KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:17 2014 Check: 00 .. Name: ENSTTRP00000001113/1-232 Len: 466 Check: 1509 Weight: 1.00 Name: ENSBTAP00000003860/1-464 Len: 466 Check: 8807 Weight: 1.00 Name: ENSP00000387046/1-247 Len: 466 Check: 4025 Weight: 1.00 Name: bmy_11555T0/1-461 Len: 466 Check: 5931 Weight: 1.00 Name: BACU005556/1-408 Len: 466 Check: 975 Weight: 1.00 // 1 50 ENSTTRP00000001113/1-232 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003860/1-464 SGAGLASRRN TPSRPLPCPR ALGCGASGVL SGRRPPLTRA CGSSSGTNDA ENSP00000387046/1-247 ---------- ---------- ---------- ---------- ---------- bmy_11555T0/1-461 MSADWFRRRF LPGGPLPAPR PPRPRASPV- PYRRPRFLRG SGSSPGTADA BACU005556/1-408 ---------- ---------- ---------- -------MLG FG-------- 51 100 ENSTTRP00000001113/1-232 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003860/1-464 SRRPDARPVR SPVRGRSLPW NAGYAE-IIN AEKSEFNEDQ AACGKLCIRR ENSP00000387046/1-247 ---------- ---------- ---------- ---------- ---------- bmy_11555T0/1-461 SCRPNARPVR SPVRGRALPW NAGYAE-IIN AEKSEFNEDQ AACGKLCIRR BACU005556/1-408 --------VE AKVGKDLPPW --GFQKRIIN AEKSEFNEDQ AACGKLCIRR 101 150 ENSTTRP00000001113/1-232 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003860/1-464 CEFGVEEDQE WQTLCSEEFL TGHYWALFDG HGGPAAAILA ANTLHSCLRR ENSP00000387046/1-247 ---------- ---------- ---------- ---------- ---------- bmy_11555T0/1-461 FEFGVEEDQE WLTLCPEEFL TGHYWALFDG HGGPAAAILA ANTLHSCLRR BACU005556/1-408 FEFGVEEDQE WLTLCPEEFL TGHYWALFDG HGGPAAAILA ANTLHSCLRR 151 200 ENSTTRP00000001113/1-232 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003860/1-464 QLEAVVEGMV ATQPPMHLSG CCVCPSDPQF VEEKGIRTED LVIGALESAF ENSP00000387046/1-247 ---------- ---------- ---------- ---------- ---------- bmy_11555T0/1-461 QLEAVVEGMV ATQPPMHLSG HCIRPSDPQF VEEKGIRAED LVVGALESAF BACU005556/1-408 QLEAVVEGMV ATQPPMHLSG HCIRPSDPQF VEEKGIRAED LVVGALESAF 201 250 ENSTTRP00000001113/1-232 ---DEVIGRE LEASGQVGGC TALVAVTLQG KLYVANAGDS RAILVRRDEV ENSBTAP00000003860/1-464 QECDEVIGRE LEASGQVGGC TALVAVSLKG KLYVANAGDS RAILVRRDEV ENSP00000387046/1-247 ---------- ------MGGC TALVAVSLQG KLYMANAGDS RAILVRRDEI bmy_11555T0/1-461 QECDEVIGRE LEASGQVGGC TALVAVTLQG KLYVANAGDS RAILVRRDEV BACU005556/1-408 QECDEVIGRE LEASGQVGGC TALVAVTLQG KLYVANAGDS RAILVRRDEV 251 300 ENSTTRP00000001113/1-232 RPLSSEFTPE TERQRIQQL- -AFLYPELLA GEFTRLEFLR RLXXXXXXXX ENSBTAP00000003860/1-464 RPLSSEFTPE TERQRIQQLV GALSYPELLA GEFTRLEFPR RLKGDDLGQK ENSP00000387046/1-247 RPLSFEFTPE TERQRIQQL- -AFVYPELLA GEFTRLEFPR RLKGDDLGQK bmy_11555T0/1-461 RPLSSEFTPE TERQRIQQL- -AFLYPELLA GEFTRLEFPR RLKGDDLGQK BACU005556/1-408 RPLSSEFTPE TERQRIQQL- -AFLYPELLA GEFTRLEFPR RLKGDDLGQK 301 350 ENSTTRP00000001113/1-232 XXXXXXXXXX XXXXXVEQSD LKYPLIHGQG RQARLLGTLA VSRGLGDHQL ENSBTAP00000003860/1-464 VLFRDHHMSG WSYKCVEKSD LKYPLIHGQG RQARLLGTLA VSRGLGDHQL ENSP00000387046/1-247 VLFRDHHMSG WSYKRVEKSD LKYPLIHGQG RQARLLGTLA VSRGLGDHQL bmy_11555T0/1-461 VLFRDHHMSG WSYKCVEQSD LKYPLIHGQG RQARLLGTLA ISRGLGDHQL BACU005556/1-408 VLFRDHHMSG WSYKCVEQSD LKYPLIHGQG RQARLLGTLA VSRGLGDHQL 351 400 ENSTTRP00000001113/1-232 KVLDTNIQLK PFLLSVPQVT VLDMDQLEPQ EEDVVVMATD GLWDVLSSEQ ENSBTAP00000003860/1-464 RVLDTNIQLK PFLLSVPQVT VLNMDQLEPQ EEDVVVMATD GLWDVLSNEQ ENSP00000387046/1-247 RVLDTNIQLK PFLLSVPQVT VLDVDQLELQ EDDVVVMATD GLWDVLSNEQ bmy_11555T0/1-461 KVLDTNIQLK PFLLSVPQVT VLDMDQLEPQ EEDIVVMATD GLWDVLSNEQ BACU005556/1-408 KVLDTNIQLK PFLLSVPQVT VLDMDQLEPQ EEDIVVMATD GLWDVLSNEQ 401 450 ENSTTRP00000001113/1-232 VARLVRSFLP GNREDPHRY- -------YSC WG-------- --------SA ENSBTAP00000003860/1-464 VAWLVRSFLL GNREDPHRFS ELAKMLIRST QGTDDSPIQE GQVSYDDVSV ENSP00000387046/1-247 VAWLVRSFLP GNQEDPHRFS KLAQMLIHST QGKEDSLTEE GQVSYDDVSV bmy_11555T0/1-461 VARLVRSFLP GNREDPHRFS ELAQMLIHST QGKDDSPTQD GQVSYDDVSV BACU005556/1-408 VARLVRSFLP GNREDPHRFS ELAQMLIHST QGKDDSPTQE GQVSYDDVSV 451 500 ENSTTRP00000001113/1-232 WAV-----GA SRNTKK ENSBTAP00000003860/1-464 FVIPLHHQGQ GHSSR- ENSP00000387046/1-247 FVIPLHSQGQ ESSDH- bmy_11555T0/1-461 FVIPLHNQGQ GRSSH- BACU005556/1-408 FVIPLHNQGQ GRSSH-