KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:22:17 2014 Check: 00 .. Name: ENSP00000357012/1-370 Len: 416 Check: 598 Weight: 1.00 Name: ENSBTAP00000003843/1-373 Len: 416 Check: 252 Weight: 1.00 Name: bmy_06326T0/1-353 Len: 416 Check: 750 Weight: 1.00 Name: ENSTTRP00000008636/1-369 Len: 416 Check: 9357 Weight: 1.00 // 1 50 ENSP00000357012/1-370 MLGQVVTLIL LLLLKVYQGK GCQGSADHVV SISGVPLQLQ PNSIQTKVDS ENSBTAP00000003843/1-373 MLGQVLALTL LLLIKGHQGQ ---GSTDHVV GISGEPVWLR PRSLQTNTYS bmy_06326T0/1-353 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008636/1-369 MLGQAITLTL FLLIKGHRGQ ESLGSADHVV GISGESVWLR SPSIQIRTYS 51 100 ENSP00000357012/1-370 IAWKKLLPSQ NGFHHILKWE NGS------- ---LPSNTSN DRFSFIVKNL ENSBTAP00000003843/1-373 VKWKIQPYSN SSNCFTWSWS NYSGRIEVRR TLGQNPNCFN KSFNFTSKDF bmy_06326T0/1-353 ----MQPDSN SSCFLIHSWK NVSSQSNVGK SLNRTPNHFN NRLSFISENL ENSTTRP00000008636/1-369 VIWKMKPYSN SSCYFIYSWK NVS------- ---WTSNHFN NRLSFIRENL 101 150 ENSP00000357012/1-370 SLLIKAAQQQ DSGLYCLEVT SISGKVQTAT FQVFVFESLL PDKVEKPRLQ ENSBTAP00000003843/1-373 TLLIEAAQPQ DSGLYILEVT SHAGNVWKHQ FNVSIFESLL LDRVEKPHLV bmy_06326T0/1-353 TLLIMAVQQQ DSGLYLLEVT EDTGKVWRHK FQVSVF---- -DRVEKPQLV ENSTTRP00000008636/1-369 TLLIMAAQQQ DSGLYLLEVT EDTGKVWRHQ FQVSVFASLL PDRVEKPQLV 151 200 ENSP00000357012/1-370 GQGKILDRGR CQVALSCLVS RDGNVSYAWY RGSKLIQTAG NLTYLDEEVD ENSBTAP00000003843/1-373 EKWKVLDGGI CQVTLSCSVA RGGDVSYAWY KGSNLIQIPG NITELVENID bmy_06326T0/1-353 ERWKVLDRGM CQVTLSCSVS RGGDVSYAWY KGTELIQTPR NLTKLEEQID ENSTTRP00000008636/1-369 ERWKVLDRGM CQVTLSCSVS RGSDVSYAWY KGTELIQTPR NLTKLEEQID 201 250 ENSP00000357012/1-370 INGTHTYTCN VSNPVSWESH TLNLTQDCQN AHQEFRFWPF LV-IIVILSA ENSBTAP00000003843/1-373 VNASHVYTCN VSNPVSWANH SLQLTQGCQS DHQDFTFLII LVSIVILLVA bmy_06326T0/1-353 VSGLHTYTCN VSNPVSWANH TLQLTQGCLN AHLNFIFLSI LVSIVILLTA ENSTTRP00000008636/1-369 VSGLHTYTCN VSNPVSWANH TLQLTQGCLN AYSNFIFLST LVSIMILLTA 251 300 ENSP00000357012/1-370 LFLGTLACFC VWRRKRKEKQ SETSPKEFLT IYEDVKDLKT RRNHEQEQTF ENSBTAP00000003843/1-373 LFLSTLTYIC VWRRKR--KQ SRTSPK-VLT IYEDVNNLRT RSNQ--EQKP bmy_06326T0/1-353 LFLGTLTCFC VRRWKR--KQ SQTRPEEFLT IYEDVNNVQT RRNQ--EQNS ENSTTRP00000008636/1-369 LFLGALTCYY VRRWKR--KQ SQTRPEEFLT IYEDVNNVQT RRNQXXXXXX 301 350 ENSP00000357012/1-370 PGGGSTIYSM IQSQSSAPTS QEPAYTLYSL IQPSRK---- ---------- ENSBTAP00000003843/1-373 LGEGNTIYST IQAQASASTS QDNANTLYSL VQASWK---- ---------- bmy_06326T0/1-353 PGEGHTIYSM IQSQSSASTS QDNANTLYSL VQSSWKVMKA LYTTESASEF ENSTTRP00000008636/1-369 XXXXXXXXXX XXXXSSASTS QDNAHTSYSL VQSSWK---- ---------- 351 400 ENSP00000357012/1-370 ---------- -SGSRKRNHS PSFNSTIYEV --IGKSQPKA QNPAR--LSR ENSBTAP00000003843/1-373 ---------- -TGSKKTKQS PSFDKTIYEE --VGKRPSKA ENPAR--LSR bmy_06326T0/1-353 LHCLQCFTMF RSGSKKTNRN TSFNKTVYEE QPIGTRGPSI NMSVQLLLER ENSTTRP00000008636/1-369 ---------- -SGSKKTNRN TSVNKTIYEE --VGKRAPKA ENPAR--LSR 401 450 ENSP00000357012/1-370 KELENFDVYS ------ ENSBTAP00000003843/1-373 RELENFCIYS ------ bmy_06326T0/1-353 SLAVSPSLRS HWNHRF ENSTTRP00000008636/1-369 RELENFCVYS ------