KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:22:27 2014 Check: 00 .. Name: ENSP00000342222/1-764 Len: 814 Check: 6637 Weight: 1.00 Name: ENSBTAP00000003922/1-753 Len: 814 Check: 411 Weight: 1.00 Name: bmy_10715T0/1-677 Len: 814 Check: 6262 Weight: 1.00 Name: BACU005237/1-807 Len: 814 Check: 5510 Weight: 1.00 // 1 50 ENSP00000342222/1-764 ---------- ---------- --MTSPSSSP VF-------- ---------- ENSBTAP00000003922/1-753 ---------- ---------- --MTTPSSSP AF-------- ---------- bmy_10715T0/1-677 ---------- ---------- --MASPSSPP AF-------- ---------- BACU005237/1-807 MTGLSTRCNV TCSGRSQLGT KQWQTKDWNP SVNSDIAQKI HEVLLGSLPS 51 100 ENSP00000342222/1-764 ------RLET LDGGQEDGSE ADRGKLDFGS GLPPMESQFQ GEDRKFAPQI ENSBTAP00000003922/1-753 ------RLET SDGGDEDGAQ GDTGNGGRSS EPPPMESRFQ SEDRNSSPQI bmy_10715T0/1-677 ------RLET SDGGQESGAQ VDRGKLGGGA RPPPMESPFQ GEDRNFSPQI BACU005237/1-807 NCCLQDRLET SDGGQESGAQ VDRGKLGSGA GPPPMESPFQ GEDRNFSPQI 101 150 ENSP00000342222/1-764 RVNLNYRKGT GASQPDPNRF DRDRLFNAVS RGVPEDLAGL PEYLSKTSKY ENSBTAP00000003922/1-753 RVNLNFRRAA GASQPDPNRF GRDRLFSAVA RGAPEDLAGL PEYLRRTSKY bmy_10715T0/1-677 KVNLSFRKAA GASQPDPNRF DRDRLFSVVA RGVPEDLVGL PEYLRRTSKY BACU005237/1-807 KVNLSFRKGA GASQPDPNRF DRDRLFSAVA RGVPEDLVGL PEYLRRTSKY 151 200 ENSP00000342222/1-764 LTDSEYTEGS TGKTCLMKAV LNLKDGVNAC ILPLLQIDRD SGNPQPLVNA ENSBTAP00000003922/1-753 LTDSEYREGS TGKTCLMKAL LNLRDGANAC IEPLLQIDRD SGNPHPLVNA bmy_10715T0/1-677 LTDSEYTEGS TGKTCLMKAV LNLRDGTNAC IEPLLQIDRD SGNPRPLVNA BACU005237/1-807 LTDSEYTEGS TGKTCLMKAV LNLRDGTNAC IESLLQIDRD SGNPRPLVNA 201 250 ENSP00000342222/1-764 QCTDDYYRGH SALHIAIEKR SLQCVKLLVE NGANVHARAC GRFFQK-GQG ENSBTAP00000003922/1-753 QCMDEYYRGH SALHIAIEKR SLVCVKLLVE NGADVHARAC GQFFQKRREE bmy_10715T0/1-677 QCTDEYYQGH SALHIAIEKR SLPC------ ---------- ---------- BACU005237/1-807 QCTDEYYQGH SALHIAIEKR SLPCVKLLVE NGADVHARAC GQFFRKKSQE 251 300 ENSP00000342222/1-764 TCFYFGELPL SLAACTKQWD VVSYLLENPH QPASLQATDS QGNTVLHALV ENSBTAP00000003922/1-753 TCFYFGELPL SLAACTQQWD VVTYLLKNTH QPASLQATDS LGNTVLHALV bmy_10715T0/1-677 ------EMPL SLAACTKQWD VVTYLLENPH QPASLQAADS LGNTALHALV BACU005237/1-807 TCFYFGEMPL SLAACTKQWD VVTYLLENPH QPASLQAADS LGNTALHALV 301 350 ENSP00000342222/1-764 MISDNSAENI ALVTSMYDGL LQAGARLCPT VQLEDIRNLQ DLTPLKLAAK ENSBTAP00000003922/1-753 MIADNSPENS MLVTHMYDRL LQVGG----- LQLEDMTNLQ GLTPLKLAAK bmy_10715T0/1-677 MIADNSAENT ELVTRMYDGL LQAGARLCPA VQLEDIPNLQ GLTPLKLAAK BACU005237/1-807 MIADNSAENT ELVTRMYDGL LQAGARLCPT VQLEDIPNLQ GLTPLKLAAK 351 400 ENSP00000342222/1-764 EGKIEIFRHI LQREFSGLSH -LSRKFTEWC YGPVRVSLYD LASVDSCEEN ENSBTAP00000003922/1-753 EGKIEIFRHI LQRELPEPYQ SLSRKFTEWS YGPVRVSLYD LASVDSWEEN bmy_10715T0/1-677 EGKIEIFRHI LQREFLGPSQ SLSRKFTEWS YGPVRVSLYD LASVDSWEEN BACU005237/1-807 EGKIEIFRHI LQREFLGPSQ SLSRKFTEWS YGPVRVSLYD LASVDSCEEN 401 450 ENSP00000342222/1-764 SVLEIIAFHC KSPHRHRMVV LEPLNKLLQA KWDLLIPKFF LNFLCNLIYM ENSBTAP00000003922/1-753 SVLEIIAFHS RSPLRHRMVV LEPLNKLLKA KSNLLIPRFL FNFLCYLTYM bmy_10715T0/1-677 SVLEIIAFHC QSP------- ---------- ---------- ---------- BACU005237/1-807 SVLEIIAFHC QSPHRHRMVV LEPLNKLLQA KWNLLIPRFL FNFLCYLTYV 451 500 ENSP00000342222/1-764 FIFTAVAYHQ PTLKKQAAPH LKAEVGNSML LTGHILILLG GIYLLVGQLW ENSBTAP00000003922/1-753 LIFTAVTYYQ PALEKDFLP- LEVTAGNTML LLGHVLLLLG GVNLLMGQLW bmy_10715T0/1-677 ---------- -----DFLP- LEVTAGNSVL LLGHILILVV GANILMGQLW BACU005237/1-807 SIFTAVTYHQ PPLDKDFLP- LEVTAGNSVL LLGHILILVV GANILMGQLW 501 550 ENSP00000342222/1-764 YFWRRHVFIW ISFIDSYFEI LFLFQALLTV VSQVLCFLAI EWYLPLLVSA ENSBTAP00000003922/1-753 YFWRRRLFIW ISFMDSYFEI LFLVQALLTV LSQVLRFLAV KGYLPLLVCS bmy_10715T0/1-677 YFWRRRLFIW ISFMDSYFEI LFLVQALLAV LSQVLCFLAI EWYLPLHVCS BACU005237/1-807 YFWRRRLFIW ISFMDSYFEI LFLVQALLPV LSQVLCFLAI EWYLPLHVCS 551 600 ENSP00000342222/1-764 LVLGWLNLLY YTRGFQHTGI YSVMIQKVIL RDLLRFLLIY LVFLFGFAVA ENSBTAP00000003922/1-753 LVLGWLNLLY YMRGFQYTGI YSVMIQKVIL RDLLRFLGVY LVFLFGFAVA bmy_10715T0/1-677 LALAWVNLLY YMRGLQHTGI YSVMIQKVIL RDLLRFLLVY LVFLFGFAVA BACU005237/1-807 LALGWVNLLY YMRGLQHTGI YSVMIQKVIL RDLLRFLLVY LVFLFGFAVA 601 650 ENSP00000342222/1-764 LVSLSQEAWR PEAPTGPNAT ESVQPMEGQE D-EGNGAQYR GILEASLELF ENSBTAP00000003922/1-753 LVSLSREPQD TGAPAGSNTT EVA----GKE DKE---APYR GILDTSLELF bmy_10715T0/1-677 LVSLSREAQD PGAPAGSNST EAA----GKG DKEGSTAPYE GVLDAALELF BACU005237/1-807 LVSLSREAQD PGAPAGSNST EAA----GEG DKEGSTAPYE GILDAALELF 651 700 ENSP00000342222/1-764 KFTIGMGELA FQEQLHFRGM VLLLLLAYVL LTYILLLNML IALMSETVNS ENSBTAP00000003922/1-753 KFTIGMGELA FQDQLHFRGV VLLLLLAYVL LTYVLLLNML IALMSETVNS bmy_10715T0/1-677 KFTVGMGELA FQDRLRFRGA VLLLLLAYVL LTYVLLLNML IALMNETVSS BACU005237/1-807 KFTVGMGELA FQDRLRFRGA VLLLLLAYVL LTYVLLLNML IALMNETVSS 701 750 ENSP00000342222/1-764 VATDSWSIWK LQKAISVLEM ENGYWWCRKK -QRAGVMLTV GTKPDGSPDE ENSBTAP00000003922/1-753 VATDSWSIWK LQKAISVLEM EKGYWWCRRK QQRAGVKLTV GSRPDGSPDE bmy_10715T0/1-677 VASDSWSIWK LQKAISVLEM ENGYWWCRRK KQRAGVRLTV GTRPDGRPDE BACU005237/1-807 VASDSWSIWK LQKAISVLEM ENGYWWCRRK KQRAGVRLTV GTRPDGRPDE 751 800 ENSP00000342222/1-764 RWCFRVEEVN WASWEQTLPT LCEDPSGAGV PRTLENPVLA SPPKEDEDGA ENSBTAP00000003922/1-753 RWCFRVEEVN WAAWEQTLPT VFEEPSGRGG PGAITSPALA S--QSSQDSA bmy_10715T0/1-677 RWCFRVEEVN WAAWEQTLPT VREEPSGPGG PGALKNPALA S--QSSQDSA BACU005237/1-807 RWCFRVEEVN WAAWEQTLPT VREEPAGPGG PGALKSPALA S--QSSQDSA 801 850 ENSP00000342222/1-764 SEENYVPVQL LQSN ENSBTAP00000003922/1-753 VEEDHVPLQP LESH bmy_10715T0/1-677 VEEDHVPLQL LESH BACU005237/1-807 VEEDHVPLQL LESH