KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:26 2014 Check: 00 .. Name: ENSP00000314193/1-830 Len: 832 Check: 5701 Weight: 1.00 Name: ENSBTAP00000003908/1-831 Len: 832 Check: 7930 Weight: 1.00 Name: bmy_08054T0/1-795 Len: 832 Check: 3533 Weight: 1.00 Name: BACU017032/1-596 Len: 832 Check: 7802 Weight: 1.00 Name: ENSTTRP00000009876/1-831 Len: 832 Check: 4214 Weight: 1.00 // 1 50 ENSP00000314193/1-830 MVEEENIRVV RCGGSELNFR RAVFSADSKY IFCVSGDFVK VYSTVTEECV ENSBTAP00000003908/1-831 MVEEEGIRVV RCGGSELNFR RAVFSADSKY IFCVSGDFIK VYSTATEECV bmy_08054T0/1-795 MVEEESLRVV RCGGSELNFR RAVFSVDSKY VFCVSGDFIK VYSTATEECV BACU017032/1-596 MVEEESLRVV RCGGSELNFR RAVFSVDSKV L--------- ---------- ENSTTRP00000009876/1-831 MVEEESLRVV RCGGSELNFR RAVFSADSXX XXXXXXXXXX XXXXXXXXXX 51 100 ENSP00000314193/1-830 HILHGHRNLV TGIQLNPNNH LQLYSCSLDG TIKLWDYIDG ILIKTFIVGC ENSBTAP00000003908/1-831 HILQGHRNLV TGIQLNPNNH LQLYSCSVDG TIKLWDYIDG ILIKTFRVGC bmy_08054T0/1-795 HILQGHRNLV TGIQLNPRNH LQLYSCSFDG TIKLWDYIDG ILIKIVIS-- BACU017032/1-596 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009876/1-831 XXXXXXXXXX XXXXXXXXXX XXLYSCSFDS TIKLWDYTDG ILIKTFIVGC 101 150 ENSP00000314193/1-830 KLHALFTLAQ AEDSVFVIVN KEKPDIFQLV SVKLPKSSSQ EVEAKELSFV ENSBTAP00000003908/1-831 ELHALFTLSH AEDSVFVTIN KEKPDVFQLA SVKLPKSSSQ EIEAKELSFV bmy_08054T0/1-795 -----WTFNC ----LWL--- ----DVFQLV SVKLPKSSSQ EIEAKELSFV BACU017032/1-596 ---------- ---TIFV--- ---------- ---------- -----NVIFS ENSTTRP00000009876/1-831 KLHALFTLDC AEDSVFVIIN KEKPDVFQLV SVKLPKSSSQ EIEAKELSFV 151 200 ENSP00000314193/1-830 LDYINQSPKC IAFGNEGVYV AAVREFYLSV YFFKKKTTSR FTLSSSRNKK ENSBTAP00000003908/1-831 LDYVNQSPKC IAFGNEGEYV AAVRDFYLSV YFFKKKTTTR FTLSSSRNKK bmy_08054T0/1-795 LDYINQSPKC IAFGNEGEYV AAVRDFYLSV YFFKKKTTSR FTLSSSRNKK BACU017032/1-596 LKY------- -----QGEYV AAVRDFYLSV YFFKKKTTSR ---------- ENSTTRP00000009876/1-831 LDYINQSPKC IAFGNEGEYV AAVRDFYLSV YFFKKKTTSR FTLSSSRNKK 201 250 ENSP00000314193/1-830 HAKNNFTCVA CHPTEDCIAS GHMDGKIRLW RNFYDDKKYT YTCLHWHHDM ENSBTAP00000003908/1-831 HARNNFTCVT CHPKEDCIAT GHKDGKIRLW RNFDDEKKYT YTCLHWHHDL bmy_08054T0/1-795 HAKNNFTCVA CHPKEDCIAT GHRDGKIRLW RNFDDEKKYT YTCLHWHHDL BACU017032/1-596 ---------- ---------- ---------- RNFDDEKKYT YTCLHWHHDL ENSTTRP00000009876/1-831 HAKNNFTCVA CHPKEDCIAT GHRDGKIRLW RNFDDEKKYT YTCLHWHHDL 251 300 ENSP00000314193/1-830 VMDLAFSVT- GTSLLSGGRE SVLVEWRDAT EKNKEFLPRL GATIEHISVS ENSBTAP00000003908/1-831 VMDLAFSVT- GSSLLSGGRE SVLVEWREAA EKNKEFLPRL GATIEHISVS bmy_08054T0/1-795 VMDLAFSVTE GSSLLSGGRE SVLVEWREAA EKNKEFLPRL GATIEHISVS BACU017032/1-596 VMDLAFSVT- ---------- ---------- ---------- ---------- ENSTTRP00000009876/1-831 VMDLAFSVT- GSSLLSGGRE SVLVEWREAA EKNKEFLPRL GATIEHISVS 301 350 ENSP00000314193/1-830 PAGDLFCTSH SDNKIIIIHR NLEASAVIQG LVKDRSIFTG LMIDPRTKAL ENSBTAP00000003908/1-831 PAGDLFCTSH SDNKITIIHR NLEASAVIQG LVKDRSIFTG LMIDPRTKAL bmy_08054T0/1-795 PAGDLFCTSH SDNKMIIIHR NLEASAVIQG LVKDRNIFTG LMIDPRTKAL BACU017032/1-596 ---------- ---------- ---------- ---DRNIFTG LMIDPRTKAL ENSTTRP00000009876/1-831 PAGDLFCTSH SDNKMIIIHR NLEASAVIQG LVKDRNIFTG LMIDPRTKAL 351 400 ENSP00000314193/1-830 VLNGKPGHLQ FYSLQSDKQL YNLDIIQQEY INDYGLIQIE LTKAAFGCFG ENSBTAP00000003908/1-831 VLNGKPGHLQ FYSLQSDKQL YNLDIIQQEY INDSGLIQIE LTKAAFGCYG bmy_08054T0/1-795 VLNGKPGHLQ FYSLQSDKQL YNLDIIQQEY INDYGLIQIE LTKAAFGCYG BACU017032/1-596 VLNGKPGHLQ FYSLQSDKQL YNLDIIQQEY INDYGLIQIE LTKAAFGCYG ENSTTRP00000009876/1-831 VLNGKPGHLQ FYSLQSDKQL YNLDIIQQEY INDYGLIQIE LTKAAFGCYG 401 450 ENSP00000314193/1-830 NWLATVEQRQ EKETELELQM KLWMYNKKTQ GFILNTKINM PHEDCITALC ENSBTAP00000003908/1-831 NWLATVEQRQ EKETELELQM KLWMYNKKTQ GFVLNTKVNM PHEDHITALC bmy_08054T0/1-795 NWLATVEQRQ EKETELELQM KLWTYNKKTQ GFVLNTKVNM PHEDHITALC BACU017032/1-596 NWLATVEQRQ EKETELELQM KLWTYNKKTQ GFVLNTKVNM PHEDHITALC ENSTTRP00000009876/1-831 NWLATVEQRQ EKETELELQM KLWTYNKKTQ GFVLNTKVNM PHEDHITALC 451 500 ENSP00000314193/1-830 FCNAEKSEQP TLVTASKDGY FKVWILTDDS DIYKKAVGWT CDFVGSYHKY ENSBTAP00000003908/1-831 FCNAEKSESS TLVTASKDGH FKVWILTDDS DIYKKAVGWT CDFVGSYHKY bmy_08054T0/1-795 FCNAEKSENP TLVTTSKDGH FKVWILTDDS DIYKKAVGWT CDFVGSYHKY BACU017032/1-596 FCNAEKSENP TLVTTSKDGH FKVWILTDDS DIYKKAVGWT CDFVGSYHKY ENSTTRP00000009876/1-831 FCNAEKSENP TLVTTSKDGH FKVWILTDDS DIYKKAVGWT CDFVGSYHKY 501 550 ENSP00000314193/1-830 QATNCCFSED GSLLAVSFEE IVTIWDSVTW ELKCTFCQRA GKIRHLCFGR ENSBTAP00000003908/1-831 QATNCCFSED GSLLAVSFEE IVTIWDSETW ELKCTFCQRA GKIRHLCFGR bmy_08054T0/1-795 QATNCCFSED GSLLAVSFEE IVTIWDSETW ELKCTFCQRA GKIRHLCFGR BACU017032/1-596 QATNCCFSED GSLLAVSFEE IVTIWDSETW ELKCTFCQRA GKIRHLCFGR ENSTTRP00000009876/1-831 QATNCCFSED GSLLAVSFEE IVTIWDSETW ELKCTFCQRA GKIRHLCFGR 551 600 ENSP00000314193/1-830 LTCSKYLLGA TENGILCCWN LLSCALEWNA KLNVRVMEPD PNSENIAAIS ENSBTAP00000003908/1-831 LTCSKYLLGV TENGILCCWN LLSCALEWST KLNVRVMEPD PNSENIAAIA bmy_08054T0/1-795 LTCSKYLLGA TENGILCCWN LLSCA----C KMLLSVW--- ---------- BACU017032/1-596 LTCSKYLLGA TENGILCCWN LLSCALEWSA KLNMRVLEPD PNSENIAAIS ENSTTRP00000009876/1-831 LTCSKYLLGA TENGILCCWN LLSCALEWSA KLNVRVMEPD PNSENIAAVS 601 650 ENSP00000314193/1-830 QSSVGSDLFV FKPSEPRPLY IQKGISREKV QWGVFVPRDV PESFTSEAYQ ENSBTAP00000003908/1-831 QSSVGSDLFV FKPSEPRPLY IQKNICREEV LWGVFVPRDV PESFTSEAYQ bmy_08054T0/1-795 --FFFSLVFV FRPSEPRPLY IQKNISREEV QWGVFVPRDV PESFTSEAYQ BACU017032/1-596 QSSTGSDLFV FRPSEPRPLY IQKNISREEV QWGVFVPRDV PESFTSEAYQ ENSTTRP00000009876/1-831 QSSMGSDLFV FRPSEPRPLY IQKNISREEV QWGVFVPRDV PESFTSEAYQ 651 700 ENSP00000314193/1-830 WLNRSQFYFL TKSQSLLTFS TKSPEEKLTP TSKQLLAEES LPTTPFYFIL ENSBTAP00000003908/1-831 WLNRSQFYFL TKSQSLLTFS TQSPEEKLTP TSKQLLAEES LPTTPFYFLL bmy_08054T0/1-795 WLNRSQFYFL TKSQSLLTFS TQSPEEKLTP TSKQLLAEET LPTTPFYFIL BACU017032/1-596 WLNRSQFYFL TKSQSLLTFS TQSPEEKLTP TSKQLLAEET LPTTPFYFIL ENSTTRP00000009876/1-831 WLNRSQFYFL TKSQSLLTFS TQSPEEKLTP TSKQILAEET LPTTPFYFIL 701 750 ENSP00000314193/1-830 GKHR-QQQDE KLNETLENEL VQLPLTENIP AISELLHTPA HVLPSAAFLC ENSBTAP00000003908/1-831 GKHRKEQQND KLNEALENEL VQLPLTENIP AISELLRTPA HVLPSASFLC bmy_08054T0/1-795 GKHRQQQQDD KLNEALEDEL VQLPXTENIP AISELLHTPA HVLPSASFLC BACU017032/1-596 GKHRQQQQDD KLNEALEDEL VQLPLTENIP AISELLHTPA HVLPSASFLC ENSTTRP00000009876/1-831 GKHRQQQQDD KLNEALENEL IQLPLTENIP AISELLHTPA HVLPSASFLC 751 800 ENSP00000314193/1-830 SMFVNSLLLS KETKSAKEIP EDVDMEEEKE SEDSDEENDF TEKVQDTSNT ENSBTAP00000003908/1-831 SMFVNSLLLS KETKSAEEHP DDIDMVEEKE SDDSDEENNF TEKIQDTNNT bmy_08054T0/1-795 SMFVNSLLLS KETKSAEEIP DDVSMEEEKE SVDSDEENNF TEQVQDTNNT BACU017032/1-596 SMFINSLLLS KETKSAEEIP DDVSMEEEKE SVDSDEENNF TEQVQDTNNT ENSTTRP00000009876/1-831 SMFVNSLLLS KETKSAEEIP DDVSMEEEKE SVDSDEENNF TEEVQDTNNT 801 850 ENSP00000314193/1-830 GLGEDIIHQL SKSEEKELRK FRKIDYSWIA AL ENSBTAP00000003908/1-831 DLEEDIIYQL SKSEEKELKK FRKVDYSWIA AL bmy_08054T0/1-795 DLGKDIIHQL SKSEEKELRK FRRVDYSWIT AL BACU017032/1-596 DLGKDIIHQL SKSEEKELRK FRKVDYSWIT AL ENSTTRP00000009876/1-831 DLGKDIIHQL SKSEEKELRK FRKVDYSWMT AL