KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:31 2014 Check: 00 .. Name: ENSTTRP00000009365/1-652 Len: 652 Check: 8757 Weight: 1.00 Name: ENSP00000353463/1-633 Len: 652 Check: 3047 Weight: 1.00 Name: ENSBTAP00000003949/1-632 Len: 652 Check: 9349 Weight: 1.00 Name: bmy_02660T0/1-576 Len: 652 Check: 2679 Weight: 1.00 Name: BACU016630/1-502 Len: 652 Check: 2554 Weight: 1.00 // 1 50 ENSTTRP00000009365/1-652 TLPPWPAGRT TVPCPEAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353463/1-633 ---------- --------MT EEACRTRSQK RALERDPTED DVESKKIKME ENSBTAP00000003949/1-632 ---------- --------MT EEACRTRSQK RALERDPVED DVESKKIKME bmy_02660T0/1-576 ---------- ---------- ---------- ---------- AVSASESRHL BACU016630/1-502 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009365/1-652 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353463/1-633 RGLLASDLNT DGDMRVTPEP GAGPTQGLLR ATEATAMAMG RGEGLVGDGP ENSBTAP00000003949/1-632 RGVLASDLNA DGDTRVTPES GAGPAQGLLR GTEAT--AMG RGEGQVGDGP bmy_02660T0/1-576 RGV------- ---------- ---------- ---------G RGSRGRSGSN BACU016630/1-502 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009365/1-652 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000353463/1-633 VDMRTSHSDM KSERRPPSPD VIVLSDNEQP SSPRVNGLTT VALKETSTEA ENSBTAP00000003949/1-632 VDMRTTHSDM KSERRPPSPD VIVLSDNEQP ASPRVNGLTE EPPKETSAEA bmy_02660T0/1-576 LRLFLFHSDM KSERRAPSPD VIVLSDNEQP ASPRVNGLTE DALKETSTEA BACU016630/1-502 ---------M KSERRAPSPD VIVLSDNEQP ASPRVNGLTE DALKETSTEA 151 200 ENSTTRP00000009365/1-652 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXPAGS ENSP00000353463/1-633 LMKSSPEERE RMIKQLKEEL RLEEAKLVLL KKLRQSQIQK EATAQKPTGS ENSBTAP00000003949/1-632 LMKSSPEERE RMIKQLKEEL RLEEAKLVLL KKLRQSQIQK ETPTQKPAGS bmy_02660T0/1-576 LMKSSPEERE RMIKQLKEEL RLEEAKLVLL KKLRQSQIQK ETTTQKPAGS BACU016630/1-502 LMKSSPEERE RMIKQLKEEL RLEEAKLVLL KKLRQSQIQK ETTTQKPAGS 201 250 ENSTTRP00000009365/1-652 TGSSVTTPPP LVRGTQNIPS GKPSLQTSST RMPGSVIPPP LVRGGQQTSS ENSP00000353463/1-633 VGSTVTTPPP LVRGTQNIPA GKPSLQTSSA RMPGSVIPPP LVRGGQQASS ENSBTAP00000003949/1-632 TGSSVTTPPP LVRGTQNIPS GKPSLQTSSA RMPGSVIPPP LVRGGQQTSS bmy_02660T0/1-576 TGSSVTTPPP LVRGTQNIPS GKPSLQTSST RMPGSVIPPP LVRGGQQTSS BACU016630/1-502 TGSSVTTPPP LVRGTQNIPS SKPSLQTSST RMPGSVIPPP LVRGGQQTSS 251 300 ENSTTRP00000009365/1-652 KLGPQASSQV VMPPLVRGAQ QIHNIRQHSS TGPPPLLLAP RASVPSVQIQ ENSP00000353463/1-633 KLGPQASSQV VMPPLVRGAQ QIHSIRQHSS TGPPPLLLAP RASVPSVQIQ ENSBTAP00000003949/1-632 KLGPQANSQV VMPPLVRGAQ QIHNIRQHSS TGPPPLLLAP RASVPSVQIQ bmy_02660T0/1-576 KLGPQASSQV VMPPLVRGAQ QIHNIRQHSS TGPPPLLLAP RASVPSVQIQ BACU016630/1-502 KLGPQASSQV VMPPLVRGAQ ---------- --------GG RLKHPDQVIV 301 350 ENSTTRP00000009365/1-652 GQRIIQQGLI RVTNVPNTSL LVNIPQPSAA SLKGTTATSA QANSTPTSVA ENSP00000353463/1-633 GQRIIQQGLI RVANVPNTSL LVNIPQPTPA SLKGTTATSA QANSTPTSVA ENSBTAP00000003949/1-632 GQRIIQQGLI RVANVPNTSL LVNIPQPSPA SLKGTTATSA QANSTPSSVA bmy_02660T0/1-576 GQRIIQQGLI RVANVPNTSL LVNIPQPSPA SLKGTTATSA QANSTPTSVA BACU016630/1-502 SQK------- ---------- ------PSPA SLKGTTATSA QANSTPTSVT 351 400 ENSTTRP00000009365/1-652 SVVTSADSPA SRQAAAKLAL RKQLEKTLLE IPPPKPPAPE MNFLPSAANN ENSP00000353463/1-633 SVVTSAESPA SRQAAAKLAL RKQLEKTLLE IPPPKPPAPE MNFLPSAANN ENSBTAP00000003949/1-632 SVVTAADSPA SRQAAAKLAL RKQLEKTLLE IPPPKPPAPE MNFLPSAANN bmy_02660T0/1-576 SVVTSADSPA SRQAAAKLAL RKQLEKTLLE IPPPKPPAPE MNFLPSAANN BACU016630/1-502 SVVTSADSPA SRQAAAKLAL RKQLEKTLLE IPPPKPPAPE MNFLPSAANN 401 450 ENSTTRP00000009365/1-652 EFIYLVGLEE VVQNLLETQA GRMSAAVVLS REPYMCAQCK TDFTCRWREE ENSP00000353463/1-633 EFIYLVGLEE VVQNLLETQ- GRMSAATVLS REPYMCAQCK TDFTCRWREE ENSBTAP00000003949/1-632 EFIYLVGLEE VVQNLLETQA GRMSAAVVLS REPYMCAQCK TDFTCRWREE bmy_02660T0/1-576 EFIYLVGLEE VVQNLLETQA GRMSAAVVLS REPYMCAQCK TDFTCRWREE BACU016630/1-502 EFIYLVGLEE VVQNLLETQA GRMSAAVVLS REPYMCVQCK TDFTCRWREE 451 500 ENSTTRP00000009365/1-652 KGGAIMCENC MASNQKKALK VEHTSRLKAA FVKALQQEQE IEQRLLQQGA ENSP00000353463/1-633 KSGAIMCENC MTTNQKKALK VEHTSRLKAA FVKALQQEQE IEQRLLQQGT ENSBTAP00000003949/1-632 KGGTIMCENC MASNQKKALK VEHTSRLKAA FVKALQQEQE IEQRLLQQGA bmy_02660T0/1-576 KGGAIMCENC MASNQKKALK VEHTSRLKAA FVKALQQEQE IEQRLLQQGA BACU016630/1-502 KGGAIMCENC MASNQKKALK VEHTSRLKAA FVKALQQEQE IEQRLLQQGA 501 550 ENSTTRP00000009365/1-652 APAQAKAEPA AAPHPALKQV IKPRRKLAFR SGEARDWSNG AVLQASSQLS ENSP00000353463/1-633 APAQAKAEPT AAPHPVLKQV IKPRRKLAFR SGEARDWSNG AVLQASSQLS ENSBTAP00000003949/1-632 APAQAKAEPA SAPHPVLKQV IKPRRKLAFR SGEARDWSNG AVLQASSQLS bmy_02660T0/1-576 APAQAKAEPA AAPHPALKQV IKPRRKLAFR SGEARDWSNG AVLQASSQLS BACU016630/1-502 APAQAKAEPA AAPHPALKQV IKPRRKLAFR SGEARDWSNG AVLQASSQLS 551 600 ENSTTRP00000009365/1-652 RGSATTPRGI LHTFSQSPKL QNAASATALV SRTGRHSERA VSAGKGNATS ENSP00000353463/1-633 RGSATTPRGV LHTFSPSPKL QNSASATALV SRTGRHSERT VSAGKGSATS ENSBTAP00000003949/1-632 RGSATTPRGI LHTFSQSPKL QNAASATTLV GRTGRHSERA VSAGKGSTTS bmy_02660T0/1-576 RGSATTPRGI LHTFSQSPKL QNAASATALV SRTGRHSERA VSAGKGNATS BACU016630/1-502 RGSATTPRGI LHTFSQSPKL QNAASATALV SRTGRHSERA VSAGKGNATS 601 650 ENSTTRP00000009365/1-652 NWKKAPLSTG GALAFVSPSL TVHKTSSAVD RQREYLLDMI PPRSIPQSAT ENSP00000353463/1-633 NWKKTPLSTG GTLAFVSPSL AVHKSSSAVD RQREYLLDMI PPRSIPQSAT ENSBTAP00000003949/1-632 NWKKAPLSTG GALAFVSPSL AVHKTSSAVD RQREYLLDMI PPRSIPQSAT bmy_02660T0/1-576 NWKKAPLSTG GALAFVSPSL AVHKTSSAVD RQREYLLDMI PPRSIPQSAT BACU016630/1-502 NWKKAPLSTG GALAFVSPSL AVHKTSSAVD RQREYLLDMI PPRSIPQSAT 651 700 ENSTTRP00000009365/1-652 WK ENSP00000353463/1-633 WK ENSBTAP00000003949/1-632 WK bmy_02660T0/1-576 WK BACU016630/1-502 WK