KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:08 2014 Check: 00 .. Name: ENSTTRP00000001739/1-451 Len: 526 Check: 9905 Weight: 1.00 Name: ENSP00000370343/1-451 Len: 526 Check: 9578 Weight: 1.00 Name: ENSBTAP00000003812/1-454 Len: 526 Check: 913 Weight: 1.00 Name: bmy_04313T0/1-466 Len: 526 Check: 3995 Weight: 1.00 Name: BACU005093/1-508 Len: 526 Check: 5901 Weight: 1.00 // 1 50 ENSTTRP00000001739/1-451 MNLEGSSRGG EFGMSSVSCG NGKLRQWLID QIDSGKYPGL VWENEEKSIF ENSP00000370343/1-451 MNLEGGGRGG EFGMSAVSCG NGKLRQWLID QIDSGKYPGL VWENEEKSIF ENSBTAP00000003812/1-454 MNLEGGSRGG EFGMSSVSCG NGKLRQWLID QIDSGKYPGL VWENEEKSIF bmy_04313T0/1-466 MNLEGGSRGG EFGMSSVSCG NGKLRQWLID QIDSGKYPGL VWENEEKSIF BACU005093/1-508 MNLEGGSRGG EFGMSSVSCG NGKLRQWLID QIDSGKYPGL VWENEEKSIF 51 100 ENSTTRP00000001739/1-451 RIPWKHAGKQ DYNREEDAAL FKAWALFKGK FREGIDKPDP PTWKTRLRCA ENSP00000370343/1-451 RIPWKHAGKQ DYNREEDAAL FKAWALFKGK FREGIDKPDP PTWKTRLRCA ENSBTAP00000003812/1-454 RIPWKHAGKQ DYNREEDAAL FKAWALFKGK FREGIDKPDP PTWKTRLRCA bmy_04313T0/1-466 RIPWKHAGKQ DYNREEDAAL FKAWALFKGK FREGIDKPDP PTWKTRLRCA BACU005093/1-508 RIPWKHAGKQ DYNREEDAAL FKAWALFKGK FREGIDKPDP PTWKTRLRCA 101 150 ENSTTRP00000001739/1-451 LNKSNDFEEL VERSQLDISE PYKVYRIVPE GAKKXXXXXX XXXXXXXXXX ENSP00000370343/1-451 LNKSNDFEEL VERSQLDISD PYKVYRIVPE GAKKGAKQLT LEDPQMSMSH ENSBTAP00000003812/1-454 LNKSNDFEEL VERSQLDISD PYKVYRIVPE GAKKGAKQLT LEDPQMPMSH bmy_04313T0/1-466 LNKSNDFEEL VERSQLDISD PYKVYRIVPE GAKKGAKQLT LEDPQMPMSH BACU005093/1-508 LNKSNDFEEL VERSQLDISD PYKVYRIVPE GAKKGAKQLT LEDPQMPMSH 151 200 ENSTTRP00000001739/1-451 XXXXXXXXXX XXXXQAHTYM IPPHDRGWRE FVPDQPHPET PYQCPVTFGP ENSP00000370343/1-451 PYTMTTPYPS LPAQQVHNYM MPPLDRSWRD YVPDQPHPEI PYQCPMTFGP ENSBTAP00000003812/1-454 PYSMPTPYPS LPAQQVHNYM IPPHDRGWRE FVPDQPHAEI PYQCPVTFGP bmy_04313T0/1-466 PYSMPAPYSS LPAQQAHTYM IPPHDRGWRE FVPDQPHPET PYQCPVTFGP BACU005093/1-508 PYSMPAPYSS LPAQQAHTYM IPPHDRGWRE FVPDQPHPET PYQCPVTFGP 201 250 ENSTTRP00000001739/1-451 RSHHWQGPAC EN---GCQVT GTFYACAPPE SQAPGIPIEP SIRSAEALAL ENSP00000370343/1-451 RGHHWQGPAC EN---GCQVT GTFYACAPPE SQAPGVPTEP SIRSAEALAF ENSBTAP00000003812/1-454 RGHHWQGPAC ENANAGCQVT GTFYACAPPE SQAPGIPIEP SIRSAEALAL bmy_04313T0/1-466 RSHHWQGPAC EN---GCQVT GTFYACAPPE SQAPGIPIEP SIRSAEALAL BACU005093/1-508 RSHHWQGPAC EN---GCQVT GTFYACAPPE SQAPGIPIEP SIRSAEALAL 251 300 ENSTTRP00000001739/1-451 S--------- ------DCRL HICLYYREVL VKELTTSSPE GCRLSHAHTY ENSP00000370343/1-451 S--------- ------DCRL HICLYYREIL VKELTTSSPE GCRISHGHTY ENSBTAP00000003812/1-454 S--------- ------DCRL HICLYYREVL VKELTTSSPE GCRISHGHTY bmy_04313T0/1-466 SAPWLLSTDP DGSVFADCRL HICLYYREVL VKELTTSSPE GCRLSHAHTY BACU005093/1-508 S--------- ------DCRL HICLYYREVL VKELTTSSPE GCRLSHAHTY 301 350 ENSTTRP00000001739/1-451 DASSLDQVLF PYPEDNGQRK NIEKLLSHLE RGVVLWMAPD GLYARRLCQS ENSP00000370343/1-451 DASNLDQVLF PYPEDNGQRK NIEKLLSHLE RGVVLWMAPD GLYAKRLCQS ENSBTAP00000003812/1-454 DASSLDQVLF PYPEDSSQRK NIEKLLSHLE RGVVLWMAPD GLYAKRLCQS bmy_04313T0/1-466 DASSLDQVLF PYPEDNGQRK NIEKLLSHLE RGVVLWMAPD GLYAKRLCQS BACU005093/1-508 DASSLDQVLF PYPEDNGQRK NIEKLLSHLE RGVVLWMAPD GLYAKRLCQS 351 400 ENSTTRP00000001739/1-451 RVYWDGPLAL CSDRPNKLER DQACKLFDTQ QFLSELQAFA HHGRPLPRFQ ENSP00000370343/1-451 RIYWDGPLAL CNDRPNKLER DQTCKLFDTQ QFLSELQAFA HHGRSLPRFQ ENSBTAP00000003812/1-454 RIYWDGPLAI CSDRPNKLER DQTCKLFDTQ QFLSELQAFA HHGRPLPRFQ bmy_04313T0/1-466 RVYWDGPLAL CSDRPNKLER DQACKLFDTQ QFLSELQAFA HHGRPLPRFQ BACU005093/1-508 RVYWDGPLAL CSDRPNKLER DQACKLFDTQ QFLSELQAFA HHGRPLPRFQ 401 450 ENSTTRP00000001739/1-451 VTLCFGEEFP DPQRQRKLIT AHVEPLLARQ LYYFAQQNSG HFLRGYDLPE ENSP00000370343/1-451 VTLCFGEEFP DPQRQRKLIT AHVEPLLARQ LYYFAQQNSG HFLRGYDLPE ENSBTAP00000003812/1-454 VTLCFGEEFP DPQRQRKLIT AHVEPLLARQ LYYFAQQNSG HFLRGYDLPE bmy_04313T0/1-466 VTLCFGEEFP DPQRQRKLIT AHVEPLLARQ LYYFAQQNSG HFLRGYDLPE BACU005093/1-508 VTLCFGEEFP DPQRQRKLIT AHVEPLLARQ LYYFAQQNSG HFLRGYDIPE 451 500 ENSTTRP00000001739/1-451 HVSSPEDFHR PIRHSSIQE- ---------- ---------- ---------- ENSP00000370343/1-451 HISNPEDYHR SIRHSSIQE- ---------- ---------- ---------- ENSBTAP00000003812/1-454 HVGGPEDFHR PPRHSSIQE- ---------- ---------- ---------- bmy_04313T0/1-466 HVSSPEDFHR PIRHSSIQE- ---------- ---------- ---------- BACU005093/1-508 HVSSPEDFHR PIRHSSIQEN TTGSNRCLPE HYGELVESKA LEAPRSRYRA 501 550 ENSTTRP00000001739/1-451 ---------- ---------- ------ ENSP00000370343/1-451 ---------- ---------- ------ ENSBTAP00000003812/1-454 ---------- ---------- ------ bmy_04313T0/1-466 ---------- ---------- ------ BACU005093/1-508 PRKTAVFETA PLGESPPQCG NHLHWP