KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:20 2014 Check: 00 .. Name: ENSP00000310260/1-887 Len: 888 Check: 4215 Weight: 1.00 Name: ENSBTAP00000003868/1-879 Len: 888 Check: 1899 Weight: 1.00 Name: ENSTTRP00000009008/1-888 Len: 888 Check: 5054 Weight: 1.00 Name: bmy_09776T0/1-728 Len: 888 Check: 5261 Weight: 1.00 Name: BACU019583/1-828 Len: 888 Check: 9579 Weight: 1.00 // 1 50 ENSP00000310260/1-887 MPILLFLIDT SASMNQRSHL GTTYLDTAKG AVETFMKLRA RDPASRGDRY ENSBTAP00000003868/1-879 MPILLFLIDT SASMNQRSHL GTTYLDTAKG AVETFMKL-A RVTAGPGR-- ENSTTRP00000009008/1-888 MPILLFLIDT STSMNQRSHL DTTYLDTAKG AIETFMKLRA RDPASRGDRY bmy_09776T0/1-728 ---------- ---------- ---------- ---------- ---------- BACU019583/1-828 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000310260/1-887 MLVTFEEPPY AIKAGWKENH ATFMNELKNL QAEGLTTLGQ SLRTAFDLLN ENSBTAP00000003868/1-879 -----AEPGF ALKAGWKENH ATFMNELKNL QAEGLTTLGQ SLRTAFDLLN ENSTTRP00000009008/1-888 MLVTFEEPPY AIKAGWKENH ATFMNELKNL QAEGLTTLGQ SLRTAFDLLN bmy_09776T0/1-728 -------MSF S----YK--- ---------- ---------- ---------- BACU019583/1-828 ---------F SFQAGWKENH ATFMNELKNL QAEGLTTLGQ SLRTAFDLLN 101 150 ENSP00000310260/1-887 LNRLVTGIDN YGQGRNPFFL EPAIIITITD GSKLTTTSGV QDELHLPLNS ENSBTAP00000003868/1-879 LNRLVTGIDN YGQGRNPFFL EPAIIITITD GSKLTTTSGV QDELHLPLNS ENSTTRP00000009008/1-888 LNRLVTGIDN YGQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXELHLPLNS bmy_09776T0/1-728 ---------- ----VLVTFE CDSFLGEIVL EILLFFISPY FQ-LHLPLNS BACU019583/1-828 LNRLVTGIDN YGQVVLICVI NVAFLGEIVL EILLFFISPY FQ-LHLPLNS 151 200 ENSP00000310260/1-887 PLPGSELTKE PFRWDQRLFA LVLRLPGTMS VESEQLTGVP LDDSAITPMC ENSBTAP00000003868/1-879 PLPGSELTKE PFRWDQRLFA LVLRLPGTMS VESEQLTGVP LDDSAITPMC ENSTTRP00000009008/1-888 PLPGSELTKE PFRWDQRLFA LVLRLPGTMS VESEQLTGVP LDDSAITPMC bmy_09776T0/1-728 PLPGSELTKE PFRWDQRLFA LVLRLPGTMS VESEQLTGVP LDDSAITPMC BACU019583/1-828 PLPGSELTKE PFRWDQRLFA LVLRLPGTMS VESEQLTGVP LDDSAITPMC 201 250 ENSP00000310260/1-887 EVTGGRSYSV CSPRMLNQCL ESLVQKVQSG VVINFEKAGP DPSPVEDGQP ENSBTAP00000003868/1-879 EVTGGRSYSV CSPRMLNQCL ESLVQKVQSG VVINFEKAGP DPSPVEDGQP ENSTTRP00000009008/1-888 EVTGGRSYSV CSPRMLNQCL ESLVQKVQSG VVINFEKAGP DPSPVEDGQP bmy_09776T0/1-728 EVTGGRSYSV CSPRMLNQCL ESLVQKVQSG VVINFEKAGP DPSPVEDGQP BACU019583/1-828 EVTGGRSYSV CSPRMLNQCL ESLVQKVQSG VVINFEKAGP DPSPVEDGQP 251 300 ENSP00000310260/1-887 DISRPFGSQP WHSCHKLIYV RPNPKTGVPI GHWPVPESFW PDQNSPTLPP ENSBTAP00000003868/1-879 DISRPFGSQP WHSCHKLIYV RPNPKTGVPI GHWPVPESFW PDQNSPTLPP ENSTTRP00000009008/1-888 DVSRPLGSQP WHSCHKLIYV RPNPKTGVPI GHWPVPESFW PDQNSPTLPP bmy_09776T0/1-728 DVSRPLGSQP WHSCHKLIYV RPNPKTGVPI GHWPVPESFW PDQNSPTL-- BACU019583/1-828 DVSRPLGSQP WHSCHKLIYV RPNPKTGVPI GHWPVPESFW PDQNSPTLPP 301 350 ENSP00000310260/1-887 RTSHPVVKFS CTDCEPMVID KLPFDKYELE PSPLTQFILE RKSPQTCWQV ENSBTAP00000003868/1-879 RTSHPIVKFS CTDCEPMVID KLPFDKYELE PSPLTQFILE RKSPQTCWQV ENSTTRP00000009008/1-888 RTSHPVVKFS CTDCEPMVID KLPFDKYELE PSPLTQFILE RKSPQTCWQV bmy_09776T0/1-728 ---------- ---------- ---------- ---------- ---------V BACU019583/1-828 RTSHPVVKFS CTDCEPMVID KLPFDKYELE PSPLTQFILE RKSPQTCWQV 351 400 ENSP00000310260/1-887 YVSNSAKYSE LGHPFGYLKA STALNCVNLF VMPYNYPVLL PLLDDLFKVH ENSBTAP00000003868/1-879 YVSNSAKYSE LGHPFGYLKA STALNCVNLF VMPYNYPVLL PLLDDLFKVH ENSTTRP00000009008/1-888 YVSNSAKYSE LGHPFGYLKA STALNCVNLF VMPYNYPVLL PLLDDLFKVH bmy_09776T0/1-728 YVSNSAKYSE LGHPFGYLKA STALNCVNLF VMPYNYPVLL PLLDDLFKVH BACU019583/1-828 YVSNSAKYSE LGHPFGYLKA STALNCVNLF VMPYNYPVLL PLLDDLFKVH 401 450 ENSP00000310260/1-887 KAKPTLKWRQ SFESYLKTMP PYYLGPLKKA VRMMGAPNLI ADSMEYGLSY ENSBTAP00000003868/1-879 KAKPTLKWRQ SFESYLKTMP PYYLGPLKKA VRMMGAPNLI ADSMEYGLSY ENSTTRP00000009008/1-888 KAKPTLKWRQ SFESYLKTMP PYYLGPLKKA VRMMGAPNLI ADSMEYGLSY bmy_09776T0/1-728 KAKPTLKWRQ SFESYLKTMP PYYLGPLKKA VRMMGAPNLI ADSMEYGLSY BACU019583/1-828 KAKPTLKWRQ SFESYLKTMP PYYLGPLKKA VRMMGAPNLI ADSMEYGLSY 451 500 ENSP00000310260/1-887 SVISYLKKLS QQAKIESDRV IGSVGKKVVQ ETGIKVRSRS HGLSMAYRKD ENSBTAP00000003868/1-879 SVISYLKKLS QQAKIESDRV IGSVGKKVVQ ETGIKVRSRS HGLSMAYRKD ENSTTRP00000009008/1-888 SVISYLKKLS QQAKIESDRV IGSVGKKVVQ ETGIKVRSRS HGLSMAYRKD bmy_09776T0/1-728 SVISYLKKLS QQAKIESDRV ISSVGKKVVQ ETGIKVRSRS HGLSMAYRKD BACU019583/1-828 SVISYLKKLS QQAKIESDRV ISSVGKKVVQ ETGIKVRSRS HGLSMAYRKD 501 550 ENSP00000310260/1-887 FQQLLQGISE DVPHRLLDLN MKEYTGFQVA LLNKDLKPQT FRNAYDIPRR ENSBTAP00000003868/1-879 FQQLLQGISE DVPHRLLDLN MKEYTGFQVA LLNKDLKPQT FRNAYDIPRR ENSTTRP00000009008/1-888 FQQLLQGISE DVPHRLLDLN MKEYTGFQVA LLNKDLKPQT FRNAYDIPRR bmy_09776T0/1-728 FQQLLQGISE DVPHRLLDLN MKEYTGFQVA LLNKDLKPQT FRNAYDIPRR BACU019583/1-828 FQQLLQGISE DVPHRLLDLN MKEYTGFQVA LLNKDLKPQT FRNAYDIPRR 551 600 ENSP00000310260/1-887 NLLDHLTRMR SNLLKSTRRF LKGQDEDQVH SVPIAQMGNY QEYLKQVPSP ENSBTAP00000003868/1-879 NLLDHLTRMR SNLLKSTRRF LKGQDEDQVH SVPIAQMGNY QEYLKQVPSP ENSTTRP00000009008/1-888 NLLDHLTRMR SNLLKSTRRF LKGQDEDQVH SVPIAQMGNY QEYLKQVPSP bmy_09776T0/1-728 NLLDHLTRMR SNLLKSTRRF LKGQDEDQVH SVPIAQMGNY QEYLKQVPSP BACU019583/1-828 NLLDHLTRMR SNLLKSTRRF LKGQDEDQVH SVPIAQMGNY QEYLKQVPSP 601 650 ENSP00000310260/1-887 LRELDPDQPR RLHTFGNPFK LDKKGMMIDE ADEFVAGPQN KHKRPGEPNM ENSBTAP00000003868/1-879 LRELDPDQPR RLHTFGNPFK LDKKGMMIDE ADEFVAGPQN KHKRPGEPNM ENSTTRP00000009008/1-888 LRELDPDQPR RLHTFGNPFK LDKKGMMIDE ADEFVAGPQN KHKRPGEPNM bmy_09776T0/1-728 LRELDPDQPR RLHTFGNPFK LDKKGMMIDE ADEFVAGPQN KHKRPGEPNM BACU019583/1-828 LRELDPDQPR RLHTFGNPFK LDKKGMMIDE ADEFVAGPQN KHKRPGEPNM 651 700 ENSP00000310260/1-887 QGIPKRRRCM SPLLRGRQQN PVVNNHIGGK GPPAPTTQAQ PDLIKPLPLH ENSBTAP00000003868/1-879 QGVPKRRRCM SPLLRGRQQS PVVNNHIGGK GPPAPMTQAQ PDLIKPLPLH ENSTTRP00000009008/1-888 QGIPKRRRCM SPLLRGRQQN PVVNNHIGGK GPPVPMTQAQ PDLLKPLPLH bmy_09776T0/1-728 QGIPKRRRCM SPLLRGRQQN PVVNNHIGGK GPPVPMTQAQ PDLLKPLPLH BACU019583/1-828 QGIPKRRRCM SPLLRGRQQN PVVNNHIGGK GPPVPMTQAQ PDLLKPLPLH 701 750 ENSP00000310260/1-887 KISETTNDSI IHDVVENHVA DQLSSDITPN AMDTEFSA-S SPASLLERPT ENSBTAP00000003868/1-879 KISEATNDST MDDVVENHVA DQLSSDTTPN AMEAEFSG-S SPANLLERPT ENSTTRP00000009008/1-888 KISEATNDST IDDVVENHVA DQLSSDITPN AMESEFSASS SPASLLERPT bmy_09776T0/1-728 KISEATNDST VDDVVENHVA DQLSSDITPN AMESEFSASS SPANLLERPT BACU019583/1-828 KISEATNDST VDDVVENHVA DQLSSDITPN AMESEFSTSS SPANLLERPT 751 800 ENSP00000310260/1-887 NHMEALGHDH LGTNDLTVGG FLENHEEPRD KEQCAEENIP ASSLNKGKKL ENSBTAP00000003868/1-879 NHTEALGHDH LGTNDLTVGG FLENHEEPRD KEQCPEENIP ASSLNRGKKL ENSTTRP00000009008/1-888 NHTEALSHDH LGTNDLTVGG FLENHEEPRD KEQCPEENLP ASSLNKGKKL bmy_09776T0/1-728 NHTEALGHDH LGTNDLNVGG FLENHEEPRD KEQCPEENIP ASSLNKGKKL BACU019583/1-828 NHTEALGHDH LGTNDLNVGG FLENHEEPRD KEQCPEENIP ASSLNKGKKL 801 850 ENSP00000310260/1-887 MHCRSHEEVN TELKAQIMKE IRKPGRKYER IFTLLKHVQG SLQTRLIFLQ ENSBTAP00000003868/1-879 MHCRSHEEVN TELKAQIMKE IRKPGRKYER IFTLLKHVQG SLQTRLIFLQ ENSTTRP00000009008/1-888 MHCRSHEEVN TELKAQIMKE IRKPGRKYER IFTLLKHVQG SLQTRLIFLQ bmy_09776T0/1-728 MHCRSHEEVN TELKAQIMKE IRKPGRKYER IFTLLKHVQG SLQTRLIFLQ BACU019583/1-828 MHCRSHEEVN TELKAQIMKE IRKPGRKYER IFTLLKHVQG SLQTRLIFLQ 851 900 ENSP00000310260/1-887 NVIKEASRFK KRMLIEQLEN FLDEIHRRAN QINHINSN ENSBTAP00000003868/1-879 NVIKEASRFK KRMLIEQLEN FLDEIHRRAN QINHINSN ENSTTRP00000009008/1-888 NVIKEASRFK KRMLIEQLEN FLDEIHRRAN QINHINSN bmy_09776T0/1-728 NVIKEASRFK KRMLIEQLEN FLDEIHRRAN QINHINSN BACU019583/1-828 NVIKEASRFK KRMLIEQLEN FLDEIHRRAN QINHINSN