KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:06 2014 Check: 00 .. Name: ENSTTRP00000012704/1-509 Len: 518 Check: 7948 Weight: 1.00 Name: ENSP00000244565/1-518 Len: 518 Check: 3644 Weight: 1.00 Name: ENSBTAP00000003791/1-518 Len: 518 Check: 6108 Weight: 1.00 Name: bmy_11325T0/1-501 Len: 518 Check: 2289 Weight: 1.00 Name: BACU018001/1-443 Len: 518 Check: 4721 Weight: 1.00 // 1 50 ENSTTRP00000012704/1-509 MCSYEGSFQL AQFLLLVGVP VASAVLLAQC LQWRCPRRLL GACWKLESQE ENSP00000244565/1-518 MCPQESSFQP SQFLLLVGVP VASVLLLAQC LRWHCPRRLL GACWTLNGQE ENSBTAP00000003791/1-518 MCSYESSFQP AQFLLLVGVP LASAVLLVQC LRWRCPRRLL GSCWKLESQE bmy_11325T0/1-501 MCSHESSFQP AQFLLLVGVP VASAVLLAQC LQWRCPRRLL GTCWKLESQE BACU018001/1-443 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012704/1-509 EPASHPTPLP ESESSGEAPP ASLQEMAAFY QELHTPTKGQ TVIRQLMHKL ENSP00000244565/1-518 EPVSQPTPQL ENEVSRQHLP ATLPEMVAFY QELHTPTQGQ TMVRQLMHKL ENSBTAP00000003791/1-518 EPAPPPTPLP EDESSRAGLP ATLQEVATFY QELHTPTQGQ TVIRQLMHKL bmy_11325T0/1-501 EPASHPTPLP ESESSAEGPP ASLQEMAAFY QELHTPTQGQ TVIRQLMHKL BACU018001/1-443 ---------- ---------- -----MAAFY QELHTPTQGQ TVIRQLMHKL 101 150 ENSTTRP00000012704/1-509 LVFSAREVDH RGGCLILQDT GISLLIPPGA VSVGRQERVA LILVWDLSDA ENSP00000244565/1-518 LVFSAREVDH RGGCLMLQDT GISLLIPPGA VAVGRQERVS LILVWDLSDA ENSBTAP00000003791/1-518 LVFSAREVDH RGGCLMLQDT GISLLIPPGA VSMGRQERVS LTLVWDLTDA bmy_11325T0/1-501 LVFSAREVDH R--------- --------GA VSVGRQERVA LILVWDLSDA BACU018001/1-443 LVFSAREVDH RGGCLMLQDT GISLLIPPGA VSVGRQERVA LILVWDLSDA 151 200 ENSTTRP00000012704/1-509 PSLSRAQGLV SPVVACGPHG ASFLKPCTLT FKHCAQQPSQ ARTYSSNTTL ENSP00000244565/1-518 PSLSQAQGLV SPVVACGPHG ASFLKPCTLT FKHCAEQPSH ARTYSSNTTL ENSBTAP00000003791/1-518 PSLSRAQGLV SPVVACGPHG ASFLKPCTLT FKHCAQQPSQ ARAYSSNTAL bmy_11325T0/1-501 PSLSRAQGLV SPVVACGPHG ASFLKPCTLT FKHCAQQPSQ ARTYSSNTTL BACU018001/1-443 PSLSRAQGLV SPVVACGPHG ASFLKPCTLT FKHCAQQPSQ ACTYSSNTTL 201 250 ENSTTRP00000012704/1-509 LDAKAWKPLG RPGDHISRDE CRIHLSHFXX XXXXXXXXXX REARKWLQLA ENSP00000244565/1-518 LDAKVWRPLG RPGAHASRDE CRIHLSHFSL YTCVLEAPVG REARKWLQLA ENSBTAP00000003791/1-518 LDTKAWKPLG RPGDHTSRDE CRIHLSHFSL YTCVLEAPVG REARKWLQLA bmy_11325T0/1-501 LDAKAWKPLG QPGDHTSRDE CRIHLSHFSL YTCVLEAAVS REARKWLQLA BACU018001/1-443 LDAKAWKPLG RPGDHTSRDE CRIHLSHFSL YTCVLEAAVS REARKWLQLA 251 300 ENSTTRP00000012704/1-509 VLCSRLPAGQ SH-QLRVYFL NNTPCALRWV I-NEQPHGGR LRGPCQLFDF ENSP00000244565/1-518 VFCSPLVPGQ SHLQLRIYFL NNTPCALQWA LTNEQPHGGR LRGPCQLFDF ENSBTAP00000003791/1-518 LFCSPLAPGQ SHLQLRVYFL NNTPCALQWA VTNEQPHGGR LRGPCQLFDF bmy_11325T0/1-501 VFCSPLAPGQ SHLQLRVYFL NNTPCALRWA VTNEQPHGGR LRGPCQLFDF BACU018001/1-443 VFCSPLAPGQ SHLQLRVYFL NNTPCALRWA VTNEQPHGGR LRGPCQLFDF 301 350 ENSTTRP00000012704/1-509 TGARGDQCLK LKYISE---- --DSACXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000244565/1-518 NGARGDQCLK LTYISEGWEN VDDSSCQLVP HLHIWHGKCP FRSFCFRRKA ENSBTAP00000003791/1-518 TGARGDQCLK LKYISEGWEN VDDSSCQLVP HLHIWHGKCP FRSFCFRRKA bmy_11325T0/1-501 TGARGDQCLK LKYISEGWEN VDDSSCQLVP HLHIWHGKCP FRSFCFRRKA BACU018001/1-443 TGARGDQCLK LKYISEGWEN VDDSSCQLVP HLHIWHGKCP FRSFCFRRKA 351 400 ENSTTRP00000012704/1-509 XNENKDCSAL TNEIIVTMHT FQDGLETKYM EILRFQASEE ESWTAPPAVT ENSP00000244565/1-518 ADENEDCSAL TNEIIVTMHT FQDGLETKYM EILRFQASEE ESWAAPPPVS ENSBTAP00000003791/1-518 AKDNEDCSAL TNEIIVTMHT FQDGLETKYM EILRFQASEE ESWTAPPPVT bmy_11325T0/1-501 ANENEDCSAL TNEIIVTMHT FQDGLETKYM EILRFQASEE ESWTAPPPVT BACU018001/1-443 ANENEDCSAL TNEIIVTMHT FQDGLETKYM EILRFQASEE ESWSAPPPVT 401 450 ENSTTRP00000012704/1-509 QPPPCNRLPP ELFERLQMLL EPNSITGNDW RRLASHLGLC GMKIRFLSCQ ENSP00000244565/1-518 QPPPCNRLPP ELFEQLRMLL EPNSITGNDW RRLASHLGLC GMKIRFLSCQ ENSBTAP00000003791/1-518 QPPACNRLPP ELFEQLQMLL EPNSITGNDW RRLASHLGLC GMKIRFMSCQ bmy_11325T0/1-501 QPPPCNRLPP ELFERLQMLL EPNSITGNDW RRLASHLGLC GMKIRFLSCQ BACU018001/1-443 QPPPCNRLPP ELFERLQMLL EPNSITGNDW RRLASHLGLC GMKIRFLSCQ 451 500 ENSTTRP00000012704/1-509 RSPAAAILEL FEEQNGSLQE LHYLMTTMER LDCASVIQNY LKGTQSGSPP ENSP00000244565/1-518 RSPAAAILEL FEEQNGSLQE LHYLMTVMER LDCASAIQNY LSGTHGGSPG ENSBTAP00000003791/1-518 RSPAAAILEL FEEQNGSLQE LHYLMTLMER LDCASVIQNY LNGTQSGSPP bmy_11325T0/1-501 RSPAAAILEL FEEQNGSLQE LHYLMTIMER LDCASVIQNY LKGTQSDSPA BACU018001/1-443 RSPAAAILEL FEEQNGSLQE LHYLMTIMER LDCASVIQNY LKGTQSDSPA 501 550 ENSTTRP00000012704/1-509 G-CWVAQENQ GLELDEKL ENSP00000244565/1-518 PERGGARDNQ GLELDEKL ENSBTAP00000003791/1-518 RLRAGAQENQ GLELDEKL bmy_11325T0/1-501 RVCWVAQENQ GLELDEKL BACU018001/1-443 RVCWVAQENQ GLELDEKL