KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:59 2014 Check: 00 .. Name: ENSTTRP00000000521/1-1324 Len: 1351 Check: 7852 Weight: 1.00 Name: bmy_02277T0/1-705 Len: 1351 Check: 5102 Weight: 1.00 Name: ENSP00000307272/1-1335 Len: 1351 Check: 40 Weight: 1.00 Name: BACU011600/1-1351 Len: 1351 Check: 820 Weight: 1.00 Name: ENSBTAP00000003739/1-1335 Len: 1351 Check: 316 Weight: 1.00 // 1 50 ENSTTRP00000000521/1-1324 MESEMLQSPL LGLGDEDEAD LTDWNLPLAF MKKRHCEKIE GSKSLAQSWR bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 MESEMLQSPL LGLGEEDEAD LTDWNLPLAF MKKRHCEKIE GSKSLAQSWR BACU011600/1-1351 MESEMLQSPL LGLGEEDEAD LTDWNLPLAF MKKRHCEKIE GSKSLAQSWR ENSBTAP00000003739/1-1335 MESEMLQSPL LGLGEEDEAD LTDWNLPLAF MKKRHCEKIE GSKSLAQSWR 51 100 ENSTTRP00000000521/1-1324 MKDRXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP LSMGPQKALE bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 MKDRMKTVSV ALVLCLNVGV DPPDVVKTTP CARLECWIDP LSMGPQKALE BACU011600/1-1351 MKDRMKTVSV ALVLCLNVGV DPPDVVKTTP CARLECWIDP LSMGPQKALE ENSBTAP00000003739/1-1335 MKDRMKTVSV ALVLCLNVGV DPPDVVKTTP CARLECWIDP LSMGPQKALE 101 150 ENSTTRP00000000521/1-1324 TIGANLQKQY ENWQPRARYK QSLDPTVDEV KKLCTSLRRN AKEERVLFHY bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 TIGANLQKQY ENWQPRARYK QSLDPTVDEV KKLCTSLRRN AKEERVLFHY BACU011600/1-1351 TIGANLQKQY ENWQPRARYK QSLDPTVDEV KKLCTSLRRN AKEERVLFHY ENSBTAP00000003739/1-1335 TIGANLQKQY ENWQPRARYK QSLDPTVDEV KKLCTSLRRN AKEERVLFHY 151 200 ENSTTRP00000000521/1-1324 NGHGVPRPTV NGEIWVFNKN YTQYIPLSIY DLQTWMGSPS IFVYDCSNAG bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 NGHGVPRPTV NGEVWVFNKN YTQYIPLSIY DLQTWMGSPS IFVYDCSNAG BACU011600/1-1351 NGHGVPRPTV NGEIWVFNKN YTQYIPLSIY DLQTWMGSPS IFVYDCSNAG ENSBTAP00000003739/1-1335 NGHGVPRPTV NGEIWVFNKN YTQYIPLSIY DLQTWMGSPS IFVYDCSNAG 201 250 ENSTTRP00000000521/1-1324 LIVKSFKQFA LQREQELEVA AINPNHPLAQ MPLPPSMKNC IQLAACEANE bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 LIVKSFKQFA LQREQELEVA AINPNHPLAQ MPLPPSMKNC IQLAACEATE BACU011600/1-1351 LIVKSFKQFA LQREQELEVA AINPNHPLAQ MPLPPSMKNC IQLAACEANE ENSBTAP00000003739/1-1335 LIVKSFKQFA LQREQELEVA AINPNHPLAQ MPLPPSMKNC IQLAACEANE 251 300 ENSTTRP00000000521/1-1324 LLPMIPDLPA DLFTSCLTTP IKIALRWFCM QKCVSLVPGV TLDLIEKIPG bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 LLPMIPDLPA DLFTSCLTTP IKIALRWFCM QKCVSLVPGV TLDLIEKIPG BACU011600/1-1351 LLPMIPDLPA DLFTSCLTTP IKIALRWFCM QKCVSLVPGV TLDLIEKIPG ENSBTAP00000003739/1-1335 LLPMIPDLPA DLFTSCLTTP IKIALRWFCM QKCVSLVPGV TLDLIEKIPG 301 350 ENSTTRP00000000521/1-1324 RLNDRRTPLG ELNWIFTAIT DTIAWNVLPR DLFQKLFRQD LLVASLFRNF bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 RLNDRRTPLG ELNWIFTAIT DTIAWNVLPR DLFQKLFRQD LLVASLFRNF BACU011600/1-1351 RLNDRRTPLG ELNWIFTAIT DTIAWNVLPR DLFQKLFRQD LLVASLFRNF ENSBTAP00000003739/1-1335 RLNDRRTPLG ELNWIFTAIT DTIAWNVLPR DLFQKLFRQD LLVASLFRNF 351 400 ENSTTRP00000000521/1-1324 LLAERIMRSY NCTPVSSPRL PPTYMHAMXX XXXXXXXXXX XXXXXXXXXX bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 LLAERIMRSY NCTPVSSPRL PPTYMHAMWQ AWDLAVDICL SQLPTIIEEG BACU011600/1-1351 LLAERIMRSY NCTPVSSPRL PPTYMHAMWQ AWDLAVDICL SQLPTIIEEG ENSBTAP00000003739/1-1335 LLAERIMRSY NCTPVSSPRL PPTYMHAMWQ AWDLAVDICL SQLPTIIEEG 401 450 ENSTTRP00000000521/1-1324 XXXXHSPFFA EQLTAFQVWL TMGVENRNPP EQLPIVLQVL LSQVHRLRAL bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 TAFRHSPFFA EQLTAFQVWL TMGVENRNPP EQLPIVLQVL LSQVHRLRAL BACU011600/1-1351 TAFRHSPFFA EQLTAFQVWL TMGVENRNPP EQLPIVLQVL LSQVHRLRAL ENSBTAP00000003739/1-1335 TAFRHSPFFA EQLTAFQVWL TMGVENRNPP EQLPIVLQVL LSQVHRLRAL 451 500 ENSTTRP00000000521/1-1324 DLLGRFLDLG PWAVSLALSV GIFPYVLKLL QSSARELRPL LVFIWAKILA bmy_02277T0/1-705 ---------- ---------- ---------- ---------- ---------- ENSP00000307272/1-1335 DLLGRFLDLG PWAVSLALSV GIFPYVLKLL QSSARELRPL LVFIWAKILA BACU011600/1-1351 DLLGRFLDLG PWAVSLALSV GIFPYVLKLL QSSARELRPL LVFIWAKILA ENSBTAP00000003739/1-1335 DLLGRFLDLG PWAVSLALSV GIFPYVLKLL QSSARELRPL LVFIWAKILA 501 550 ENSTTRP00000000521/1-1324 VDSSCQADLV KDNGHKYFLS VLADPYMPAE HRTMTAFILA VIVNSYNTGQ bmy_02277T0/1-705 ---------- ---------- ------MPAE HRTMTAFILA VIVNSYNTGQ ENSP00000307272/1-1335 VDSSCQADLV KDNGHKYFLS VLADPYMPAE HRTMTAFILA VIVNSYHTGQ BACU011600/1-1351 VDSSCQADLV KDNGHKYFLS VLADPYMPAE HRTMTAFILA VIVNSYNTGQ ENSBTAP00000003739/1-1335 VDSSCQADLV KDNGHKYFLS VLADPYMPAE HRTMTAFILA VIVNSYNTGQ 551 600 ENSTTRP00000000521/1-1324 EACLQGNLIA ICLEQLNDPH PLLRQWVAIC LGRIWQNFDS ARWCGVRDSA bmy_02277T0/1-705 EACLQGNLIA ICLEQLNDPH PLLRQWVAIC LGRIWQNFDS ARWCGVRDSA ENSP00000307272/1-1335 EACLQGNLIA ICLEQLNDPH PLLRQWVAIC LGRIWQNFDS ARWCGVRDSA BACU011600/1-1351 EACLQGNLIA ICLEQLNDPH PLLRQWVAIC LGRIWQNFDS ARWCGVRDSA ENSBTAP00000003739/1-1335 EACLQGNLIA ICLEQLNDPH PLLRQWVAIC LGRIWQNFDS ARWCGVRDSA 601 650 ENSTTRP00000000521/1-1324 HEKLCSLLSD PIPEVRCAAV FALGTFVGNS AERTDHSTTI DHNVAMMLAQ bmy_02277T0/1-705 HEKLCSLLSD PIPEVRCAAV FALGTFVGNS AERTDHSTTI DHNVAMMLAQ ENSP00000307272/1-1335 HEKLYSLLSD PIPEVRCAAV FALGTFVGNS AERTDHSTTI DHNVAMMLAQ BACU011600/1-1351 HEKLCSLLSD PIPEVRCAAV FALGTFVGNS AERTDHSTTI DHNVAMMLAQ ENSBTAP00000003739/1-1335 HEKLCSLLSD PIPEVRCAAV FALGTFVGNS AERTDHSTTI DHNVAMMLAQ 651 700 ENSTTRP00000000521/1-1324 LINDGSPVVR K------SHL VVQYESNFCT VALQFIEEEK NYPLPSPATT bmy_02277T0/1-705 LINDGSPVVR KELVVALSHL VVQYESNFCT VALQFMEEEK NYPLPSPATT ENSP00000307272/1-1335 LVSDGSPMVR KELVVALSHL VVQYESNFCT VALQFIEEEK NYALPSPATT BACU011600/1-1351 LINDGSPVVR KELVVALSHL VVQYESNFCT VALQFMEEEK NYPLPSPATT ENSBTAP00000003739/1-1335 LINDGSPVVR KELVVALSHL VVQYESNFCT VALQFMEEEK NYPLPSPATT 701 750 ENSTTRP00000000521/1-1324 EGGSLTPVRD SPCTPRLRSV SSYGNIRAVT TARSLNKSLQ NLSLTEESGG bmy_02277T0/1-705 EGGSLTPVRD SPCTPRLRSV SSYGNIRAVT TARSLNKSLQ NLSLTEESGG ENSP00000307272/1-1335 EGGSLTPVRD SPCTPRLRSV SSYGNIRAVA TARSLNKSLQ NLSLTEESGG BACU011600/1-1351 EGGSLTPVRD SPCTPRLRSV SSYGNIRAVT TARSLNKSLQ NLSLTEESGG ENSBTAP00000003739/1-1335 EGGSLTPVRD SPCTPRLRSV SSYGNIRAVT TARNLNKSLQ NLSLTEETGG 751 800 ENSTTRP00000000521/1-1324 SVAFSPGNLS TSSSASSTLG SPENEEYILS FETIDKMRRV SSYSSLNSLI bmy_02277T0/1-705 SVAFSPGNLS TSSSASSTLG SPENEEYILS FETIDKMRRV SSYSSLNSLI ENSP00000307272/1-1335 AVAFSPGNLS TSSSASSTLG SPENEEHILS FETIDKMRRA SSYSSLNSLI BACU011600/1-1351 SVAFSPGNLS TSSSASSTLG SPENEEYILS FETIDKMRRV SSYSSLNSLI ENSBTAP00000003739/1-1335 SVAFSPGNLS TSSSASSTLG SPENEEYILS FETIDKMRRV SSYSSLNSLI 801 850 ENSTTRP00000000521/1-1324 GVSFNSVYTQ IWRVLLHLAA DPYPDVSDLA MKVLNSIAYK ATVNARPQRI bmy_02277T0/1-705 GVSFNSVYTQ IWRVLLHLAA DPYPDVSDLA MKVLNSIAYK ATVNARPQRI ENSP00000307272/1-1335 GVSFNSVYTQ IWRVLLHLAA DPYPEVSDVA MKVLNSIAYK ATVNARPQRV BACU011600/1-1351 GVSFNSVYTQ IWRVLLHLAA DPYPDVSDLA MKVLNSIAYK ATVNARPQRI ENSBTAP00000003739/1-1335 GVSFNSVYTQ IWRVLLHLAA DPYPDVSDLA MKVLNSIAYK ATVNARPQRI 851 900 ENSTTRP00000000521/1-1324 LTTSSLTQSA PASPTNKGIH IHQAGGSPPT SSASSSSLTN DVAKQPVSRD bmy_02277T0/1-705 LTTSSLTQSA PASPTNKGIH IHQAGGSPPT SSASSSSLTN DVAKQPVSRD ENSP00000307272/1-1335 LDTSSLTQSA PASPTNKGVH IHQAGGSPPA SSTSSSSLTN DVAKQPVSRD BACU011600/1-1351 LTTSSLTQSA PASPTNKGIH IHQAGGSPPT SSASSSSLTN DVAKQPVSRD ENSBTAP00000003739/1-1335 LSTSSLTQSA PASPTNKGIH IHQAGGSPPT SSASSSSLTN DVAKQPVSRD 901 950 ENSTTRP00000000521/1-1324 LPAGRPGTTG PVAVQYTPHS HQFPRTRKMF DKGPDQTTDH PDDAAGH-SF bmy_02277T0/1-705 LPAGRPGTTG PVAVQYTPHS HQFPRTRKMF DKGPDQTTDD PDDAAGHKSF ENSP00000307272/1-1335 LPSGRPGTTG PAGAQYTPHS HQFPRTRKMF DKGPEQTADD ADDAAGHKSF BACU011600/1-1351 LPAGRPGTTG PVAVQYTPHS HQFPRTRKMF DKGPDQTTDD PDDAAGHKSF ENSBTAP00000003739/1-1335 LPPGRPGATG PVGVQYTPHS HQFPRTRKMF DKGPDQTTDD PDDTAGHKSF 951 1000 ENSTTRP00000000521/1-1324 IFDTMPKGFC NWSAR-LXXX XXXIPEEHDL ESQIRKEREW RFLRNTRVRK bmy_02277T0/1-705 XSATMQTGFC DWSARYFAQP VMKIPEEHDL ESQIRKEREW RFLRNTRVRK ENSP00000307272/1-1335 ISATVQTGFC DWSARYFAQP VMKIPEEHDL ESQIRKEREW RFLRNSRVRR BACU011600/1-1351 ISATMQTGFC DWSARYFAQP VMKIPEEHDL ESQIRKEREW RFLRNTRVRK ENSBTAP00000003739/1-1335 ISATMQTGFC DWSARYFAQP VMKIPEEHDL ESQIRKEREW RFLRNTRVRK 1001 1050 ENSTTRP00000000521/1-1324 QAQQLIQKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFWD bmy_02277T0/1-705 QAQQLIQKGI TRLDDQIFLN RNPGVPSVVK FHPFTPCVAV ADKDSICFWD ENSP00000307272/1-1335 QAQQVIQKGI TRLDDQIFLN RNPGVPSVVK FHPFTPCIAV ADKDSICFWD BACU011600/1-1351 QAQQLIQKGI TRLDDQIFLN RNPGVPSVVK FHPFTPCVAV ADKDSICFWD ENSBTAP00000003739/1-1335 QAQQLIQKGI TRLDDQIFLN RNPGVPSVVK FHPFTPCVAV ADKDSICFWD 1051 1100 ENSTTRP00000000521/1-1324 WEKGEKLDYF HNGNPRYTRV TAMEYLNGQD CSLLLTATDD GVIRVWK-LA bmy_02277T0/1-705 WEKGEKLDYF HNGNPRYTRV TAMEYLNGQD CSLLLTATDD GAIRVWKNFA ENSP00000307272/1-1335 WEKGEKLDYF HNGNPRYTRV TAMEYLNGQD CSLLLTATDD GAIRVWKNFA BACU011600/1-1351 WEKGEKLDYF HNGNPRYTRV TAMEYLNGQD CSLLLTATDD GAIRVWKNFA ENSBTAP00000003739/1-1335 WEKGEKLDYF HNGNPRYTRV TAMEYLNGQD CSLLLTATDD GAIRVWKNFA 1101 1150 ENSTTRP00000000521/1-1324 DLEKNPEMVT -WQELSDMLP TR-------- ---------G AGMVVDWEQE bmy_02277T0/1-705 DLEKNPEMVT AWQGLSDMLP TTR------- ---------G AGMVVDWEQE ENSP00000307272/1-1335 DLEKNPEMVT AWQGLSDMLP TTR------- ---------G AGMVVDWEQE BACU011600/1-1351 DLEKNPEMVT AWQGLSDMLP TTRGLARKVS IFLDRSKQGG AGMVVDWEQE ENSBTAP00000003739/1-1335 DLEKNPEMVT AWQGLSDMLP TTR------- ---------G AGMVVDWEQE 1151 1200 ENSTTRP00000000521/1-1324 TGLLMSSGDV RIVRIWDTDR EMKVQDIPTG ADSCVTSLSC DSHRSLIVAG bmy_02277T0/1-705 TGLLMSSGDV RIVRIWDTDR EMKVQMEP-- -----DSLWG PAPQALTASP ENSP00000307272/1-1335 TGLLMSSGDV RIVRIWDTDR EMKVQDIPTG ADSCVTSLSC DSHRSLIVAG BACU011600/1-1351 TGLLMSSGDV RIVRIWDTDR EMKVQDIPTG ADSCVTSLSC DSHRSLIVAG ENSBTAP00000003739/1-1335 TGLLMSSGDV RIIRIWDTDR EMKVQDIPTG ADSCVTSLSC DSHRSLIVAG 1201 1250 ENSTTRP00000000521/1-1324 LGDGSIRVYD RRMALSECRV MTYREHTAWV VKAYLQKHPE GHIMSVSVNG bmy_02277T0/1-705 V--------E RKAAAP--RQ GDERTHG--- ---------- GCKRDPAASG ENSP00000307272/1-1335 LGDGSIRVYD RRMALSECRV MTYREHTAWV VKASLQKRPD GHIVSVSVNG BACU011600/1-1351 LGDGSIRVYD RRMALSECRV MTYREHTAWV VKAYLQKHPE GHIMSVSVNG ENSBTAP00000003739/1-1335 LGDGSIRVYD RRMALSECRV MTYREHTAWV VKAYLQKHPE GHIMSVSVNG 1251 1300 ENSTTRP00000000521/1-1324 DVRFFDPRMP ESVNVLQIIK GLTALDIHPQ ANLIACGSMN QFTAIYNGSG bmy_02277T0/1-705 GGGVPDARVP HGVCV----- ---------- ---------- ---------- ENSP00000307272/1-1335 DVRIFDPRMP ESVNVLQIVK GLTALDIHPQ ADLIACGSVN QFTAIYNSSG BACU011600/1-1351 DVRFFDPRMP ESVNVLQIIK GLTALDIHPQ ANLIACGSMN QFTAIYNGSG ENSBTAP00000003739/1-1335 DVRFFDPRLP ESVNVMQIVK GLTALDIHPQ ANLIACGSMN QFTAIYNGSG 1301 1350 ENSTTRP00000000521/1-1324 DLINHIKYYD GFMGQRVGAI SCLAFHPHWP HLAVGSNDYY ISVYSVEKRV bmy_02277T0/1-705 ---------- ---GPRTS-- ------PPVP TAA------- ---------- ENSP00000307272/1-1335 ELINNIKYYD GFMGQRVGAI SCLAFHPHWP HLAVGSNDYY ISVYSVEKRV BACU011600/1-1351 ELINHIKYYD GFMGQRVGAI SCLAFHPHWP HLAVGSNDYY ISVYSVEKRV ENSBTAP00000003739/1-1335 ELINHIKYYD GFMGQRVGAI SCLAFHPHWP HLAVGSNDYY ISVYSVEKRV 1351 1400 ENSTTRP00000000521/1-1324 R bmy_02277T0/1-705 - ENSP00000307272/1-1335 R BACU011600/1-1351 R ENSBTAP00000003739/1-1335 R