KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:08 2014 Check: 00 .. Name: ENSTTRP00000000344/1-292 Len: 399 Check: 1464 Weight: 1.00 Name: bmy_10648T0/1-232 Len: 399 Check: 5297 Weight: 1.00 Name: ENSP00000340609/1-220 Len: 399 Check: 4991 Weight: 1.00 Name: BACU001316/1-386 Len: 399 Check: 3945 Weight: 1.00 Name: ENSBTAP00000003800/1-219 Len: 399 Check: 287 Weight: 1.00 // 1 50 ENSTTRP00000000344/1-292 ---------- ---------- ---------- ---------- ---------- bmy_10648T0/1-232 ---------- ---------- ---------- ---------- ---------- ENSP00000340609/1-220 ---------- ---------- ---------- ---------- ---------- BACU001316/1-386 MSDSSTTDVA LPAASKLPGE PQKPPRHPHN GLQERGTTQA GRRRARDKRV ENSBTAP00000003800/1-219 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000344/1-292 ---TGLCHFA TLALALLVLL EALAQVGTQK MVRDQCGVCP RACNSMRXXX bmy_10648T0/1-232 ---------- ---------- ---------- ---------- ---------- ENSP00000340609/1-220 ---------- ---------- ---------- ---------- ---------- BACU001316/1-386 GSRYRTPEVK DFRSHWQIIL RADATGLFSD WAAHKVSVSR SDPKNRLLDA ENSBTAP00000003800/1-219 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000344/1-292 XXXXXXXXXX XXXXXKQHQA CRDRRLEAGS ---------- ---------- bmy_10648T0/1-232 ------MACT DAYLHVPPPL CESTHLWEMD F--------- ---------- ENSP00000340609/1-220 ---------- ---------- ---------- ---------- ---------- BACU001316/1-386 SRGGWVCGCH TSHGPAPPDL ARTRCAQSLT SSANTRSNLQ TQLSSLERLF ENSBTAP00000003800/1-219 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000344/1-292 ---------- -----KKCPS EKTSAWARYP HRMDSLKKQD LRRPKIHGAV bmy_10648T0/1-232 ---------- -----RTGAE VALKVKKIKQ -------RST KRHPPT--PP ENSP00000340609/1-220 ---------- -----MTSGE VKTSLKNAYS -------SAK RLSPKMEEEG BACU001316/1-386 QTPAAERKEN PLAPKMTSRE PKTSLKNAYP -------SAK KLLPKVEEEG ENSBTAP00000003800/1-219 ---------- -----MTSGE SKTGLKNVYP -------SAK KLLPKVE-EG 201 250 ENSTTRP00000000344/1-292 RVPPYQPPTL ASLQ-----R LLWVRRAAVL SHINEVWPNL FLGDAYAARD bmy_10648T0/1-232 NSQPYFGSRN REQKPVGCPR LSP-RSRPRL RAADQ---PL SLAPRATALD ENSP00000340609/1-220 EEEDYCTPGA FELE-----R LFW-KGSPQY THVNEVWPKL YIGDEATALD BACU001316/1-386 EAEDYWTPGA FELE-----R LFW-KGGPQY THVNEVWPKL YIGDEATALD ENSBTAP00000003800/1-219 EAEDYCTPGA FELE-----R LFW-KGSPQY THVNEVWPKL YIGDETTALD 251 300 ENSTTRP00000000344/1-292 KNKLTQLGIT HIVNVAAGKF QVDTGANFYR GMPLEYYGIE ADDNPFFDLS bmy_10648T0/1-232 RYRLQKAGFT HVLNAAHGSW NVDTGPDYYR DMAIEYHGVE ADDLPTFDLS ENSP00000340609/1-220 RYRLQKAGFT HVLNAAHGRW NVDTGPDYYR DMDIQYHGVE ADDLPTFDLS BACU001316/1-386 RYRLQKAGFT HVLNAAHGSW NVDTGPDYYR DMAIEYHGVE ADDLPTFDLS ENSBTAP00000003800/1-219 RYGLQKAGFT HVLNAAHGRW NVDTGPDYYR DMAIEYHGVE ADDLPSFDLS 301 350 ENSTTRP00000000344/1-292 VYFLPVARYI QSALIIPQGR VLVHCAMGVS RSATVVLAFL MICENMTLVE bmy_10648T0/1-232 VFFYPAAAFI DAALRYNH-- ---------- --TTLVLAYL MIHRNMTLVD ENSP00000340609/1-220 VFFYPAAAFI DRALSDDHSK ILVHCVMGRS RSATLVLAYL MIHKDMTLVD BACU001316/1-386 VFFYPAAAFI DAALRYDHNK ILVHCAMGRS RSATLVLAYL MIHRNMTLVD ENSBTAP00000003800/1-219 VFFYPAAAFI DAALRYDHNK ILVHCVMGRS RSATLVLAYL MIHRNMTLVD 351 400 ENSTTRP00000000344/1-292 AIQTVQAHRD ICPNSGFLRQ LQVLDNRLGQ ETGRL----- --------- bmy_10648T0/1-232 AIQQVAKNRC VLPNRGFLKQ LRELDKQLVQ QRRQARHGGD GEKAGEKEL ENSP00000340609/1-220 AIQQVAKNRC VLPNRGFLKQ LRELDKQLVQ QRRRSQR-QD GEEEDGREL BACU001316/1-386 AIQQVAKNRC VLPNRGFLKQ LRELDQQLVQ QRRQARHGGD GEKAGEEEL ENSBTAP00000003800/1-219 AIQQVAKNRC VLPNRGFLKQ LRELDRQLVQ QRRQAQQGED AEKCEQEP-