KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:10 2014 Check: 00 .. Name: ENSP00000253673/1-652 Len: 687 Check: 4155 Weight: 1.00 Name: ENSTTRP00000007524/1-639 Len: 687 Check: 6140 Weight: 1.00 Name: ENSBTAP00000003821/1-641 Len: 687 Check: 8795 Weight: 1.00 Name: bmy_04819T0/1-615 Len: 687 Check: 9159 Weight: 1.00 Name: BACU009381/1-585 Len: 687 Check: 5176 Weight: 1.00 // 1 50 ENSP00000253673/1-652 MQGPLLLPGL CFLLSLFGAV TQKTKTSCAK CPPNASCVNN THCTCNHGYT ENSTTRP00000007524/1-639 MQGSSLLPGL CFLLSLSGVV AQKTKGTCRS CPPLSSCVNA THCTCNHGYI ENSBTAP00000003821/1-641 -------MGL CFLLSLSGVV AQKTKGTCTH CPQNAFCVNA THCTCNHGYR bmy_04819T0/1-615 ------MQGL CFLLSLSGVM AQPTKGTCPQ CPQDASCVNA THCSCNRGYI BACU009381/1-585 ---------- ---------M AQKTKGTCRP CPQGASCVNA THCTCNHGYI 51 100 ENSP00000253673/1-652 SGSGQKLFTF PLETCNDINE CTPPYSVYCG FNAVCYNVEG SFYCQCVPGY ENSTTRP00000007524/1-639 SESRQRYFTY PLETCKDIDE CTPPISIYCG VNAECQNTKG SFYCQCKAGY ENSBTAP00000003821/1-641 SESKEKYFSY RFERCEDVDE CKPPISVYCG VNAECQNIIG SFYCHCIDGY bmy_04819T0/1-615 SESRQKYFTY PLEICEE--- ---------- ---------- ---------- BACU009381/1-585 SESRQQYFTY PLEICEDIDE CKPRISIYCG VNAKCQNTKG SFYCHCNAGY 101 150 ENSP00000253673/1-652 RLHSGNEQFS NSNENTCQDT TSSKTTEGRK ELQKIVDKFE SLLTNQTLWR ENSTTRP00000007524/1-639 KALSGKAQFN NANENTCQKT TPSETTSGTK KLQQVVENIK SLLTNETVWG ENSBTAP00000003821/1-641 KLLSGKAQFN NSNENTCQKI TPSKTTNSTK EMQQVVEDIE SHLTGKTVLG bmy_04819T0/1-615 ---------- ---------T TPPETTNSTK ELQQVVENIE SLLTNNTVWG BACU009381/1-585 KLLSGKAQFN NSSENTCQKI TPSETTNSTK ELQQVVENIE SLLTNKTVWG 151 200 ENSP00000253673/1-652 TEGRQEISST ATTILRDVES KVLETALKDP EQKVLKIQND SVAIETQAIT ENSTTRP00000007524/1-639 TE--RRKTTT FTSILQKIES VVLEAALKAP DQKLQKVQNR TVAVETRVVT ENSBTAP00000003821/1-641 VE--RNFTST VTAFLQKVES DVLKTALKAP DQKIQKVQYS TVAVETQVVT bmy_04819T0/1-615 MEERRNITAT FTSILQKIES VVLETALKTP DQKLQKVQNR TVAVETRVVT BACU009381/1-585 MEEGRNITAT FTSILQKIES VVLETALKTP DQKLQKVQNR TVAVETRVVT 201 250 ENSP00000253673/1-652 DNCSEERKTF NLNVQMNSMD IRCSDIIQGD TQGPSAIAFI SYSSLGNIIN ENSTTRP00000007524/1-639 DNCS-TGVIF NLSALMNSMN ISCSDIIQGN TQXXXXXXXX XXXXXXXXXX ENSBTAP00000003821/1-641 DNCS-KRVIL SLNAQVNSMK IHCSDVIQRN IKGTSAVAFV SYSSLGNIIN bmy_04819T0/1-615 DNCS-KAXTF NLNAQMNSMD IHCSDVIQGN TQGPSVVAFI SYSSLGNIIN BACU009381/1-585 DNCS-KAVIF NLNAQMNSMD IHCSDVIQGN TQGPSVVAFV SYSSLGNIIN 251 300 ENSP00000253673/1-652 ATFFEEMDKK DQVYLNSQVV SAAIGPKRNV SLSKSVTLTF QHVK------ ENSTTRP00000007524/1-639 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ENSBTAP00000003821/1-641 A-FFEEMNEK DQVYLNSQVV SAAIEPKKNT SLSQPVILNF QHMK------ bmy_04819T0/1-615 ANFFEEANET DQVYLNSQVV SAAIGPKRNT PLSQAVSLSF QHVKVGQSRN BACU009381/1-585 ATFFEEANET DQVYLNSQVV SAAIGPKRNT PLSQAVSLSF QHVK------ 301 350 ENSP00000253673/1-652 ---------- -----MTPST KKVFCVYWKS TGQ-GSQW-- SRDGCFLIHV ENSTTRP00000007524/1-639 ---------- -----IKSSI KKVFCVYWKG TKE-GGHW-- STEGCFLIQA ENSBTAP00000003821/1-641 ---------- -----VKPGV KKIFCVYWKD TKE-GGRW-- SKDGCALRQA bmy_04819T0/1-615 LYLLRKDTMN LFYFQVKPSI KKVFCVYWKE MKVICLCWDA TFQGVGEYNP BACU009381/1-585 ---------- -----VKPSI KKVFCVYWKG TKE-GGHW-- SMEGCFLIQA 351 400 ENSP00000253673/1-652 NKSHTMCNCS HLSSFAVLMA LTSQEEDPVL TVITYVGLSV SLLCLLLAAL ENSTTRP00000007524/1-639 NKTHSICNAT HLSSFAVLMA IDTQEKDPTL TVITYVGLSL SLLCLLLAAL ENSBTAP00000003821/1-641 NKTHTICSST HLSSFAVLMA LHGQEEDPAL TVITYVGLSL SLLCLLLAAL bmy_04819T0/1-615 RAGKPDCE-- -------LLS AQSQEEDPAL TVITYVGLSL SLLCLFLAAL BACU009381/1-585 NETHSICSCT HLSSFAVLMA FHREEEDPAL TVITYVGLSF SLLCLVLAAL 401 450 ENSP00000253673/1-652 TFLLCKAIRN TSTSLHLQLS LCLFLAHLLF LVGIDRTEPK VLCSIIAGAL ENSTTRP00000007524/1-639 TFLLCKAIQS TSTSLHLQLS LCLFLAHLLF LTAIDRTEIK VLCAIIAGAL ENSBTAP00000003821/1-641 TFLLCKAIQN TSTSLHLQLS LCLFLAHLLF LTAIDRTENK VLCAIIAGAL bmy_04819T0/1-615 TFLLCKAIQN TSTSLHLQLS LCLFLAHLLF LTAVDRTEIK VLCAIIAGAL BACU009381/1-585 TFLLCKAIQN TSTLLHLQLS LCLFLAHLLF LTAIDRTKIK VLCTITAGAL 451 500 ENSP00000253673/1-652 HYLYLAAFTW MLLEGVHLFL TARNLTVVNY SSINRLMKWI MFPVGYGVPA ENSTTRP00000007524/1-639 HYLYLASFTW MLLEGLYLFL TARKLTVVNH SSINRFMKKL MFPVGYGVPA ENSBTAP00000003821/1-641 HYLYLASFTW MLLEGLHLFL TARNLTVVNY SSINRLMKWL MFPVGYGVPA bmy_04819T0/1-615 HYLYLASFIW MLLEGLHLFL TARNLTVVNH SSINRFMKKL MFPVGYGVPA BACU009381/1-585 HYLYLASFVW MLLEGLHLFL TARNLTVVNH SSINRFMKKL MFPVGYGVPA 501 550 ENSP00000253673/1-652 VTVAISAASW PHLYGTADRC WLHLDQGFMW SFLGPVCAIF SANLVLFILV ENSTTRP00000007524/1-639 VIVTISAASR PHLYGTPDHC WLGLQKKFIW ALLVTLGVTI CXXXXXXXXX ENSBTAP00000003821/1-641 VIVAISAASR PHLYGTPDRC WLHLDQKFIW AFLGPVCAII CVNFVFFVMV bmy_04819T0/1-615 VIVAISAASR PHLYGTPDHC WLHLDQKFIW AFLGPVCAII CVNFVFFLLV BACU009381/1-585 VIVAISAASK PHLYGTPDYC WLHLDQKFIW AFLGPICAII CI-------- 551 600 ENSP00000253673/1-652 FWILKRKLSS LNSEVSTIQN TRMLAFKATA QLFILGCTWC LGLLQVGPAA ENSTTRP00000007524/1-639 XXXXXXXXXX XXXXXXXXXX XXMLTLKATA QLFILGCT-C LGVLQLGSAA ENSBTAP00000003821/1-641 FWILKRKLSS LNSEVSTIRN VKMLTLKATA QLFILGCTWF LGLLQVGPAA bmy_04819T0/1-615 LWILKRKLSS LNSDVSTIKN IKMLTLKATA QLFILGCSWC LGILQMGPAA BACU009381/1-585 ---------- ---------- ---------- ---------- ------GPAA 601 650 ENSP00000253673/1-652 QVMAYLFTII NSLQGFFIFL VYCLLSQQVQ KQYQKWFREI VKSKSESETY ENSTTRP00000007524/1-639 PVMDYLSTII NSVQG--VIL VCCLLSQ--- -QVRKWFGEI IKSKSEPETH ENSBTAP00000003821/1-641 RVMAYLFTII NSLQGVFIFL VYCLLSQQVM FQVQKWFGEI IKSKSESEAY bmy_04819T0/1-615 HVMAYLFTII NSLQGFFIFL VYCLLSQ--- -QVQKWFGEI IKSKSGPETH BACU009381/1-585 HVMAYLFTII NSLQGFFIFL VYCLLSQ--- -QVRKWFGEI IKSKSEPETH 651 700 ENSP00000253673/1-652 TLSSKMGPDS KPSEG---DV FP-GQVKRKY ------- ENSTTRP00000007524/1-639 TLSSRFGPDS KPSEG---GG FP-GQVY--- ------- ENSBTAP00000003821/1-641 TLSSRFGADS KPSEG---ET YN-----HRH SRVV--- bmy_04819T0/1-615 TLSSRFGPDS KPSEGMEKSS FPDGLVCIPH SHRIVSQ BACU009381/1-585 TLSSRFGPDS KPSEGMEKSS FPDGLVCIPH SHRIVSQ