSBTAP00000003701/1-803 PTVLFIDVTC FLFLIAAFSI IRRKFWDYGR IALVSEGNSE SRFRRLSS-S ENSTTRP00000009612/1-806 PTVLFIDVSC FLFLVLVFSI IRRNFWDYGR IALVSEANSE SRFQRLSS-S bmy_10526T0/1-627 PP-------- ---------- ---------- ---------- ---------- BACU001666/1-804 PTVLFIDVTC FLFLILVFSI IRRKFWDYGR IALVSEADSE SRFQRLSS-S 101 150 ENSP00000355800/1-807 SSGQQDFENE LGCCPWLTAI FRLHDDQILE WCGEDAIHYL SFQRHIIFLL ENSBTAP00000003701/1-803 SSGQQDFESE MGLCSWLTAI FRLHDDQILE WCGEDAIHYL SFQRHIIFLL ENSTTRP00000009612/1-806 SSGQQDFESE LGCCPWLTAV FRLQDDQILE WCGEDAIHYL SFQRHIIFLL bmy_10526T0/1-627 ---------- ---------- ---------- ---------- ---------- BACU001666/1-804 SSGQQDFESE LGCCPWLTAI FRLQDDQIME WCGEDAIHYL SFQRHIIFLL 151 200 ENSP00000355800/1-807 VVVSFLSLCV ILPVNLSGDL LDKDPYSFGR TTIANLQTDN DLLWLHTIFA ENSBTAP00000003701/1-803 VVVSCLSLCV ILPVNLSGDL LDKDPYSFGR TTIANLQTDN NLLWLHTVFA ENSTTRP00000009612/1-806 VVVSFLSLCV ILPVNLSGSL LDKDPYSFGR TTIANLQTDN DLLWLHTVFA bmy_10526T0/1-627 ---------- ---------- ---------- -----LPPSN DLLWLHTVFS BACU001666/1-804 VVVSFLSLCV ILPVNLSGSL LDKDPYSFGR TTVANLQTDN NLLWLHTVFS 201 250 ENSP00000355800/1-807 VIYLFLTVGF MRHHTQSIKY KEENLVRRTL FITGLPRDAR KETVESHFRD ENSBTAP00000003701/1-803 ILYLILTVVF MRHHTQSIKY KEESLVRRTL FVTGLPRHAK KETVESHFRD ENSTTRP00000009612/1-806 ILYLILTVGF MRHHTRSIKY KEENLVRRTL FITGLSRDAK KETVESHFRD bmy_10526T0/1-627 ILYLILTVGF MRHHTQSIKY KEENLVRRTL FITGLPRDAK KETVERHFQD BACU001666/1-804 ILYLILTVGF MRHHTQSIKY KEENLVRRTL FITGLPRDTK KETVESHFRD 251 300 ENSP00000355800/1-807 AYPTCEVVDV QLCYNVAKLI YLCKEKKKTE KSLTYYTNLQ VKTGQRTLIN ENSBTAP00000003701/1-803 AYPTCEVVEV QLCYDVAKLI YLCKERKKTE KSLTYYTNLQ VKTGQRTFIN ENSTTRP00000009612/1-806 AYPTCEVVEV QLCYNVAKLI YLCRERKKTE KSLTYYTNLQ MKTGQQTLIN bmy_10526T0/1-627 AYPTCEVVEV QLCYNVAKLI YLCRERKKTE KSLTYYTNLQ VKTGQRTLIN BACU001666/1-804 AYPTCEVVEV QLCYNVAKLI YLCRERKKTE KSLTYYTNLQ VKTGQRTLIN 301 350 ENSP00000355800/1-807 PKPCGQFCCC EVLGCEWEDA ISYYTRMKDR LLERITEEER HVQDQPLGMA ENSBTAP00000003701/1-803 PKPCGQFCCC EVRGCEWEDA ISYYTRMKDG LMERITEEEC RVQDQPLGMA ENSTTRP00000009612/1-806 PKPCGQFCCC EVKGCEWEDA IAYYTRMKDR LTERITEEEC RVQDQPLGMA bmy_10526T0/1-627 PKPCGQFCCC EVQGCEWEDA ISYYTRMKDR LMERITEEEC RVQDQSLGMA BACU001666/1-804 PRPCGQFCCC EVQGCEWEDA ISYYTRMKDR LMERITEEEC RVQDQSLGMA 351 400 ENSP00000355800/1-807 FVTFQEKSMA TYILKDFNAC KCQSLQCKGE PQPSSHSREL YTSKWTVTFA ENSBTAP00000003701/1-803 FVTFQEKSMA TYVLKDFNAC KCQGLQCKGE PQPSSHGREL RISRWSVTFA ENSTTRP00000009612/1-806 FVTFQEKSMA TYILKDFNAC KCQGLQCKSD PQPSSHSREL CISKWTVSFA bmy_10526T0/1-627 FVTFQEKSMA TYILKDFNAC KCQGLQCKSD PQPSSHSREL CISKWTVSFA BACU001666/1-804 FVTFQEKSMA TYILKDFNAC KCQGLQCKSD PQPSSHSREL CVSKWTVSFA 401 450 ENSP00000355800/1-807 ADPEDICWKN LSIQGLRWWL QWLGINFTLF LGLFFLTTPS IILSTMDKFN ENSBTAP00000003701/1-803 AYPEDICWKN LSIQGFRWWF QWLGINFILF VVLFFLTTPS IILSTMDKFN ENSTTRP00000009612/1-806 AYPEDICWKN LSIQGLRWWF QWLGINFTLF LGLFFLTTPS IILSTMDKFN bmy_10526T0/1-627 VYPKDICWKN LSIQGLRWWF QWLGINFTLF LGLFFLTTPS IILSTMDKFN BACU001666/1-804 AYPEDICWKN LSIQGLRWWF QWLGINFTLS LGLFFLTTPS IILSTMDKFN 451 500 ENSP00000355800/1-807 VTKPIHALNN PIISQFFPTL LLWSFSALLP SIVYYSTLLE SHWTKSGENQ ENSBTAP00000003701/1-803 VTKPIHALNN PVISQFFPTL LLWSFSALLP TIVYYSTLLE SHWTKSGENW ENSTTRP00000009612/1-806 VTKPIHALND PIISQFFPTL LLWSFSALLP TVVYYSTVLE SHWTKSGENR bmy_10526T0/1-627 VTKPIHALND PIISQFFPTL LLWSFSALLP TVVYYSTLLE CHWTKSGENR BACU001666/1-804 VTKPIHALND PIISQFFPTL LLWSFSALLP TVVYYSTLLE RHWTKSGENR 501 550 ENSP00000355800/1-807 IMMTKVYIFL IFMVLILPSL GLTSLDFFFR WLFDKTSSEA SIRLECVFLP ENSBTAP00000003701/1-803 IMMTKVYIFL IFMVLILPSL GLTSLDFFFR WLFDKTSSEA SIRLECVFLP ENSTTRP00000009612/1-806 IMMTKVYIFL IFMVLILPSL GLTSLDFFFR WLFDKTSSEA SVRLECVFLP bmy_10526T0/1-627 IMMTKVYIFL IFMVLILPSL GLTSLDFFFR WLFDKTSSEA SIRLECVFLP BACU001666/1-804 IMMTKVYIFL IFMVLILPSL GLTSLDFFFR WLFDKTSSEA SIRLECVFLP 551 600 ENSP00000355800/1-807 DQGAFFVNYV IASAFIGNGM ELLRLPGLIL YTFRMIMAKT AADRRNVKQN ENSBTAP00000003701/1-803 DQGAFFVNYV IASAFIGNGM ELLRLPGLIL YTFRMVMAKT AADRKNVKQN ENSTTRP00000009612/1-806 DQGAFFVNYV IASAFIGNGM ELLRLPGLIL YTFRMVMAKT AADRRNIKQN bmy_10526T0/1-627 DQGAFFVNYV IASAFIGNGM ELLRLPGLIL YTFRMLMAKT VADRRNIKQN BACU001666/1-804 DQGAFFVNYV IASAFIGNGM ELLRLPGLIL YTFRMVMAKT AADRRNIKQN 601 650 ENSP00000355800/1-807 QAFQYEFGAM YAWMLCVFTV IVAYSITCPI IAPFGLIYIL LKHMVDRHNL ENSBTAP00000003701/1-803 QAFEYEFGAM YAWMLCVFTV IMAYSITCPI IVPFGLIYIL LKHMVDRHNL ENSTTRP00000009612/1-806 QAFEYEFGAM YAWMLCVFTV IMAYSITCPI IVPFGLIYIL LKHMVDRHNL bmy_10526T0/1-627 QAFEYEFGAM YAWMLCVFTV IMAYSITCPI IVPFGLIYIL LKHMVDRHNL BACU001666/1-804 QAFEYEFGAM YAWMLCVFTV IMAYSITCPI IVPFGLIYIL LKHMVDRHNL 651 700 ENSP00000355800/1-807 YFVYLPAKLE KGIHFAAVNQ ALAAPILCLF WLYFFSFLRL GMKAPATLFT ENSBTAP00000003701/1-803 YFAYLPAKLE KRIHFAAVNQ ALAAPILCLF WLYFFSFLRL GLKAPLTLFT ENSTTRP00000009612/1-806 YFAYLPAKLE KRIHFAAVNQ ALAAPILCLF WLYFFSFLRL GLKAPLTVFT bmy_10526T0/1-627 YFAYLPAKLE KRIHFAAVNQ ALAAPILCLF WLYFFSFLRL GLKAPLTLFT BACU001666/1-804 YFAYLPAKLE KRIHFAAVNQ ALAAPILCLF WLYFFSFLRL GLKAPLTLFT 701 750 ENSP00000355800/1-807 FLVLLLTILV CLAHTCFGCF KHLSPLNYKT EEPASDKGSE AEAHMPPPFT ENSBTAP00000003701/1-803 FLVLLLTILV CLAYTCFGCF KHLSPLNYKT EESASDKGNE AGAHVPPPFT ENSTTRP00000009612/1-806 FLVLLLTILV CLAYTCFGCF KHLSPLNYKT EESASDKGSE AGAHVPSPFT bmy_10526T0/1-627 FLALLLTILV CLAYTCFGCF KHLSPLNYKT EESASDKGSE AGAHVPSPFT BACU001666/1-804 FLALLLTILV CLAYTCFGCF KHLSPLNYKT EESASDKGSE AGAHVPSPFR 751 800 ENSP00000355800/1-807 PYVPRILNGL ASERTALSPQ QQQQQTYG-- AIHNISGTIP GQCLAQSATG ENSBTAP00000003701/1-803 PYVPRILNSS SSEKTALSP- --QQQTYG-- AINNISGTVA GQCLAQSPED ENSTTRP00000009612/1-806 SYVPRILNSL SSEKTALSP- -QQQQTYGAI AIHNISGTVP RQCLDQSPAD bmy_10526T0/1-627 SYVPWILNSL SSEKTALSP- -QQQQTYG-- AIHNISGTIP GQCLDQSPAD BACU001666/1-804 SYVPRILNSL SSEKTALSP- -QQQQTYG-- AIHNISGTVP GQCLDQSPAD 801 850 ENSP00000355800/1-807 SVAAAPQEA ENSBTAP00000003701/1-803 RVAAADQGD ENSTTRP00000009612/1-806 GMAAARQEA bmy_10526T0/1-627 SVAAACQEA BACU001666/1-804 SVAAACQET