KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:22 2014 Check: 00 .. Name: ENSP00000250056/1-248 Len: 330 Check: 242 Weight: 1.00 Name: ENSBTAP00000003882/1-239 Len: 330 Check: 2561 Weight: 1.00 Name: ENSTTRP00000011420/1-247 Len: 330 Check: 8566 Weight: 1.00 Name: bmy_08621T0/1-229 Len: 330 Check: 3145 Weight: 1.00 Name: BACU006934/1-330 Len: 330 Check: 9558 Weight: 1.00 // 1 50 ENSP00000250056/1-248 MASRWQNMGT SVRRRSLQHQ EQLEDSKELQ PVVSHQETSV GALGSLCRQF ENSBTAP00000003882/1-239 MASRWPAVGA SLRRRSLQNQ ERLEESEALQ PVASHPDTSS GALGSLCRQF ENSTTRP00000011420/1-247 MASRWPAVGA SMRRRSLQNQ GQLEESEALQ PAVGHPDTSS GALDSLCRQF bmy_08621T0/1-229 MASRWPAVGT SMRRRSLQSQ EQLEESEALQ PAVGHPDTSS GALDSLCRQF BACU006934/1-330 MASRWPAVGT SMRRRSLQSQ EQLEESEALQ PAVGHPDSSS GALDSLCRQF 51 100 ENSP00000250056/1-248 QRRLPLRAVN LNLRAGPSWK RLETPEPGQQ GLQAAARSAK SALGAVSQRI ENSBTAP00000003882/1-239 QRRLPLRAVS LNLGVGPSWK RLETPEPGQQ GLQAAARSAK STLGAMSQRI ENSTTRP00000011420/1-247 QRRLPLRAVS LNLRAGPSWK PLETPQPGQQ GLQAAARSAK NALGAVSQRI bmy_08621T0/1-229 QRRLPLRAVS LNLRAGPSWK RLETPEPGQP GLQAAARSAK SALGAVSQRI BACU006934/1-330 QRRLPLRAVS LNLRAGPSWK RLETPEPGQP GLQAAARSAK SALGAVSQRI 101 150 ENSP00000250056/1-248 QESCQSGTKW LVETQVKARR RKRGAQKGSG SPTHSLSQKS TRLSGAAPAH ENSBTAP00000003882/1-239 QESCQSGTKW LVETQVKARR RKRGAQKGSS PPAHSLSQRS TRLSVAAPAH ENSTTRP00000011420/1-247 QESCQSGTKW LVETQVKARR RKRGAQKGSG PPARSPSHRS TRLSVAAPAR bmy_08621T0/1-229 QESCQSGTKW LVETQVKARR RKRGAQKGSG PPARSLSQRS ARLSVAAPAR BACU006934/1-330 QESCQSGTKW LVETQVKARR RKRGAQKGSG PPARSLSQRG ARLSVAAPAR 151 200 ENSP00000250056/1-248 SAADPWEKEH HRLSVRMGSH AHPLRRSRRE AAFRSPYSST EPLCSPSESD ENSBTAP00000003882/1-239 STLGPWEKEY HRLSVQMSSR AHPWRRSRRE AAFRSPYSSA EPLCSPSESD ENSTTRP00000011420/1-247 STLDPRERAN RRLSTQMGPH AHPRRRSRRE AAFRSPYSSA EPLCSPSESD bmy_08621T0/1-229 PTLDPREREQ HRLSSPMGPH AHPRRRSRRE AAFRSPYSSA EALCSPSESD BACU006934/1-330 PALDPRGREQ QPLSSPTGPH AHPRRRSRRE AAFRSPYSSA EPLCSPSESD 201 250 ENSP00000250056/1-248 SDLEPVGAGI QHLQKLSQEL DEAIMAEERK QALS------ ---------- ENSBTAP00000003882/1-239 SDLEPVGAGI RHLQKVSQEL EEAIVAEDSG ---------- ---------- ENSTTRP00000011420/1-247 SDLEPVGAGI QHLQKLSQEL DEAIIAEERK QALA------ ---------- bmy_08621T0/1-229 SDLEPVGAGI QHLQKLSQEL DEAIIAEER- ---------- ---------- BACU006934/1-330 SDLEPVGAGI QHLQKLSQEL DEAIIAEERR GRIGVEVAMP YELVLDGEPR 251 300 ENSP00000250056/1-248 ---------- ---------- DRQGFILKDV YASP------ ---------- ENSBTAP00000003882/1-239 ---------- ---------- DMTVSLIRD- ---------- ---------- ENSTTRP00000011420/1-247 ---------- ---------- DHHAL-TPRV RASQ------ ---------- bmy_08621T0/1-229 ---------- ---------- ---------- ---------- ---------- BACU006934/1-330 RMKCERRDGP AANRQEAGPE RKLGVITPPQ QTCQQLWAQM RRWKWSRSWQ 301 350 ENSP00000250056/1-248 ---------- ---------- ---------- ENSBTAP00000003882/1-239 ---------- ---------- ---------- ENSTTRP00000011420/1-247 ---------- ---------- ---------- bmy_08621T0/1-229 ---------- ---------- ---------- BACU006934/1-330 AGEDTVPVES RGRGWEPGAV QPQRRIEFTG