KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:04 2014 Check: 00 .. Name: ENSP00000409126/1-931 Len: 932 Check: 7319 Weight: 1.00 Name: ENSBTAP00000003770/1-860 Len: 932 Check: 2586 Weight: 1.00 Name: ENSTTRP00000001791/1-907 Len: 932 Check: 2385 Weight: 1.00 Name: bmy_21657T0/1-815 Len: 932 Check: 1018 Weight: 1.00 Name: BACU007949/1-897 Len: 932 Check: 8909 Weight: 1.00 // 1 50 ENSP00000409126/1-931 MKKMSRNVLL QMEEEEDDDD GDIGDVPASR RPFLTPHTHL PSSLVLENLG ENSBTAP00000003770/1-860 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001791/1-907 MQMMTRDGLL EMELEEDDDD GDI------- ---------- ----VLENLE bmy_21657T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU007949/1-897 ---------- ---------- ---------- ----MAPATL PSSLVLENLE 51 100 ENSP00000409126/1-931 QTIVPDLGSL ESQHDFRTPE FEEFNGKPDS LFFNDGQRRI DFVLVYEDES ENSBTAP00000003770/1-860 ---------- ---------- -EEFNGKPDS LYFNDGQRRI DFVLVYEDES ENSTTRP00000001791/1-907 QTIVSGFGSL ESQQDFRTPE FEEFNGKLDS LFFNDGQRRI DFVLVYEDES bmy_21657T0/1-815 ----MGDGRL A---EWTATC WEQ-NGKAAP --------PA PLALISLGFS BACU007949/1-897 QTIVSRFGSL ESQQDFRTPE FEEFNGKSDS LFFNDGQRRI DFVLVYEDES 101 150 ENSP00000409126/1-931 RKETNKKGTN EKQRRKRQAY ESNLICHGLQ LEATRSVLDD KLVFVKVHAP ENSBTAP00000003770/1-860 RKETNKKGSN EKQRRKRQAY ESNLICDGLQ LEATRSLVDD KLVFVKVHAP ENSTTRP00000001791/1-907 RKETNKKGSN EKQRRKRRAY ESNLICDGLQ LEATRSLLDD KLVFVKVHAP bmy_21657T0/1-815 RQ-------- ----RKRRAY ESNLICDGLQ LEATRSLLDD KLVFVKVHAP BACU007949/1-897 RKETNKKGSN EKQRRKRRAY ESNLICDGLQ LEATRSILDD KLVFVKVHAP 151 200 ENSP00000409126/1-931 WEVLCTYAEI MHIKLPLKPN DLKNRSSAFG TLNWFTKVLS VDESIIKPEQ ENSBTAP00000003770/1-860 WEVLCTYAEI MHIKLPLKPN DLKTRSSAFD NFNWFTKLLQ VDESIIKPEQ ENSTTRP00000001791/1-907 WEVLCTYAEI MHIKLPLKPN DLKTRSSAFD NFNWFTKVLQ VDESIIKPEQ bmy_21657T0/1-815 WEVLCTYAEI MHIKLPLKPN DLKTRSSAFD NFNWFTKVLQ VDESIIKPEQ BACU007949/1-897 WEVLCTYAEI MHIKLPLKPN DLKTRSSAFD NFNWFTKVLQ VDESIIKPEQ 201 250 ENSP00000409126/1-931 EFFTAPFEKN RMNDFYIVDR DAFFNPATRS RIVYFILSRV KYQVINNVSK ENSBTAP00000003770/1-860 EFFTAPFEKN RMNDFYIQDR DTFFNPATRS RIVYFILSRI MYQVRDNVKK ENSTTRP00000001791/1-907 EFFTAPFEKN RMNDFYIQDR DTFFNPATRS RIVHFILSRI KYQVRDNVKK bmy_21657T0/1-815 EFFTAPFEKN RMNDFYIQDR DTFFNPATRS RIVYFILSRI KYQVRDNVKK BACU007949/1-897 EFFTAPFEKN RMNDFYIQDR DTFFNPATRS RIVYFILSRI KYQVRDNVKK 251 300 ENSP00000409126/1-931 FGINRLVNSG IYKAAFPLHD CKFRRQSEDP SCPNERYLLY REWAHPRSIY ENSBTAP00000003770/1-860 FGINKLVNSG IYKAAFPLHD CNFSTPSEDL SCPNERYLLY REWAHPRSIY ENSTTRP00000001791/1-907 FGINKLVSSG IYKAAFPLHD CNFSSPSEDL SCPNERYLLY REWAHPRSMY bmy_21657T0/1-815 FGINRLVSSG IYKAAFPLHD CNFSSPSEDL SCPNERYLL- ---------- BACU007949/1-897 FGINKLVSSG IYKAAFPLHD CNFSSPSEDL SCPNERYLLY REWAHPRSIY 301 350 ENSP00000409126/1-931 KKQPLDLIRK YYGEKIGIYF AWLGYYTQML LLAAVVGVAC FLYGYLNQDN ENSBTAP00000003770/1-860 KKQPLDLIRK YYGEKIGIYF AWLGYYTQML LLAAIVGVAC FLYGYFTEDN ENSTTRP00000001791/1-907 KKQPLDLIRK YYGEKIGIYF AWLGYYTQML LLAAVVGVAC FLYGYFNQNN bmy_21657T0/1-815 ---------K YYGEKIGIYF AWLGYYTQML LLAAVVGVAC FLYGYFNQNN BACU007949/1-897 KKQPLDLIRK YYGEKIGIYF AWLGYYTQML LLAAVVGVAC FLYGYFNQNN 351 400 ENSP00000409126/1-931 CTWSKEVCHP DIGGKIIMCP QCDRLCPFWK LNITCESSKK LCIFDSFGTL ENSBTAP00000003770/1-860 CTWSKEVCDP NIGGQIIMCP QCDNECPFWS LNVTCESSKK LCIFDSFGTL ENSTTRP00000001791/1-907 CTWSKEVCDP DIGGKIIMCP QCDKLCPFWK LNVTCESSKK LCLFDSFGTL bmy_21657T0/1-815 CTWSKEVCDP DIGGKIIMCP QCDKLCPFWK LNITCESSKK LCLFDSFGTL BACU007949/1-897 CTWSKEVCDP DIGGKIIMCP QCDKLCPFWK LNITCESSKK LCLFDSFGTL 401 450 ENSP00000409126/1-931 VFAVFMGVWV TLFLEFWKRR QAELEYEWDT VELQQEEQAR PEYEARCTHV ENSBTAP00000003770/1-860 VFAVFMGVWV TLFLEFWKRR QAELEYEWDT VELQQEEQAR PEYEARCTHV ENSTTRP00000001791/1-907 VFAVFMGVWV TLFLEFWKRR QAELEYEWDT VELQQEEQAR PEYEARCTHV bmy_21657T0/1-815 VFAVFMGVWV TLFLEFWKRR QAELEYEWDT VELQQEEQPR PEYEARCTHV BACU007949/1-897 VFAVFMGVWV TLFLEFWKRR QAELEYEWDT VELQQEEQPR PEYEARCTHV 451 500 ENSP00000409126/1-931 VINEITQEEE RIPFTAWGKC IRITLCASAV FFWILLIIAS VIGIIVYRLS ENSBTAP00000003770/1-860 VINEITQEEE RVPFTTWGKC IRVTLCASAV FFWILLIIAS VIGIIVYRLS ENSTTRP00000001791/1-907 VINEITQEEE RIPFTTWGKC IRITLCASAV FFWILLIIAS VIGIIVYRLS bmy_21657T0/1-815 -------EEE RIPFTTWGKC IRITLCASAV LFWILLIIAS VIGIIVYRLS BACU007949/1-897 VINEITQEEE RIPFTTWGKC IRITLCASAV FFWILLIVAS VIGIIVYRLS 501 550 ENSP00000409126/1-931 VFIVFSAKLP KNINGTDPIQ KYLTPQTATS ITASIISFII IMILNTIYEK ENSBTAP00000003770/1-860 VFVIFSVNLR KISNGTDPIQ KYVTPQMATS ITASLISFII IMILNTIYEK ENSTTRP00000001791/1-907 VFIVFSAKLP KNLNGTDPIQ KYLTPQMATS ITASLISFII IMILNIIYEK bmy_21657T0/1-815 VFIVFSAKLP KNLNGTDPIQ KYLTPQMATS ITASLISFII IMILNTIYEK BACU007949/1-897 VFIVFSAKLP KNLNGTDPIQ KYLTPQMATS ITASLISFII IMILNTIYEK 551 600 ENSP00000409126/1-931 VAIMITNFEL PRTQTDYENS LTMKMFLFQF VNYYSSCFYI AFFKGKFVGY ENSBTAP00000003770/1-860 VAIMITNFEL PRTQTDYENS LTMKMFLFQF VNYYSSCFYI AFFKGKFVGY ENSTTRP00000001791/1-907 VAIMITNFXX XXXXXXXXXX XXXXXXXXXX XXXXXXCFYI AFFKGKFVGY bmy_21657T0/1-815 VAIMITNFEL PRTQTDYENS LTMKMFLFQF VNYYSSCFYI AFFKGKFVGY BACU007949/1-897 VAIMITNFEL PRTQTDYENS LTMKMFLFQF VNYYSSCFYI AFFKGKFVGY 601 650 ENSP00000409126/1-931 PGDPVYWLGK YRNEECDPGG CLLELTTQLT IIMGGKAIWN NIQEVLLPWI ENSBTAP00000003770/1-860 PGDPVYWLGK YRNEECDPGG CLLELTTQLI IIMGGKAIWN NIQEVLLPWV ENSTTRP00000001791/1-907 PGDPVYWLGK YRNEECEPGG CLLELTTQLI IIMGGKAIWN NIQEVLLPWV bmy_21657T0/1-815 PGDPVYWLGK YRNEECDPGG CLFELTTQLI IIMGGKAIWN NIQEVLLPWV BACU007949/1-897 PGDPVYWLGK YRNEECDPGG CLLELTTQLI IIMGGKAIWN NIQEVLLPWV 651 700 ENSP00000409126/1-931 MNLIGRFHRV SGSEKITPRW EQDYHLQPMG KLGLFYEYLE MIIQFGFVTL ENSBTAP00000003770/1-860 MNVFGRCRTV SGAEKRTPRW EQDYHLQPMG KLGLFYEYLE MIIQFGFVTL ENSTTRP00000001791/1-907 MNLIGRCRTV SGAEKKAPRW EQDYHLQPMG KLGLFYEYLE MIIQFGFVTL bmy_21657T0/1-815 MNLIGRCRTV SGTEKKTPRW EQDYHLQPMG KLGLFYEYLE MIIQFGFVTL BACU007949/1-897 MNLIGRCRTV SGAEKKTPRW EQDYHLQPMG KLGLFYEYLE MIIQFGFVTL 701 750 ENSP00000409126/1-931 FVASFPLAPL LALVNNILEI RVDAWKLTTQ FRRLVPEKAQ DIGAWQPIMQ ENSBTAP00000003770/1-860 FVASFPLAPL LALVNNILEI RVDAWKLTTQ YRRMVPEKAQ DIGAWQPIMQ ENSTTRP00000001791/1-907 FVASFPLAPL LALVNNILEI RVDAWKLTTQ YRRMVPEKAQ DIGAWQPIMQ bmy_21657T0/1-815 FVASFPLAPL LALVNNILEI RVDAWKLTTQ YRRMVPEKAQ DIGAWQPIMQ BACU007949/1-897 FVASFPLAPL LALVNNILEI RVDAWKLTTQ YRRMMPEKAQ DIGAWQPIMQ 751 800 ENSP00000409126/1-931 GIAILAVVTN AMIIAFTSDM IPRLVYYWSF SVPPYGDHTS YTMEGYINNT ENSBTAP00000003770/1-860 GIAILAVVTN AMIIAFTSDM IPRLVYYWSF SIPPYGDHPD YSMEGYINIS ENSTTRP00000001791/1-907 GIAILAVVTN ---IAFTSDM IPRLVYYWSF SVPPYGDHPH YTMQGYINNT bmy_21657T0/1-815 GIAILAVVTN AMIVAFTSDM IPRLVYYWSF SVPPYGDHPH YTMEGYINNT BACU007949/1-897 GIAIMAVVTN AMIIAFTSDM IPRLVYYWSF SVPPYGDHPH YTMEGYINNT 801 850 ENSP00000409126/1-931 LSIFKVADFK NKSKGNPYSD LGNHTTCRYR DFRYPPGHPQ EYKHNIYYWH ENSBTAP00000003770/1-860 LSIFNTADFK SRVKENPYAG -SKYDTCRYR DFRYPPGHPQ EYKHNIYYWH ENSTTRP00000001791/1-907 LSYFNVADFK SKSKENPYTE LGDYTTCRYR DFRYPPGHPQ EYKHNIYYWH bmy_21657T0/1-815 LSYFNVADFK SKSKENP--- --------YR DFRYPPGHPQ EYKHNIYYWH BACU007949/1-897 LSYFNIADFK SKSKENPYTE LGDYTTCRYR DFRYPPGHPQ EYKHNIYYWH 851 900 ENSP00000409126/1-931 VIAAKLAFII VMEHVIYSVK FFISYAIPDV SKRTKSKIQR EKYLTQKLLH ENSBTAP00000003770/1-860 VIAAKLAFII VMEHIIYSVK FFISYTIPDV SKSTKSKIKR EKYLTQKLLH ENSTTRP00000001791/1-907 VIAAKLAFII VMEHIIYSVK FFISYAIPDV SKSTKSKIRR EKYLTQKLLH bmy_21657T0/1-815 VIAAKLAFII VMEHIIYSVK FFISYTIPDI SKSTKSKIRR EKYLTQKLLH BACU007949/1-897 VIAAKLAFII VMEHIIYSVK FFISYTIPDV SKSTKSKIRR EKYLTQKLLH 901 950 ENSP00000409126/1-931 ENHLKDMTKN MGVIAERMI- EAVDNNLRPK SE ENSBTAP00000003770/1-860 ENHLKDMTKN IGVIAEKMIG AVVDNNLRPK SD ENSTTRP00000001791/1-907 ENHLKDMTKN MGVIAERMI- AVVDNNIRPK SD bmy_21657T0/1-815 ENHLKDMTKN MGVIAERMI- AVVDNNLRPK SD BACU007949/1-897 ENHLKDMTKN MGVIAERMI- AVVDNNLRLK SD