KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:03 2014 Check: 00 .. Name: ENSTTRP00000014715/1-927 Len: 1000 Check: 4435 Weight: 1.00 Name: bmy_02908T0/1-758 Len: 1000 Check: 7661 Weight: 1.00 Name: BACU013955/1-998 Len: 1000 Check: 127 Weight: 1.00 Name: ENSP00000268876/1-931 Len: 1000 Check: 9346 Weight: 1.00 Name: ENSBTAP00000003766/1-931 Len: 1000 Check: 1703 Weight: 1.00 // 1 50 ENSTTRP00000014715/1-927 --MAEAEAVQ LKEEGNRHFQ RQDYKAAAKS YSQALKLTKD KALLATLYRN bmy_02908T0/1-758 --MAEAEAVQ LKEEGNRHFQ LQDYKAAAKS YSQALKLTKD KALLATLYRN BACU013955/1-998 --MAEAEAVQ LKEEGNRHFQ LQDYKAAAKS YSQALKLTKD KALLATLYRN ENSP00000268876/1-931 --MAEVEAVQ LKEEGNRHFQ LQDYKAATNS YSQALKLTKD KALLATLYRN ENSBTAP00000003766/1-931 PQMAEAEAMQ LKEEGNQHFQ LQDYKAATKS YSQALKLTKD KALLATLYRN 51 100 ENSTTRP00000014715/1-927 RAACGLKTES YVQAASDASR XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02908T0/1-758 RAACGLKTES YAQAASDASR AIDINSSDIK ALYRRSQALE HLGELAQAFK BACU013955/1-998 LAACGLKTES YAQAASDASR AIDINSSDIK ALYRRSQALE HLGELAQAFK ENSP00000268876/1-931 RAACGLKTES YVQAASDASR AIDINSSDIK ALYRRCQALE HLGKLDQAFK ENSBTAP00000003766/1-931 RAACGLKMES YVQAASDASR AIDINSSDIK ALYRRCQALE HLGKLDQAFK 101 150 ENSTTRP00000014715/1-927 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL RVQFSTDSRV QKMFEILLDG bmy_02908T0/1-758 DVQCCATLEP QNPNFQETLR RLNASIQEKL RVQYSTDSRV QNMFEILLDG BACU013955/1-998 DVQCCATLEP QNPNFQETLR RLNASIQEKL RVQYSTDSRV QNMFEILLDG ENSP00000268876/1-931 DVQRCATLEP RNQNFQEMLR RLNTSIQEKL RVQFSTDSRV QKMFEILLDE ENSBTAP00000003766/1-931 DVQRCATLEP QNQSFQETLR RLNTSIQEKL RVQFSTDSRV QTMFEILLDR 151 200 ENSTTRP00000014715/1-927 NSKADKLEKA ANNLIVLSRE EAGAERIFQN NGVALLRQLL DTKRPELMLA bmy_02908T0/1-758 NSEADKLEKV G--------- ---------- ---------- ---------- BACU013955/1-998 NSEADKLEKA ARNLIVLSRE EAGAERIFQN NGVALLLQLL DTKRPELMLA ENSP00000268876/1-931 NSEADKREKA ANNLIVLGRE EAGAEKIFQN NGVALLLQLL DTKKPELVLA ENSBTAP00000003766/1-931 NSEADKLEKA ANNLIVLSRE EAGAERIFQN NGVALLMQLL DTKRPELMLA 201 250 ENSTTRP00000014715/1-927 AVRTLSGMCS GHRARATAIL HAVRIDRICS LMAVENEELP LTVCNLLQAI bmy_02908T0/1-758 -----AGPAA G--------- ---------- ---------A LGTCQV---- BACU013955/1-998 AIRTLSGMCS GHRARATAIL HAVRIDRICS LMAVEDEELP LTVCNLLQAI ENSP00000268876/1-931 AVRTLSGMCS GHQARATVIL HAVRIDRICS LMAVENEEMS LAVCNLLQAI ENSBTAP00000003766/1-931 AVRTLSGVCS SHRARATATL HAVRIDRICS LMAVESEEMS LAVCNLLQGI 251 300 ENSTTRP00000014715/1-927 IDALSGXXXX XXXXXXXXXX XXTKKD-KQI TNH-LDMLVS KKVSGQGRDQ bmy_02908T0/1-758 --------TV LPLQTLLLCL GDTKKDRKQI TNHLLDMLVS KKVSGQGRDQ BACU013955/1-998 IDALSGEDKR EHRGTEEALV LDTKKDRKQI TNHLLDMLVS KKVSGQGRDQ ENSP00000268876/1-931 IDSLSGEDKR EHRGKEEALV LDTKKDLKQI TSHLLDMLVS KKVSGQGRDQ ENSBTAP00000003766/1-931 IDALSGEDKQ EHRGKEEALV LDSKKDLKQI TNHLLDMLVS KKVSGQGRDQ 301 350 ENSTTRP00000014715/1-927 ALNLLNKNVP RKDLAIHDNS RTIYVVDNGL RKILKVVGQV PDLPSCLPLT bmy_02908T0/1-758 ALNLLSKNVP RKDLAIHDNS RTIYVVDNGL RKILKVVGQV PDLPSCLPLT BACU013955/1-998 ALNLLSKNVP RKDLAIHDNS HTIYVVDNGL RKILKVVGQV PDLPSCLPLT ENSP00000268876/1-931 ALNLLNKNVP RKDLAIHDNS RTIYVVDNGL RKILKVVGQV PDLPSCLPLT ENSBTAP00000003766/1-931 ALNLLNKNVP RKDLAIHDNS RTIYVVDNGL RKILKVVGQV PDLPSCLPLT 351 400 ENSTTRP00000014715/1-927 DNTRMLASIL INKLYDDLRC DPERDHFRKI CEEYITGKFD PQDMDKNVIA bmy_02908T0/1-758 DNTRMLASIL INKLYDDLR- ---------- ---------- ---------- BACU013955/1-998 DNTRMLASIL INKLYDDLRC DPERDNFRKI CEEYITGKFD PQDMDKNVIA ENSP00000268876/1-931 DNTRMLASIL INKLYDDLRC DPERDHFRKI CEEYITGKFD PQDMDKNLNA ENSBTAP00000003766/1-931 DNTRMLASIL INKLYDDLRC DPERDHFRKI CEEHITGTFD PQDMDKNVIA 401 450 ENSTTRP00000014715/1-927 IQTVSGILQG PFDLGNQLLG LKGVMEMMVA LCGSEREADQ LVAVEALIHA bmy_02908T0/1-758 -----WILQG PFDLGNQLLG LKGVMEMMVA LCSSERETDQ LVAVEALIHA BACU013955/1-998 IQTVSGILQG PFDLGNQLLG LKGVMEMMVA LCSSERETDQ LVAVEALIHA ENSP00000268876/1-931 IQTVSGILQG PFDLGNQLLG LKGVMEMMVA LCGSERETDQ LVAVEALIHA ENSBTAP00000003766/1-931 IQTVSGILQG PFDLGNQLLG LKGVMEMMVA LCGSERETDQ LVAVEALIHA 451 500 ENSTTRP00000014715/1-927 STKLSRATFI ITNGVSLLKE IYKTTKNEKI KIRTLVGLCK LGSAGGTDYG bmy_02908T0/1-758 STKLSRATFI ITNGV----- ---------- ---------- ---------- BACU013955/1-998 STKLSRATFI ITNGVSLLKN IYKTTQNEKI KIRTLVGLCK LGSAGGTDYG ENSP00000268876/1-931 STKLSRATFI ITNGVSLLKQ IYKTTKNEKI KIRTLVGLCK LGSAGGTDYG ENSBTAP00000003766/1-931 STKLSRATFI ITNGVSLLKE IYKTTKNEKI KIRALVGLCK LGSAGGTDYA 501 550 ENSTTRP00000014715/1-927 LRQFAEGSTE KLAKQCRKWL CNTSTDTRTR RWAAEGLAYL TLDADVKDDF bmy_02908T0/1-758 ---------- --------WL CNTSTDTQTQ RWAVEGLAYL TLDADVKDDF BACU013955/1-998 LRQFAEGSTE KLAKHCRKWL CNTSTDTQTR RWAVEGLAYL TLDADVKDDF ENSP00000268876/1-931 LRQFAEGSTE KLAKQCRKWL CNMSIDTRTR RWAVEGLAYL TLDADVKDDF ENSBTAP00000003766/1-931 LRQFAEGSTE KLAKQCRKWL CNASIDTRTR KWAVEGLAYL TLDADVKDDF 551 600 ENSTTRP00000014715/1-927 VQDIPALQAM LELAK----- ---------- ----TPDKTI LYSVATTLVN bmy_02908T0/1-758 VQDIPALQAM LELAKAS--- ---------- ----TPDKTI LYSVATTLVN BACU013955/1-998 VQDIPALQAM LELAKASVAL ASGLRICWIQ AHGATPDKTI LYSVATTLVN ENSP00000268876/1-931 VQDVPALQAM FELAKAG--- ---------- ----TSDKTI LYSVATTLVN ENSBTAP00000003766/1-931 VQDIPALQAM FELAK----- ---------- ----TPDKTI LYSVATTLVN 601 650 ENSTTRP00000014715/1-927 CTNSYDVNEV IPELVQLAKF SKQHVPEEHP K--------- ---------- bmy_02908T0/1-758 CTNSYDVKEV IPELVQLAKF SKQHVPEEHP K--------- ---------- BACU013955/1-998 CTNSYDVKEV IPELVQLAKF SKQHVPEEHP KVGKGMTGSE GGKLYYRTAR ENSP00000268876/1-931 CTNSYDVKEV IPELVQLAKF SKQHVPEEHP K--------- ---------- ENSBTAP00000003766/1-931 CTNSYDVKEV IPELVQLAKF SKQHVPEEHP K--------- ---------- 651 700 ENSTTRP00000014715/1-927 ---------- ---------- ---------- -DKKDFVDMR VKRLLKAGVI bmy_02908T0/1-758 ---------- ---------- ---------- -DKKDFVDKR VNRLLKAGVI BACU013955/1-998 EVGRTVSDVQ APCLCVWEDL VEDAEELKRI TDKKDFVDKR VNRLLKAGVI ENSP00000268876/1-931 ---------- ---------- ---------- -DKKDFIDMR VKRLLKAGVI ENSBTAP00000003766/1-931 ---------- ---------- ---------- -DKKDFVDMR VKRLLKAGVT 701 750 ENSTTRP00000014715/1-927 SVLACMVKAD NAILTDQTKE LLARVFLALC DNPKDRGTIV AQGGGKALIP bmy_02908T0/1-758 SALACMVKAD NAILTDQTKE LLARVFLALC DNPKDRGTIV AQGGGKALIP BACU013955/1-998 SALACMVKAD NAILTDQTKE LLARVFLALC DNPKDRGTIV AQGGGKALIP ENSP00000268876/1-931 SALACMVKAD SAILTDQTKE LLARVFLALC DNPKDRGTIV AQGGGKALIP ENSBTAP00000003766/1-931 SALVCMVKAD NAILTDQTKE LLARVFLALC DNPKDRGTIV AQGGGKALIP 751 800 ENSTTRP00000014715/1-927 LALEGTDVGK VKAAHALAKI AAVSNPDIAF PGERVYEVVR PLVSLLNTQR bmy_02908T0/1-758 LALEGTDVGK VKAAHALAKI AAVSNPDIAF PGERVYEVVR PLVRLLDTQR BACU013955/1-998 LALEGTDVGK VKAAHALAKI AAVSNPDIAF PGERVYEVVR PLVRLLDTQR ENSP00000268876/1-931 LALEGTDVGK VKAAHALAKI AAVSNPDIAF PGERVYEVVR PLVRLLDTQR ENSBTAP00000003766/1-931 LALEGTDVGK VKAAHALAKI AAVSNPDIAF PGERVYEVVR PLVSLLNTQR 801 850 ENSTTRP00000014715/1-927 DGLQNYEALL GLTNLSERSD KLRQKIFKEK ALPDIENYMF ENHDQLRQAA bmy_02908T0/1-758 DGLQNYEALL GLTNLSARSD KLRQKIFKEK ALPDIENYMF ENHDQLRQAA BACU013955/1-998 DGLQNYEALL GLTNLSAQSD KLRQKIFKEK ALPDIENYMF ENHDQLRQAA ENSP00000268876/1-931 DGLQNYEALL GLTNLSGRSD KLRQKIFKER ALPDIENYMF ENHDQLRQAA ENSBTAP00000003766/1-931 DGLQNYEALL GLTNLSGRSD KLRKKIFKEK ALPDIENYMF ENHDQLRQAA 851 900 ENSTTRP00000014715/1-927 TECMCNMVVN KEVQERFLAD GNDRLKLVVL LCGEDDDKVQ NAAAGALAML bmy_02908T0/1-758 TECMCNMVVS KEVQERFLAD GNDRLKLVVL LCGEDDDKLQ NAAAGALAML BACU013955/1-998 TECMCNMVVS KEVQERFLAD GNDRLKLVVL LCGEDDDKLQ NAAAGALAML ENSP00000268876/1-931 TECMCNMVLH KEVQERFLAD GNDRLKLVVL LCGEDDDKVQ NAAAGALAML ENSBTAP00000003766/1-931 TECMCNMVVN KEVQERFLAD GNDRLKLVVL LCGEDDDKLQ NAAAGALAML 901 950 ENSTTRP00000014715/1-927 TAAHKKLCFK MTQVTTQWLE ILQRLCLHDR LSVQHRGLVI AYNLLAADAE bmy_02908T0/1-758 TAAHKKLCFK MTQVTTQWLE ILQRLCLHDR LSVQHRGLVI AYNLVAADAE BACU013955/1-998 TAAHKKLCFK MTQVTTQWLE ILQRLCLHDR LSVQHRGLVI AYNLVAADAE ENSP00000268876/1-931 TAAHKKLCLK MTQVTTQWLE ILQRLCLHDQ LSVQHRGLVI AYNLLAADAE ENSBTAP00000003766/1-931 TAAHKKLCFK MTEVTTQWLE ILQRLCLHDR LSVQHRGLVI AYNLLAADAE 951 1000 ENSTTRP00000014715/1-927 LAKKLVESEL LEILTVVGKQ EPDEKRAAVV QTARECLIKC MDYGFIKPVS bmy_02908T0/1-758 LAKKLVESEL MEILTVVGKQ EPDEKRAAVV QTARECLIKC IDYGFIKPVS BACU013955/1-998 LAKKLVESEL MEILTVVGKQ EPDEKRAAVV QTARECLIKC IDYGFIKPVS ENSP00000268876/1-931 LAKKLVESEL LEILTVVGKQ EPDEKKAEVV QTARECLIKC MDYGFIKPVS ENSBTAP00000003766/1-931 LAKKLVESEL LEILTVVGKQ EPDEKRAAVV QTARECLIKC MDYGFIKPVA