KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:27 2014 Check: 00 .. Name: ENSTTRP00000010648/1-454 Len: 547 Check: 2445 Weight: 1.00 Name: ENSBTAP00000003923/1-339 Len: 547 Check: 1246 Weight: 1.00 Name: ENSP00000309116/1-465 Len: 547 Check: 4225 Weight: 1.00 Name: bmy_09431T0/1-413 Len: 547 Check: 9238 Weight: 1.00 Name: BACU009791/1-461 Len: 547 Check: 4998 Weight: 1.00 // 1 50 ENSTTRP00000010648/1-454 VVKKAQHLGH SQRAGPRPPQ GQRREAADPW WWQQ------ -QLGRAWVAA ENSBTAP00000003923/1-339 ---------- ---------- ---------- ---------- ---------- ENSP00000309116/1-465 MVGKAWPLTH SQGTGPWAPE GHRREAADPW WQRQQAQEGR MQLGCAWVAA bmy_09431T0/1-413 ---------- ---------- ---------- ---------- ---------- BACU009791/1-461 ----MTQLPP DQAPAKKHVR LQERRGSNVA LMLDVRSLGA VEPICSVRTP 51 100 ENSTTRP00000010648/1-454 RRGGGRKLAS -SLPSPQRQT NRQTDSWREA W--GQLLHQR SWPSEPPLGP ENSBTAP00000003923/1-339 ---------- ---------- ---------- ---------- ---------- ENSP00000309116/1-465 RRGGGRKLAS WSLLSPQRQT DRQTDSWQEA AWGPQLLQQT SWLSEPPLGP bmy_09431T0/1-413 ---------- ---------- ---------- ---------- ---------- BACU009791/1-461 QEVTLHFLRT AGHPLTRRAL QHQPPSPKQL --------EE EFLKIPSNFV 101 150 ENSTTRP00000010648/1-454 APRPSMVQAR GGHSRAQPP- -------ATP LRAAMTQLPP DQAPAKKHVR ENSBTAP00000003923/1-339 ---------- ---------- ---------- ----MTQPPP DQAPAKKHVR ENSP00000309116/1-465 APHLSMVQAH GGRSRAQPL- -------TLS LGAAMTQPPP EKTPAKKHVR bmy_09431T0/1-413 ---------- ---------- ---------- ----MTQRPP DQAPAKKHVR BACU009791/1-461 SPEDLDIPGH ASKDRYKTIL PKHSRQPPVP LRAAMTQLPP DQAPAKKHVR 151 200 ENSTTRP00000010648/1-454 LQERRGSNVA LMLDVRSLGT VEPICSVRTP QEVTLHFLRT AGRPLTRRAL ENSBTAP00000003923/1-339 LQERRGSNVA LMLDVRSLGA VEPICSVRTP QEVTLHFLRT AGRPLSRQAL ENSP00000309116/1-465 LQERRGSNVA LMLDVRSLGA VEPICSVNTP REVTLHFLRT AGHPLTRWAL bmy_09431T0/1-413 LQERRGSNVA LMLDVRSLGA VEPICSVRTP QEVTLHFLRT AGHPLTRRAL BACU009791/1-461 LQERRGSNVA LMLDVRSLGA VEPICSVRTP QEVTLHFLRT AGHPLTRRAL 201 250 ENSTTRP00000010648/1-454 QHQPPSPKQL EEEFLKIPSN FVSPEDLDIP GHASKDRYKT ILPNPQSRVC ENSBTAP00000003923/1-339 QHRPPSPTQL EEEFLRIPSN FVSPEDLDIP GHASKDRYKT ILPNPQSRVC ENSP00000309116/1-465 QRQPPSPKQL EEEFLKIPSN FVSPEDLDIP GHASKDRYKT ILPNPQSRVC bmy_09431T0/1-413 QHQPPSPKQL EEEFLKIPSN FVSPEDLDIP GHASKDRYKT ILPNPQSRVC BACU009791/1-461 QHQPPSPKQL EEEFLKIPSN FVSPEDLDIP GHASKDRYKT ILPNPQSRVC 251 300 ENSTTRP00000010648/1-454 LGRGQSREDG DYINANYIRG YGGKDKAYIA TQGPMPNTVS DFWEMVWQEE ENSBTAP00000003923/1-339 LGRAQSQEDG DYINANYIRG YDGQDKAYIA TQGPMPNTVS DFWEMVWQEE ENSP00000309116/1-465 LGRAQSQEDG DYINANYIRG YDGKEKVYIA TQGPMPNTVS DFWEMVWQEE bmy_09431T0/1-413 LGRAQSQEDG DYINANYIRG YGGKDKAYIA TQGPMPNTVS DFWEMVWQEE BACU009791/1-461 LGRAQSQEDG DYINANYIRG YGGKDKAYIA TQGPMPNTVS DFWEMVWQEE 301 350 ENSTTRP00000010648/1-454 TSLIVMLTQL REGKEXXXXX XXXXXXXXXX XXXXXQDVRE RPEYAVRQLT ENSBTAP00000003923/1-339 APLIIMLTQL REGKEKCVHY WPTEEETYGP FRIRVQDVRE RPEYTVRTLT ENSP00000309116/1-465 VSLIVMLTQL REGKEKCVHY WPTEEETYGP FQIRIQDMKE CPEYTVRQLT bmy_09431T0/1-413 TSLIVMLTQL REGKEKCVHY WPTEEETYGP FRIHVQDVRE SPEYTVRQLT BACU009791/1-461 TSLIVMLTQL REGKEKCVHY WPTEEETYGP FRIHVQDVRE SPEYTVRQLT 351 400 ENSTTRP00000010648/1-454 IQHQEERRSV KHILFSAWPD HQTPESAGPL LRLVAEVEDS PETAANTGPI ENSBTAP00000003923/1-339 IQHQEQRRAL KHILFSAWPD HQTPESAGPL LRLVAEVEDG PETGARSGPI ENSP00000309116/1-465 IQYQEERRSV KHILFSAWPD HQTPESAGPL LRLVAEVEES PETAAHPGPI bmy_09431T0/1-413 IQHQEECRSV KHILFSAWPD HQTPESAGPL LRLVAEVEDS PETAANTGPV BACU009791/1-461 IQHQEERRSV KHILFSAWPD HQTPESAGPL LRLVAEVEDS PETAASAGPV 401 450 ENSTTRP00000010648/1-454 VVHCSAGIGR TGCFIATRIG CQQLKALGEV DILGIVCQLR LD-------- ENSBTAP00000003923/1-339 VVHCSAGIGR TGCFIATRIG CQQLKARGEV DILSIVCQLR LD-------- ENSP00000309116/1-465 VVHCSAGIGR TGCFIATRIG CQQLKARGEV DILGIVCQLR LD-------- bmy_09431T0/1-413 VVHCSAGIGR TGCFIATRIG CQQLKALGEV DILGIVCQLR LDSLGTQGLV BACU009791/1-461 VVHCSAGIGR TGCFIATRIG CQQLKALGEV DILGIVCQLR LD-------- 451 500 ENSTTRP00000010648/1-454 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003923/1-339 ---------- ---------- ---------- ---------- ---------- ENSP00000309116/1-465 ---------- ---------- ---------- ---------- ---------- bmy_09431T0/1-413 LRQELRGQRR PLPAWAPPTP HPGLGRAQRE ESAAERMHLE GGADRPSGRS BACU009791/1-461 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000010648/1-454 ---------- ------RGGM I-TAEQYQFL HHTLALYAAQ LPEEPSP ENSBTAP00000003923/1-339 ---------- ------RGGM IQTAEQYQFL HHTLALFAAQ LPEEPSP ENSP00000309116/1-465 ---------- ------RGGM IQTAEQYQFL HHTLALYAGQ LPEEPSP bmy_09431T0/1-413 GSPLRTAVHG LRTSPRRGGM IQTAEQYRFL HHTLALYAAQ LPEEPSP BACU009791/1-461 ---------- ------RGGM IQTAEQYQFL HHTLALYAAQ LPEEPNP