KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:56 2014 Check: 00 .. Name: bmy_18943T0/1-186 Len: 312 Check: 522 Weight: 1.00 Name: ENSP00000283646/1-311 Len: 312 Check: 4001 Weight: 1.00 Name: ENSBTAP00000003719/1-306 Len: 312 Check: 6364 Weight: 1.00 Name: BACU005884/1-236 Len: 312 Check: 4488 Weight: 1.00 Name: ENSTTRP00000000826/1-308 Len: 312 Check: 670 Weight: 1.00 // 1 50 bmy_18943T0/1-186 ---------- ---------- ---------- ---------- ---------- ENSP00000283646/1-311 MQRPGPFSTL YGRVLAPLPG RAGGAASGGG GNSWDLPGSH VRLPGRAQSG ENSBTAP00000003719/1-306 MQRPGPFSTL YGRVLAPLPG RAGGAASGGG GNSWGVPGSH VQLPGRSQFG BACU005884/1-236 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000826/1-308 MQRPGPFSTL YGRVLAPLPG RAGGAASGGG GSSWGVPGSH VQLPGRAQFG 51 100 bmy_18943T0/1-186 ---------- ---------- ---------- ---------- ---------- ENSP00000283646/1-311 TRGGAGNTST SCGDSNSICP APSTMSKAEE AKKLAGRAAV ENHVRNNQVL ENSBTAP00000003719/1-306 A----GSTST GVRETNIVCP GPSAMSKAEE AKKLAGRAAV ENHVRNNQVL BACU005884/1-236 ---------- ---------- ----MSKAEE AKKLAGRAAV ENHVRNNQVL ENSTTRP00000000826/1-308 T----GSTST AGGDANSVCP APSTMSKAEE AKKLAGRAAV ENHVRNNQVL 101 150 bmy_18943T0/1-186 ---------M AFEK-----K FSILWFLC-- ----ARQLIL QYGLTLSDLD ENSP00000283646/1-311 GIGSGSTIVH AVQRIAERVK QENLNLVCIP TSFQARQLIL QYGLTLSDLD ENSBTAP00000003719/1-306 GIGSGSTIVH AVQRIAERVE QENLKLVCIP TSFQARQLIL QYGLTLSDLD BACU005884/1-236 GIGSGSTIVH AVQRIAERVK QENLNLVCIP TSFQARQLIL QYGLTLSDLD ENSTTRP00000000826/1-308 GIGSGSTIVH AVQRIAERVK QENLNLVCIP TSFQARQLIL QYGLTLSDLD 151 200 bmy_18943T0/1-186 RHPEF-LSYL PLCSFAASSP SPRG---CLT QEKIVAGNAS RFIVIADFRK ENSP00000283646/1-311 RHPEIDLAID GADEVDADLN LIKGGGGCLT QEKIVAGYAS RFIVIADFRK ENSBTAP00000003719/1-306 RHPEIDLAID GADEVDADLN LIKGGGGCLT QEKIVAGNAS RFIVIADFRK BACU005884/1-236 RHPEIDLAID GADEVDADLN LIKGGGGCLT QEKIVAGNAS RFIVIADFRK ENSTTRP00000000826/1-308 RHPEIDLAID GADEVDADLN LIKGGGGCLT QEKIVAGNAS RFIVIADFRK 201 250 bmy_18943T0/1-186 DSKHLGDQWH KGIPIEVIPM AYVPVSRAVT QKFGGVIELR MAVSKAGPVV ENSP00000283646/1-311 DSKNLGDQWH KGIPIEVIPM AYVPVSRAVS QKFGGVVELR MAVNKAGPVV ENSBTAP00000003719/1-306 DSKNLGDQWH KGIPIEVIPM AYVPVSRTVT QKFGGVIELR MAVNKAGPVV BACU005884/1-236 DSKNLGDQWH KGIPIEVIPM AYVPVSRAVT QKFGGVIELR MAVNKAGPVV ENSTTRP00000000826/1-308 DSKNLGDQWH KGIPIEVIPM AYVPVSRAVT QKFGGVIELR MAVNKAGPVV 251 300 bmy_18943T0/1-186 TDNGNFILDW KFDRVHKWSE VNTTIKMIPG VVDTGLFINM AERVYFGMQD ENSP00000283646/1-311 TDNGNFILDW KFDRVHKWSE VNTAIKMIPG VVDTGLFINM AERVYFGMQD ENSBTAP00000003719/1-306 TDNGNFILDW KFDRVHKWSE VNIAIKMIPG VVDTGLFINM AERVYFGMQD BACU005884/1-236 TDNGNFILDW KFDRVHKWSE VNPTIKMIPG VVDTGLFINM AERVYFGMQD ENSTTRP00000000826/1-308 TDNGNFILDW KFDRVHKWSE VNTTIKMIPG VVDTGLFINM AERVYFGMQD 301 350 bmy_18943T0/1-186 GSVNMREKPF -- ENSP00000283646/1-311 GSVNMREKPF C- ENSBTAP00000003719/1-306 GSVNMREKPF -- BACU005884/1-236 GSVNMREKPF -- ENSTTRP00000000826/1-308 GSVNMREKPF YW