KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:10 2014 Check: 00 .. Name: ENSP00000448310/1-509 Len: 634 Check: 8628 Weight: 1.00 Name: ENSBTAP00000003818/1-512 Len: 634 Check: 609 Weight: 1.00 Name: ENSTTRP00000003361/1-403 Len: 634 Check: 9631 Weight: 1.00 Name: bmy_04871T0/1-574 Len: 634 Check: 6121 Weight: 1.00 Name: BACU003980/1-564 Len: 634 Check: 6226 Weight: 1.00 // 1 50 ENSP00000448310/1-509 MTVTYTARVA NARFGGFSQL LLLWRGSIYK LLWRELLCFL GFYMALSAAY ENSBTAP00000003818/1-512 MTVTYTARVA KARFGGFSKL LLLWRGSIYK LLWRELLCFL GLFMALSAAY ENSTTRP00000003361/1-403 ---------- ---------- ---------- ---------- ---------- bmy_04871T0/1-574 MTVTYTACVA NARFGGFSKL LLLWRGSIYK LLWRELLCFL GLYMALSAAY BACU003980/1-564 MTVTYTACVA NARFGGFSKL LLLWRGSIYK LLWRELLCFL GLYMALSAAY 51 100 ENSP00000448310/1-509 RFVLTEGQKR YFEKLVIYCD QYASLIPVSF VLGFYVTLVV NRWWSQYLCM ENSBTAP00000003818/1-512 RFVLTEEQKR YFEKLVLYCD RYASLIPVSF VLGFYVTLVV HRWWNQYLSM ENSTTRP00000003361/1-403 ---------- ---------- ---------- ---FYVTLVV HRWWNQYLCM bmy_04871T0/1-574 RFVLTEEQKR YFEKLVLYCD QYASLIPVSF VLGFYVTLVV HRWWNQYLCM BACU003980/1-564 RFVLTEEQKR YFEKLVLYCD QYASLIPVSF VLGFYVTLVV HRWWNQYLCM 101 150 ENSP00000448310/1-509 PLPDALMCVV AGTVHGRDDR GRLYRRTLMR YAGLSAVLIL RSVSTAVFKR ENSBTAP00000003818/1-512 PLTDALMCVV VGTVHGHDER GRLYRRTLMR YAGLSGVLIL RSVSTAVFKR ENSTTRP00000003361/1-403 PLPDALMCVV VGTVHGRDER GRLYRRTLMR YAGLSAVLIL RSVSTAVFKR bmy_04871T0/1-574 PLPDALMCVV VGTVHGRDER GRLYRRTLMR YAGLSAVLIL RSVSIAVFKR BACU003980/1-564 PLPDALMCVV VGTVHGRDER GRLYRRTLMR YAGLSAVLIL RSVSTAVFKR 151 200 ENSP00000448310/1-509 FPTIDHVVEA G--------- ---------- ---------- ---------- ENSBTAP00000003818/1-512 FPTIDHVVEA G--------- ---------- ---------- ---------- ENSTTRP00000003361/1-403 FPTIDHVVEA G--------- ---------- ---------- ---------- bmy_04871T0/1-574 FPTIDHVVEA G--------- ---------- ---------- ---------- BACU003980/1-564 FPTIDHVVEA GFMTREERKK FENLNSSYNK YWVPCVWFSA KRKAGGGGRG 201 250 ENSP00000448310/1-509 ---------- -------FMT REERKKFENL NSSYNKYWVP CVWFSNLAAQ ENSBTAP00000003818/1-512 ---------- -------FMT REERKKFENL NSSYNKYWVP CVWFCNLAAQ ENSTTRP00000003361/1-403 ---------- -------FMT REERKKFENL NSSYNKYWVP CVWFSNLAAQ bmy_04871T0/1-574 ---------- -------FMT REERKKFENL NSSYNKYWVP CVWFSNLAAQ BACU003980/1-564 AQRLRVGQIN PDLAPPGFMT REERKKFENL NSSYNKYWVP CVWFSNLAAQ 251 300 ENSP00000448310/1-509 ARREGRIRDN SALKLLLEEL NVFRGKCGML FHYDWISVPL VYTQVVTIAL ENSBTAP00000003818/1-512 ARREGRIRDN GAFKLLLEEL NVFRSKCGML FHYDWISVPL VYTQVVTIAV ENSTTRP00000003361/1-403 AQREGRIRNN GALKLLLEEL TVFRAKCGML FHYDWISVPL VYTQVVTIAV bmy_04871T0/1-574 ARREGRIRDN GALKLLLEEL TVFRGKCGML FHYDWISVPL VYTQVVTIAV BACU003980/1-564 ARREGRIRDN GALKLLLEEL TVFRGKCGML FHYDWISVPL VYTQVVTIAV 301 350 ENSP00000448310/1-509 YSYFLACLIG RQFLDPAQGY KDHDLDLCVP IFTLLQFFFY AGWLKVAEQL ENSBTAP00000003818/1-512 YSYFLACLIG RQFLDPAQGY KDHDLDLCVP IFTLLQFFFY AGWLKVAEQL ENSTTRP00000003361/1-403 YSYFLACLIG RQFLDPAQGY KDHDLDLCVP IFTLLQFFFY AGWLKVAEQL bmy_04871T0/1-574 YSYFLACLIG RQFLDPAQGY KDHDLDLCVP IFTLLQFFFY AGWLKVAEQL BACU003980/1-564 YSYFLACLIG RQFLDPAQGY KDHDLDLCVP VFTLLQFFFY AGWLKVAEQL 351 400 ENSP00000448310/1-509 INPFGEDDDD FETNFLIDRN F--------- ---------- ---------- ENSBTAP00000003818/1-512 INPFGEDDDD FETNFLIDRC F--------- ---------- ---------- ENSTTRP00000003361/1-403 INPFGEDDDD FETNFLIDRN F--------- ---------- ---------- bmy_04871T0/1-574 INPFGEDDDD FETNFLIDRN FQVRLSQLRP SLGSQSGPGP TPAKTRSDIA BACU003980/1-564 INPFGEDDDD FETNFLIDRN F--------- ---------- ---------- 401 450 ENSP00000448310/1-509 ---------- ---------- ---------- -------QVS MLAVDEMYDD ENSBTAP00000003818/1-512 ---------- ---------- ---------- -------QVS MLAVDEMYDD ENSTTRP00000003361/1-403 ---------- ---------- ---------- -------QVS MLAVDEMYDD bmy_04871T0/1-574 PDPSFSLWSP HSYPSTGVHP AVPALFHAPL FPAYPRPQVS MLAVDEMYDD BACU003980/1-564 ---------- ---------- ---------- -------QVS MLAVDEMYDD 451 500 ENSP00000448310/1-509 LAVLEKDLYW DAAEARAPYT AATVFQLRQP SFQGSTFDIT LAKEDMQFQR ENSBTAP00000003818/1-512 LAMLEKDLYW DAAEARAPYT AATAFLMQQP SFQGSTFDIT LAKEDMQFQR ENSTTRP00000003361/1-403 LAMLEKDLYW DAAEARAPYT AATAFLLQQP SFQGSTFDIT LAKEDMQFQR bmy_04871T0/1-574 LAMLEKDLYW DASEARAPYT AATAFLLQQP SFQGSTFDIT LAKEDMQFQR BACU003980/1-564 LAMLEKDLYW DAAEARAPYT AATAFLLQQP SFQGSTFDIT LAKEDMQFQR 501 550 ENSP00000448310/1-509 LDGLDGPMGE APGDFLQRLL PAGAGMVAGG PLGRRLSFLL RKNSCVSEAS ENSBTAP00000003818/1-512 QDGLEAPLNE AHGDFLQRLL PVGTGMGTGG LLGRRVPLLR RKNSHVSEES ENSTTRP00000003361/1-403 QDGVDAPLSD AHGDFLQRLL PVGAGMAAGG LLGRRLSLLR RKNSCVSEES bmy_04871T0/1-574 QDGVDAPLSD AHGDFLQRLL PVGAGMAAGG LLGRRLSLLR RKNSCVSEES BACU003980/1-564 QDGVDAPLSD AHGDFLQRLL PVGAGMAAGG LLGRRLSLLR RKNSCVSEES 551 600 ENSP00000448310/1-509 TGASCSCAVV PEGAAPECSC GDPLLDPGLP EPEAPPPAGP EPLTLIPGP- ENSBTAP00000003818/1-512 MAASCACAGA PDGAVPECGC EGPLVDLGQP EPESEPITGP ESPALVPAPR ENSTTRP00000003361/1-403 TAASCACAGA PDGAAPECSG SDALLLLGLL ELESESHADR EPPA--PRS- bmy_04871T0/1-574 TAASCACAGA PXGAAPECSC GDPLLDLGLP EPESEPHAGH EPPA--PGP- BACU003980/1-564 TAASCACAGA PDGSAPECSC GDPLLDLGLP EPESEPHAGH EPPA--PGP- 601 650 ENSP00000448310/1-509 --VEPFSIVT MPGPRGPAPP WLPSPIGEEE ENLA ENSBTAP00000003818/1-512 APSEPLTVVP LSGTRGPAPP WLPSPIGEEE ESLA ENSTTRP00000003361/1-403 -LAEPFTVVP MP-------- ---------- ---- bmy_04871T0/1-574 -PAEPFTVVP MPGPRGPAPP WLPSPIGEEE ESLT BACU003980/1-564 -PAEPFTVVP MPGPRGPAPP WLPSPIGEEE ESLT