KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:12 2014 Check: 00 .. Name: ENSP00000352216/1-541 Len: 551 Check: 4948 Weight: 1.00 Name: ENSBTAP00000003829/1-536 Len: 551 Check: 4694 Weight: 1.00 Name: ENSTTRP00000006757/1-513 Len: 551 Check: 3622 Weight: 1.00 Name: bmy_06237T0/1-542 Len: 551 Check: 5199 Weight: 1.00 Name: BACU011358/1-550 Len: 551 Check: 8110 Weight: 1.00 // 1 50 ENSP00000352216/1-541 ---------M GHSPPVLPLC ASVSLLGGLT FGYELAVISG ALLPLQLDFG ENSBTAP00000003829/1-536 ---------M GRPSLLLPLC ASVSLLGGLT FGYELAVISG ALLPLQLDFG ENSTTRP00000006757/1-513 ---------- -RPSLFLALC ASVSLLGGLT FGYELAVISG ALLPLQLDFG bmy_06237T0/1-542 ---------M GRPSLLLPLC ASVSLLGGLT FGYELAVISG ALLPLQLDFG BACU011358/1-550 MQRQSGMKIY GRPSLLLPLC ASVSLLGGLT FGYELAVISG ALLPLQLDFG 51 100 ENSP00000352216/1-541 LSCLEQEFLV GSLLLGALLA SLVGGFLIDC YGRKQAILGS NLVLLAGSLT ENSBTAP00000003829/1-536 LSCSQQELLV GSLLLGALLA SLVGGCLIDR YGRKQAILGS NLVLLAGSLS ENSTTRP00000006757/1-513 LSCSEQELLV GSLLLGALLA SLVGGFLIDR YGRKQAILGS NLVLLAGSLS bmy_06237T0/1-542 LSCSEQELLV GSLLLGALLA SLVGGFLIDR YGRKQAILGS NLVLLAGSLS BACU011358/1-550 LSCSEQELLV GSLLLGALLA SLVGGFLIDR YGRKQAILGS NLVLLAGSLS 101 150 ENSP00000352216/1-541 LGLAGSLAWL VLGRAVVGFA ISLSSMACCI YVSELVGPRQ RGVLVSLYEA ENSBTAP00000003829/1-536 LGLAGSLAWL LLGRSVAGFA ISLSSMACCI HVSELAGPRQ RGVLVALYEA ENSTTRP00000006757/1-513 LSLASSLAWL VLGRSVAGFA ISLSSMACCI YVSELVGPRQ RGVLVSLYEA bmy_06237T0/1-542 LSLASSLTWL VLGRSVAGFA ISLSSMACCI YVSELVGPRQ RGVLVSLYEA BACU011358/1-550 LSLASSLTWL VLGRSVAGFA ISLSSMACCI YVSELVGPRQ RGVLVSLYEA 151 200 ENSP00000352216/1-541 GITVGILLSY ALNYALAGTP WGWRHMFGWA TAPAVLQSLS LLFLPAGTDE ENSBTAP00000003829/1-536 GITVGVLLSY ALNYALAGAP RGWRHMFGWA AAPALLQSLS LLFLPAGTVG ENSTTRP00000006757/1-513 GITVGILLSY ALNYALAGAL WGWRHMFGWA TAPALLQSLS LLLLPPGTVE bmy_06237T0/1-542 GITVGILLSY ALNYVLAGAL WGWRHMFGWA TAPALLQSLS LLLLPPGTAD BACU011358/1-550 GITVGILLSY ALNYALAGAL WGWRHMFGWA TAPALLQSLS LLLLPPGTAD 201 250 ENSP00000352216/1-541 TATHKDLIPL QGGEAPKLGP GRPRYSFLDL FRARDNMRGR TTVGLGLVLF ENSBTAP00000003829/1-536 AAARKDLIPL QGGEATKLDP GRPRYAFVDL FRARDNMRVR TVLGLGLVLF ENSTTRP00000006757/1-513 AAAHRDLIPL QGGEATKLGL GRPRYSFLDL FRTRDNMRGR TMVGLGLVLC bmy_06237T0/1-542 AAAHRDLIPL QGGEATKLDL GRPRYSFLDL FRTKDNMRGR TTVGLGLVLF BACU011358/1-550 AAAHRDLIPL QGGEATKLDL GRPRYSFLDL FRTRDNMRGR TMVGLGLVLF 251 300 ENSP00000352216/1-541 QQLTGQPNVL CYASTIFSSV GFHGGSSAVL ASVGLGAVKV AATLTAMGLV ENSBTAP00000003829/1-536 QQLTGQPNVL AYASTIFQSV GFQGGSSAVL ASVGLGAVKV AATLMAMGLV ENSTTRP00000006757/1-513 QQLTGQPNVL CYASTIFHSV GFRGASSAVL ASVGLGAVKV AATLTAMGLV bmy_06237T0/1-542 QQLTGQPNVL CYASTIFHSV GFRGASSAVL ASVGLGAVKV AATLTAMGLV BACU011358/1-550 QQLTGQPNVL CYASTIFHSV GFRGASSAVL ASVGLGAVKV AATLTAMGLV 301 350 ENSP00000352216/1-541 DRAGRRALLL AGCALMALSV SGIGLVSFAV PMDSGPSCLA VPNATGQTGL ENSBTAP00000003829/1-536 DRAGRRALLL AGCALMALSV SGLGLVSFAV PLHSGPACLA VPNATRLSGF ENSTTRP00000006757/1-513 DRVGRRALLI AGCALMALSV SGIGLVSFAV PMDSGPSCLA VPNATRLSGF bmy_06237T0/1-542 DRAGRRALLL AGCALMALSV SGIGLVSFAV PMDSGPSCLA MPNATRLSGL BACU011358/1-550 DRAGRRALLL AGCALMALSV SGIGLVSFAV PMDSGPSCLA MPNATRLSGL 351 400 ENSP00000352216/1-541 PGDSGLLQDS SLPPIPRTNE DQREPILSTA KKTKPHPRSG DPSAPPRLAL ENSBTAP00000003829/1-536 PGDSGLPRGL APPLPPTTDQ SPRQPVLSTS EKTRPPPGAE DPT-----AL ENSTTRP00000006757/1-513 PGDSGLPSGL TPPLRPMTDQ SPGRPVLSTS EKTKPHPGAG DPTALPLPAL bmy_06237T0/1-542 PGDSGLPSGL APPLRPMTDQ SPGRPVLSTS EKTKPHPGAG DPTALPLPAL BACU011358/1-550 PGDSGLPRGL APPLRPMTDQ SPGRPVLSTS EKTKPHPGAG DPTTLPLPAL 401 450 ENSP00000352216/1-541 SSALPGPPLP ARGHALLRWT ALLCLMVFVS AFSFGFGPVT W-LVLSEIYP ENSBTAP00000003829/1-536 SLTPPARLSP TPEHALLHWT ALVCMMVFVS AFSIGFGPVT W-LVLSEIYP ENSTTRP00000006757/1-513 SIMPAARPSP APEHALLHWT ALVCMMLFVS AFSFSFGPVT W-LVLSEVYP bmy_06237T0/1-542 SIAPAAPPSP APEHALLHWT ALVCMMLFVS AFSFGFGPGK WEFSCSEIYP BACU011358/1-550 SIAPAAPPSP APEHALLHWT ALVCMMLFVS AFSFGFGPVT W-LVLSEIHP 451 500 ENSP00000352216/1-541 VEIRGRAFAF CNSFNWAANL FISLSFLDLI GTIGLSWTFL LYGLTAVLGL ENSBTAP00000003829/1-536 VEIRGRAFAF CNSFNWAANL FISLSFLDLI GAIGLSWTFL LYGLTAVFGL ENSTTRP00000006757/1-513 VEIRGRAFAF CNSFNWAANL FISLSFLDLI GAIGLSWTFL LYGLTAVFGL bmy_06237T0/1-542 VEIRGRAFAF CNSFNWAANL FISLSFLDLI GAIGLSWTFL LYGLTAVFGL BACU011358/1-550 VEIRGRAFAF CNSFNWAANF FISLSFLDLI GAIGLSWTFL LYGLTAVFGL 501 550 ENSP00000352216/1-541 GFIYLFVPET KGQSLAEIDQ QFQKRRFTLS FGHRQNSTGI PYSRIEISAA ENSBTAP00000003829/1-536 GFIYLFVPET KGQSLADIDQ QFQKKWFPLS FGHRQSSAGV QYSRIEVSAA ENSTTRP00000006757/1-513 GFIYLFVPET KGQSLTEIDQ QFQKR----- ---------- ---------- bmy_06237T0/1-542 GFIYFFVPET KGQSLTEIDQ QFQKRRFALS FGHRQSSAGI QYSRIEVAAA BACU011358/1-550 GFIYFFVPET KGQSLTEIDQ QFQKRRFALS FGHRQSSAGI QYSRIEVSAA 551 600 ENSP00000352216/1-541 S ENSBTAP00000003829/1-536 S ENSTTRP00000006757/1-513 - bmy_06237T0/1-542 S BACU011358/1-550 S