KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:16 2014 Check: 00 .. Name: ENSP00000263285/1-655 Len: 700 Check: 770 Weight: 1.00 Name: ENSBTAP00000003840/1-548 Len: 700 Check: 5673 Weight: 1.00 Name: ENSTTRP00000008598/1-652 Len: 700 Check: 5909 Weight: 1.00 Name: bmy_06325T0/1-694 Len: 700 Check: 764 Weight: 1.00 Name: BACU003867/1-597 Len: 700 Check: 4833 Weight: 1.00 // 1 50 ENSP00000263285/1-655 MVAPKSHTDD WAPGPFSSKP QRSQLQIFSS VLQTSLLFLL MGLRASGKDS ENSBTAP00000003840/1-548 MASPRRHTDD WAPQPFSNKP PKSQPHVFSP YLWTLLLFLL LGQGASEKDS ENSTTRP00000008598/1-652 MASPGRQTDG WALQTLSNKP PESQPHIFSP FLWIPLLFLL MGLGASEKDS bmy_06325T0/1-694 MASPRRQTDG WALQPFFNKP PKSQPHISSP FLWTTLLFLL MGLGASEKDS BACU003867/1-597 ---------- ---------- ---------- ---------- MGLGASEKDS 51 100 ENSP00000263285/1-655 APTVVSGILG GSVTLPLNIS VDTEIENVIW IGPKNALAFA RPKENVTIMV ENSBTAP00000003840/1-548 ASTVVKAIVG GSVILSLNIS VDAEIEQITW SGPKDALVLA FPSGEILFLD ENSTTRP00000008598/1-652 TPTVVKGILG GSVILSLNIS VDAEIEHITW SGPQQALALA DASGKIILID bmy_06325T0/1-694 APTVVKGILG GSVILSLNIS VDTEIEHIAW SGPQEALALA DARGKIIFID BACU003867/1-597 APTVVKGILG GSVILSLNIS VDTEIEHIAW SGPQEALALA DARGKIIFID 101 150 ENSP00000263285/1-655 KSYLGRLDIT KWSYSLCISN LTLNDAGSYK AQINQRNFEV TTEEEFTLFV ENSBTAP00000003840/1-548 KSYKGRINIP K-NNSLSINK LTLKDAGSYK ARINQKGSE- DFNERFILYI ENSTTRP00000008598/1-652 KSYQGRINVT Q-DNSLSINK LTLKDAGSYK AQINQKNSKV TTSEKFTLSI bmy_06325T0/1-694 KSYQGRINIT Q-NNSLSINK LTLKDAGSYK AQINQKNSEV TTSEKFTLSI BACU003867/1-597 KSYQGRINII Q-NNSLSINK LTLKDAGAYK AQINQKNSEV TTSEKFTLSI 151 200 ENSP00000263285/1-655 YEQLQEPQVT MKSVKVSENF SCNITLMCSV KGAEKSVLYS WTPREPHASE ENSBTAP00000003840/1-548 YEQLQEPQVT IQSVNVSENA SCTITLVCSV EGAGGDIQYK WTSRDPHASE ENSTTRP00000008598/1-652 YEQLQEPRVT MKSVNMSENA SCNITLVCSV KGAGEDVQYY WTSRDPHASE bmy_06325T0/1-694 YEQLQEPRVT VKSVNMSENA SCNITLVCSV KGAGEDVQYY WTSRDPHASE BACU003867/1-597 YEQLQEPRVT MTSVNMSENA SCNITLVCSV KGAGEDVQYY WTSRDPHASE 201 250 ENSP00000263285/1-655 SNGGSILTVS RTPCDPDLPY ICTAQNPVSQ RSSLPVHVGQ FCTDPGASRG ENSBTAP00000003840/1-548 SWGHPTLTIS WLPCDADLPY TCTAKNPVSQ SSSHPVHVSQ FCTDLGASRG ENSTTRP00000008598/1-652 SWGGPSLTIS WLPCDPNLPY ICRAKNPVSQ SSSRPVHAWQ FCTDLGASRG bmy_06325T0/1-694 SWVGPSLTIS WLPCDSDLPY ICRAKNPVSQ SSSRPVHAWQ FCTDLGASRG BACU003867/1-597 SWVGPSLTIS WLPCDSDLPY ICRAKNPVSQ SNSRPVHAWQ FCTDLGASRG 251 300 ENSP00000263285/1-655 GTTGETVVGV LGEPVTLPLA LPACRDTEKV VWLFNTSIIS KEREEAATAD ENSBTAP00000003840/1-548 GPMGKTVLGV LGESITLSLA LLDSQHIDNV VWIFNTSIIS KEWREEATAN ENSTTRP00000008598/1-652 RPMGETVAGI LGESITLSLA LPDSQHIDNV VWMFNTSIIS KERGEEATAN bmy_06325T0/1-694 GPMGETVAGI LGESITLSLA LPHSQHIDNV VWMFNTSIIS KEWGEEATAN BACU003867/1-597 GPVGETVAGI LGESITLYLA LPHSQHIDNV VWMFNTSIIS KERGEEATAN 301 350 ENSP00000263285/1-655 PLIKSRDPYK NRVWVSSQDC SLKISQLKIE DAGPYHAYVC SEASSVTSMT ENSBTAP00000003840/1-548 QLIEFKDPDQ NTVWVSSQDY SLKIVQLKME HAGLYQAYLC SNA-RVASVK ENSTTRP00000008598/1-652 QLIKFKDPNQ STVWVSSQDY SLKIGQLKME DAGPYHAYVC SNA-RVASTK bmy_06325T0/1-694 QLIKFKDPNQ NTAWVSSQDY SLKIGQLKME DAGPYHAYVC SNA-RVASTK BACU003867/1-597 QLIKFKDPNQ NTAWVSSQDY SLKIGQLKME DAGPYHAYVC SNA-RVASTK 351 400 ENSP00000263285/1-655 HVTLLIYRRL RKPKITWSLR HSEDGICRIS LTCSVEDGGN TVMYTWTPLQ ENSBTAP00000003840/1-548 HINLRIYR-- ---------- ---------- ---------- ---------- ENSTTRP00000008598/1-652 HINLSIYRRL RKPKVTRSLG LTEDGVCRIS LTCSVEDSGH NVTYRWSPLQ bmy_06325T0/1-694 HINLSIYRRL KKPKVTGSLG LTEDGVCRVS LTCSVEDSGH NVTYRWSPLQ BACU003867/1-597 HINLSIYRRL KKPRVTGNLG LTEDGVCRVS LTCSVEDSGH NVTYRWSPLQ 401 450 ENSP00000263285/1-655 KEAVVSQGES HLNVSWRSSE NHPNLTCTAS NPVSRSSHQF LSENICSG-- ENSBTAP00000003840/1-548 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008598/1-652 KGAVVSQGGA HLSVSWRSGE -HPSFTCRAS NPVSNSSQQF LSRDLCPG-- bmy_06325T0/1-694 KGAVVSQGGA HLSVSWRSGE KHPSFTCRAS NPVSNSSQQF LSKDLCPGCS BACU003867/1-597 KGAVVSQGGA HLSVSWRSGE KHPSFTCRAS NPVSNSSQQF LSRDLCPG-- 451 500 ENSP00000263285/1-655 ---------- PERNTKLWIG LFLMV--CLL CVGIFSWCIW KRKGRCSVPA ENSBTAP00000003840/1-548 ---------- PERSTEFWIG LSLVVLFILL SLGISGWCFW KQQRQWSAPA ENSTTRP00000008598/1-652 ---------- PERRTALWSG ISLMVLFTLL CFGISGWCFW KKKGRCSAPA bmy_06325T0/1-694 PVQPDLRALR PERRTALWFG LSLMVLFTLL CFGISGWCFW KKKGRCSAPA BACU003867/1-597 ---------- PERRTALWSG LSLMVLFTLL CFGISGWCFW KKKGRCSAPA 501 550 ENSP00000263285/1-655 FCSSQAEAPA DTP------- ---------- ---------- --EPTAGHTL ENSBTAP00000003840/1-548 FSSSQAETSV DTP------- ---------- ---------- ---------- ENSTTRP00000008598/1-652 FRSSQVEAPA DTP------- ---------- ---------- --EPTADHTV bmy_06325T0/1-694 FSSSQVEAPA DTPGVRAAWI LAQSKREKGA GTRFTNPAQC VPEPTADHTV BACU003867/1-597 FSSSQVEAPA DTP------- ---------- ---------- ---------- 551 600 ENSP00000263285/1-655 YSVLSQGYEK LDTPLRPARQ QPTPTSDSSS DSNLTTEEDE DRPEVHKPIS ENSBTAP00000003840/1-548 ------GYEK LDTFPKTARH ----ASDSSS DSNGTTEEDE ERTGMHQPVN ENSTTRP00000008598/1-652 CSMLSQGYEK VDTFPKTARH ----VSDSSS DSNGTTEEDE ERTEMHQPVN bmy_06325T0/1-694 YSMLSQGYEK VDTFPKTARH ----VSDSSS DSNGTTEEDE ERTERHQPVN BACU003867/1-597 ------GYEK VDTFPKTARH ----VSDSSS DSNGTTEEDE ERTERHQSVN 601 650 ENSP00000263285/1-655 GRYEVFDQVT QEGAGHDPAP EGQADYDPVT PYVTEVESVV GENTMYAQVF ENSBTAP00000003840/1-548 GRDQVCDSVT REDAGLDSDS EGQPEYDQVT PDNMAPALAV EGETVYTQVF ENSTTRP00000008598/1-652 GRDQVCDLVT QEDAGHDSDS EGQTEYYLVT PDDTTPALAI EGETVYTQVF bmy_06325T0/1-694 GRDQVCDLVT QEDAGHDSDS EGQAEYDLVT PDDTAPALAI EGETVYTQVF BACU003867/1-597 GRDQVCDLVT QEDAGHD--S EGQAEYDLVT PDDTAPALVT EGETVYTQVF 651 700 ENSP00000263285/1-655 -NLQGKTPVS QKEESSATIY CSIRKPQ-VV PPPQQNDLEI PESPTYENFT ENSBTAP00000003840/1-548 LHLPGKTPVP QKKENSATVY CSIQKPQKVV PPSQQNDLKS PEIPTYENVP ENSTTRP00000008598/1-652 LDFQGQTTVP QKKEKSATIY CSIQKPQKVV PAPQQNALES PEISTYENVP bmy_06325T0/1-694 LDFQRQTPVP QKKEKSATIY CSIQKSQKVV PAPQQNDLGS PEISTYENVP BACU003867/1-597 LDFQRQTPVP QKKERSATIY CSIQKPQKVV PAPQQNDLES PEISTYENVP