KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:28 2014 Check: 00 .. Name: ENSP00000275560/1-575 Len: 668 Check: 9656 Weight: 1.00 Name: ENSBTAP00000003928/1-583 Len: 668 Check: 3731 Weight: 1.00 Name: ENSTTRP00000014068/1-571 Len: 668 Check: 2664 Weight: 1.00 Name: bmy_17492T0/1-361 Len: 668 Check: 1612 Weight: 1.00 Name: BACU012040/1-566 Len: 668 Check: 4505 Weight: 1.00 // 1 50 ENSP00000275560/1-575 ---------- -MHKEAEMLI GPQLDEKRWG WRLGDGSAAP PFLPQALSFL ENSBTAP00000003928/1-583 MGPLERPPIG WTHKEAEMHT GPQPDERSRG RGSGDRSTAP PPLPPALSFL ENSTTRP00000014068/1-571 ---------- -TRKDTEMQV GPQPDEKSRG WRLGDRNAAP SPLTPVLSFL bmy_17492T0/1-361 ---------- ---------- ---------- MHSGSCYQVS KP-------- BACU012040/1-566 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000275560/1-575 LLLPLASALQ PTPLPFQELR LVGGPSRCRG RLEVMHGGSW GSVCDDDWDV ENSBTAP00000003928/1-583 LLLPLAGALQ PTSLPFPELR LVGGPSRCRG RLEVLHGGSW GSVCDDDWDV ENSTTRP00000014068/1-571 LLLPLASALQ PTSLPFPELR LVGGPSRCRG RLEV-HGGSW GSVCDDDWDV bmy_17492T0/1-361 ---------- ------PELR LVGGPSRCRG RLEVLHGGSW GSVCDDDWDV BACU012040/1-566 ---------- ------MELR LVGGPSRCRG RLEVLHGGSW GSVCDDDWDV 101 150 ENSP00000275560/1-575 VDANVVCRQL GCGLALPVPR PLAFGQGRGP ILLDNVECRG QEAALSECGS ENSBTAP00000003928/1-583 VDANVVCRQL GCGLALPVPR PLAFGQGRGP ILLDNVECRG QEAALSECGS ENSTTRP00000014068/1-571 VDANVVCRQL GCGLALPVPR PLAFGQGRGP ILLDNVECRG QEAALSECGS bmy_17492T0/1-361 VDANVVCRQL GCGLALPVPR PLAFGQGRGP ILLDNVECRG QEAALSECGS BACU012040/1-566 VDANVVCRQL GCGLALPVPR PLAFGQGRGP ILLDNVECHG QEAALSECGS 151 200 ENSP00000275560/1-575 RGWGVHNCFH YE-------- --DVAVLCDE FLPTQPPTRK MLTSRAPPTT ENSBTAP00000003928/1-583 RGWGVHNCFH YE-------- --DVAVLCDE FLPTQPPTRR VLTSREPPTT ENSTTRP00000014068/1-571 RGWGVHNCFH YE-------- --DVAVLCDE FLPTQPPTRK VLTSRAPPTT bmy_17492T0/1-361 RGWGVHNCFH YEDVAVLCDG EQDVAVLCDE FLPTQPPTRK VLTSRAPPTT BACU012040/1-566 RGWGVHNCFH YE-------- --DVAVLCDE FLPTQPPARK VLTSRAPPTT 201 250 ENSP00000275560/1-575 LPNGKSEGSV RLVGGANLCQ GRVEILHSGL WGTVCDDDWG LPDAAVVCRQ ENSBTAP00000003928/1-583 PQNGKGEGSV RLVGGAGPCQ GRVEILHGGL WGTVCDDDWG LPDAAVVCRQ ENSTTRP00000014068/1-571 PQNGKGEGSV RLVGGAGPCQ GRVEILHGGL WGTVCDDDWG LPDATVVCRQ bmy_17492T0/1-361 PQNGKGEGSV RLVGGAGPCQ GRVEILHGGL WGTVCDDDWG LPDATVVCRQ BACU012040/1-566 PQNGKGEGSV RLVGGAGPCQ GRVEILHGGL WGTVCDDDWG LPDATVVCRQ 251 300 ENSP00000275560/1-575 LGCGAAMAAT TNAFFGYGTG HILLDNVHCE GGEPRLAACQ SLGWGVHNCG ENSBTAP00000003928/1-583 LGCGAALAAT TNAFFGYGTG HILLDNVHCE GGEPRLAACL SLGWGVHNCG ENSTTRP00000014068/1-571 LGCGAALAAT TNAFFGYGTG HILLDNVHCE GGEPRLAACL SLGWGVHNCG bmy_17492T0/1-361 LGCGAALAAT TNAFFGYGTG HILLDNVHCE GGETRLAACL SLGWGVHNCG BACU012040/1-566 LGCGAALAAT TNAFFGYGTG HILLDNVHCE GGETRLAACL SLGWGVHNCG 301 350 ENSP00000275560/1-575 HHEDAGALCA GLGPPTLTAL PSSATR---- ---------- ---------- ENSBTAP00000003928/1-583 HHEDAGALCA VLGHSTLTAL PPSATR---- ---------- ---------- ENSTTRP00000014068/1-571 HHEDAGALCA XXXXXXXXXX XXXXXX---- ---------- ---------- bmy_17492T0/1-361 HHEDAGALCA ---------- ---------- ---------- ---------- BACU012040/1-566 HHEDAGALCA ARKVLTSRAP PTTPQNGKGE GSVRLVGGAG PCQGRVEILH 351 400 ENSP00000275560/1-575 ---------E DWAWQTDPSA T---GVGPQP SRETALL--- ---------- ENSBTAP00000003928/1-583 ---------V DWAWHTEPEA T---GVGALP SREPARL--- ---------- ENSTTRP00000014068/1-571 ---------X XXXXXXXXXX T---GVGALP SREPALF--- ---------- bmy_17492T0/1-361 ---------- ---------- ---------- ---------- ---------- BACU012040/1-566 GGLWGTVCDD DWGLPDATVV CRQLGCGAAL AATTNAFFGY GTGHILLDNV 401 450 ENSP00000275560/1-575 ---------- --TTAAWAAG K--------- --KSGRLRLV GGPGPCRGRV ENSBTAP00000003928/1-583 ---------- --TTAAWAAG K--------- --KSGRLRLV GGPGPCRGRV ENSTTRP00000014068/1-571 ---------- --TTAAWAAG K--------- --KSGRLRLV GGPSPCRGRV bmy_17492T0/1-361 ---------- ---------- ---------- ---------- ---------- BACU012040/1-566 HCEGGETRLA ACLSLGWGVH NCGHHEDAGA LCAGGRLRLV GGPSPCRGRV 451 500 ENSP00000275560/1-575 EVLHAGGWGT VCDDDWDFAD ARVACREAGC GPALGATGLG HFGYGRGPVL ENSBTAP00000003928/1-583 EVLYAGGWGT VCDDDWDFAD ARVACREAGC GPALGATGLG HFGYGRGPVL ENSTTRP00000014068/1-571 EVLYAGGWGT VCDDDWDFAD ARVACREAGC GPALGATGLG HFGYGRGPVL bmy_17492T0/1-361 ---------- ---------- ---------- ---------- ---------- BACU012040/1-566 EVLYAGGWGT VCDDDWDFAD ARVACREAGC GPALGATGLG HFGYGRGPVL 501 550 ENSP00000275560/1-575 LDNVGCAGTE ARLSDCFHLG WGQHNCGHHE DAGALCAGPE ELGLQVQQDG ENSBTAP00000003928/1-583 LDNVGCAGTE ARLSDCFHLG WGQHNCGHHE DAGAICSGPD EL---VQQDG ENSTTRP00000014068/1-571 LDNVGCAGTE ARLSDCFHLG WGQHNCGHHE DAGALCSGPD EL---VQQDG bmy_17492T0/1-361 ---------- ---------- ---------- ---------- ---------- BACU012040/1-566 LDNVGCAGTE ARLSDCFHLG WGQHNCGHHE DAGALCSG-- ---------- 551 600 ENSP00000275560/1-575 SETTRVPTPR PRDGHLRLVN GAHRCEGRVE LYLGQRWGTV CDDAWDLRAA ENSBTAP00000003928/1-583 AETTRVPTPR PRDGHLRLAN GAHRCEGRVE LFLGQRWGTV CDDAWDLRAA ENSTTRP00000014068/1-571 AETTQVPTPR PRDGHLRLAN GAHRCEGRVE LFLGQQWGTV CDDAWDMRAA bmy_17492T0/1-361 ---------- ---GHLRLAN GAHRCEGRVE LFLGQQWGTV CDDAWDLRAA BACU012040/1-566 ---------- ----HLRLAN GAHRCEGRVE LFLGQQWGTV CDDAWDLRAA 601 650 ENSP00000275560/1-575 GVLCRQLGCG QALAAPGEAH FGPGRGPILL DNVKCRGEES ALLLCSHIRW ENSBTAP00000003928/1-583 GVLCRQLGCG QALEAPGEAH FGPGRGPILL DNVKCRGDES ALLLCSHIRW ENSTTRP00000014068/1-571 GVLCHQLGCG QALAAPGEAH FGPGRGPILL DNVKCRGDES ALLLCSHIRW bmy_17492T0/1-361 GVLCRQLGCG QALAAPGEAH FGPGRGPILL DNVKCRGDES ALLLCSHIRW BACU012040/1-566 GVLCRQLGCG QALAAPGEAH FGPGRGPILL DNVKCRGDES TLLLCSHIRW 651 700 ENSP00000275560/1-575 DAHNCDHSED ASVLCQPS ENSBTAP00000003928/1-583 DAHNCDHSED ASVLCQPE ENSTTRP00000014068/1-571 DAHNCDHSED ASVLCQPS bmy_17492T0/1-361 DAHNCDHSED ASVLCQPS BACU012040/1-566 DAHNCDHSED ASVLCQPS