KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:33 2014 Check: 00 .. Name: ENSTTRP00000007246/1-1492 Len: 1516 Check: 6470 Weight: 1.00 Name: ENSP00000262879/1-1494 Len: 1516 Check: 3908 Weight: 1.00 Name: ENSBTAP00000003956/1-1513 Len: 1516 Check: 632 Weight: 1.00 Name: bmy_16213T0/1-1129 Len: 1516 Check: 5581 Weight: 1.00 Name: BACU015501/1-1503 Len: 1516 Check: 5129 Weight: 1.00 // 1 50 ENSTTRP00000007246/1-1492 MYSEWRSLHL VIQNDQGHTS VLHSYPESVG REVANAVVHP LGQALGTLSA ENSP00000262879/1-1494 MYSEWRSLHL VIQNDQGHTS VLHSYPESVG REVANAVVRP LGQVLGTPSV ENSBTAP00000003956/1-1513 MYSEWRSLHL VIQNDQGHTS VLHSYPESVG REVANAVVHP LGQALGTPSV bmy_16213T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU015501/1-1503 MYSEWRSLHL VIQNDQGHTS VLHSYPESVG REVANAVVHP LGQALGTLSA 51 100 ENSTTRP00000007246/1-1492 AGGESLLKTD KEVKWTMEVI CYGLTLPLDG ETVKYCVDVY TDWIMALVLP ENSP00000262879/1-1494 AGSENLLKTD KEVKWTMEVI CYGLTLPLDG ETVKYCVDVY TDWIMALVLP ENSBTAP00000003956/1-1513 AGSESLLKTD KEVKWTMEVI CYGLTLPLDG ETVKYCVDVY TDWIMALVLP bmy_16213T0/1-1129 ---------- ---------- ---LALSFD- ---------- ---------- BACU015501/1-1503 AGSESLLKTD KEVKWTMEVI CYGLTLPLDG ETVKYCVDVY TDWIMALVLP 101 150 ENSTTRP00000007246/1-1492 KDSIPLPVIK EPNLYVQSIL KHLQNLFVPR QEQGSSQIRL CLQVLRAIQK ENSP00000262879/1-1494 KDSIPLPVIK EPNQYVQTIL KHLQNLFVPR QEQGSSQIRL CLQVLRAIQK ENSBTAP00000003956/1-1513 KDSIPLPVIK EPNLYVQSIL KHLQNLFVPR QEQGSSQTRL CLQVLKAIQK bmy_16213T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU015501/1-1503 KDSIPLPVIK EPNLYVQSIL KHLQNLFVPR QEQGSSQIRL CLQVLRAIQK 151 200 ENSTTRP00000007246/1-1492 LARESSIMAR ETWEVLLLFL LQINDILLAP PTVQGGIAEN LAEKLIGVLF ENSP00000262879/1-1494 LARESSLMAR ETWEVLLLFL LQINDILLAP PTVQGGIAEN LAEKLIGVLF ENSBTAP00000003956/1-1513 LARESSIMAR ETWEVLLLFL LQINDILLAP PTVQGGIAEN LAEKLIGVLF bmy_16213T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU015501/1-1503 LARESSIMAR ETWEVLLLFL LQINDILLAP PTVPGGIAEN LAEKLIGVLF 201 250 ENSTTRP00000007246/1-1492 EVWLLACTRC FPTPPYWKTA KEMVANWRHH PAVVEQWSKV ICALTSXXXX ENSP00000262879/1-1494 EVWLLACTRC FPTPPYWKTA KEMVANWRHH PAVVEQWSKV ICALTSRLLR ENSBTAP00000003956/1-1513 EVWLLACTRC FPTPPYWKTA KEMVANWRHH PAVVEQWSKV ICALTSRLLR bmy_16213T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU015501/1-1503 EVWLLACTRC FPTPPYWKTA KEMVANWRHH PAVVEQWSKV ICALTSRLLR 251 300 ENSTTRP00000007246/1-1492 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XNPVDLSNPA ENSP00000262879/1-1494 FTYGPSFPAF KVPDEDASLI PPEMDNECVA QTWFRFLHML SNPVDLSNPA ENSBTAP00000003956/1-1513 FTYGPSFPPF KVPDEDASLI PPEMDNECVA QTWFRFLHML SNPVDLSNPA bmy_16213T0/1-1129 ---------- ---------- ---------- ---------- SNPVDLSNPA BACU015501/1-1503 FTYGPSFPPF KVPDEDASLI PPEMDNECVA QTWFRFLHML SNPVDLSNPA 301 350 ENSTTRP00000007246/1-1492 IVSSTPKFQE QFLNVSGMPQ ELNQYPCLKH LPQIFFRAMR GISCLVDAFL ENSP00000262879/1-1494 IISSTPKFQE QFLNVSGMPQ ELNQYPCLKH LPQIFFRAMR GISCLVDAFL ENSBTAP00000003956/1-1513 IISSTPKFQE QFLNVSGMPQ ELNQYPCLKH LPQIFFRAMR GISCLVDAFL bmy_16213T0/1-1129 IISSTPKFQE QFLNVSGMPQ ELNQYPCLKH LPQIFFRAMR GISCLVDAFL BACU015501/1-1503 IISSTPKFQE QFLNVSGMPQ ELNQYPCLKH LPQIFFRAMR GISCLVDAFL 351 400 ENSTTRP00000007246/1-1492 GISRPRSDSA PPIPVIKLSM XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262879/1-1494 GISRPRSDSA PPTPVNRLSM PQSAAVSTTP PHNRRHRAVT VNKATMKTST ENSBTAP00000003956/1-1513 GISRPRSDSA PPTPVNRLSM PQSTAVNTTP PHNRRHRAVT VNKATMKTST bmy_16213T0/1-1129 GISRPRSDSA PPTPVNRLSM PQSTAVNTTP PHNRRHRAVT VNKATMKTST BACU015501/1-1503 GISRPRSDSA PPTPVNRLSM PQSTAVNTTP PHNRRHRAVT VNKATMKTST 401 450 ENSTTRP00000007246/1-1492 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262879/1-1494 VSTAHASKVQ HQTSSTSPLS SPNQTSSEPR PLPAPRRPKV NSILNLFGSW ENSBTAP00000003956/1-1513 VSTAHTSKVQ HQTSSTSPLS SPNQTSSEPR PLPAPRRPKV NSILNLFGSW bmy_16213T0/1-1129 VSTAHASKVQ HQTSSTSPLS SPNQTSSEPR PLPAPQRPKV NSILNLFGSW BACU015501/1-1503 VSTAHASKVQ HQTSSTSPLS SPNQTSSEPR PLPAPQRPKV NSILNLFGSW 451 500 ENSTTRP00000007246/1-1492 XXXXXXXXXX XXXXXXXXXX XXX------- -----ITTQA SMEFRRKGSQ ENSP00000262879/1-1494 LFDAAFVHCK LHNGINRDSS MTA------- -----ITTQA SMEFRRKGSQ ENSBTAP00000003956/1-1513 LFDAAFVHCK LHNGINRDSS MTASFIQILL SYKSSITTQA SMEFRRKGSQ bmy_16213T0/1-1129 LFDAAFVHCK LHNGINRDSS MTASFIQILL SYKSSITTQA SMEFRRKGSQ BACU015501/1-1503 LFDAAFVHCK LHNGINRDSS MTASFIQILL SYKSSITTQA SMEFRRKGSQ 501 550 ENSTTRP00000007246/1-1492 MSTDTMVSNP MFDASEFPDN YEAGRAEACG TLCRIFCSKK TGEEILPAYL ENSP00000262879/1-1494 MSTDTMVSNP MFDASEFPDN YEAGRAEACG TLCRIFCSKK TGEEILPAYL ENSBTAP00000003956/1-1513 MSTDTMVSNP MFDASEFPDN YEAGRAEACG TLCRIFCSKK TGEEILPAYL bmy_16213T0/1-1129 MSTDTMVSNP MFDASEFPDN YEAGRAEACG TLCRIFCSKK TGEEILPAYL BACU015501/1-1503 MSTDTMVSNP MFDASEFPDN YEAGRAEACG TLCRIFCSKK TGEEILPAYL 551 600 ENSTTRP00000007246/1-1492 SRFYMLLIQG LQINDYVCHP VLASVILNSP PLFCCDLKGI DVVVPYFISA ENSP00000262879/1-1494 SRFYMLLIQG LQINDYVCHP VLASVILNSP PLFCCDLKGI DVVVPYFISA ENSBTAP00000003956/1-1513 SRFYMLLIQG LQINDYVCHP VLASVILNSP PLFCCDLKGI DVVVPYFISA bmy_16213T0/1-1129 SRFYMLLIQG LQINDYVCHP VLASVILNSP PLFCCDLKGI DVVVPYFISA BACU015501/1-1503 SRFYMLLIQG LQINDYVCHP VLASVILNSP PLFCCDLKGI DVVVPYFISA 601 650 ENSTTRP00000007246/1-1492 LETILPD-RE LSKFKSYVNP TELRRSSINI LLSLLPLPHH FGTVKSEV-- ENSP00000262879/1-1494 LETILPD-RE LSKFKSYVNP TELRRSSINI LLSLLPLPHH FGTVKSEV-- ENSBTAP00000003956/1-1513 LETILPDSRE LSKFKSYVNP TELRRSSINI LLSLLPLPHH FGTVKSEVRF bmy_16213T0/1-1129 LETILPD-RE LSKFKSYVNP TELRRSSINI LLSLLPLPHH FGTVKSEV-- BACU015501/1-1503 LETILPD-RE LSKFKSYVNP TELRRSSINI LLSLLPLPHH FGTVKSEV-- 651 700 ENSTTRP00000007246/1-1492 -VLEGKFSND DSSSYDKPIT FLSLKLRLVN ILIGALQTET DPNNTQMIL- ENSP00000262879/1-1494 -VLEGKFSND DSSSYDKPIT FLSLKLRLVN ILIGALQTET DPNNTQMIL- ENSBTAP00000003956/1-1513 CVLIQKFSND DSSSYDKPIT FLSLKLRLVN ILIGALQTET DPNNTQMILV bmy_16213T0/1-1129 -VLEGKFSND DSSSYDKPIT FLSLKLRLVN ILIGALQTET DPNNTQMIL- BACU015501/1-1503 -VLEGKFSND DSSSYDKPIT FLSLKLRLVN ILIGALQTET DPNNTQMIL- 701 750 ENSTTRP00000007246/1-1492 -GAMLNIVQD SALLEAIGCQ MEMGGGENNL KSHSRTNSGI SSASGGSTEP ENSP00000262879/1-1494 -GAMLNIVQD SALLEAIGCQ MEMGGGENNL KSHSRTNSGI SSASGGSTEP ENSBTAP00000003956/1-1513 SGAMLNIVQD SALLEAIGCQ MEMGGGENNF KSHSRTNSGI SSASGGSTEP bmy_16213T0/1-1129 -GAMLNIVQD SALLEAIGCQ MEMGGGENNL KSHSRTNSGI SSASGGSTEP BACU015501/1-1503 -GAMLNIVQD SALLEAIGCQ MEMGGGENNL KSHSRTNSGI SSASGGSTEP 751 800 ENSTTRP00000007246/1-1492 TTPDSERPAQ ALLRDY---A LNTDSAAGLL IRSIHLVTQR LNSQWRQDMS ENSP00000262879/1-1494 TTPDSERPAQ ALLRDY---A LNTDSAAGLL IRSIHLVTQR LNSQWRQDMS ENSBTAP00000003956/1-1513 TTPDSERPAQ ALLRDY---A LNTDSAAGLL IRSIHLVTQR LNSQWRQDMS bmy_16213T0/1-1129 TTPDSERPAQ ALLRDYGNPS LNTDSAAGLL IRSIHLVTQR LNSQWRQDMS BACU015501/1-1503 TTPDSERPAQ ALLRDY---- ---DSAAGLL IRSIHLVTQR LNSQWRQDMS 801 850 ENSTTRP00000007246/1-1492 ISLAALELLS GLAKVKVMVD SGDRKRAISS VCSYIVYQCS RPAPLHSRDL ENSP00000262879/1-1494 ISLAALELLS GLAKVKVMVD SGDRKRAISS VCTYIVYQCS RPAPLHSRDL ENSBTAP00000003956/1-1513 ISLAALELLS GLAKVKVMVD SGDRKRAISS VCGYIVYQCS RPAPLHSRDL bmy_16213T0/1-1129 ISLAALELLS GLAKVKVMVD SGDRKRAISS VCSYIVYQCS RPAPLHSRDL BACU015501/1-1503 ISLAALELLS GLAKVKVMVD SGDRKRAISS VCSYIVYQCS RPAPLHSRDL 851 900 ENSTTRP00000007246/1-1492 HSMIVAAFQC LCVWLTEHPD MLDEKDCLKE VLEIVELGIS GSKSKNSEQE ENSP00000262879/1-1494 HSMIVAAFQC LCVWLTEHPD MLDEKDCLKE VLEIVELGIS GSKSKNNEQE ENSBTAP00000003956/1-1513 HSMIVAAFQC LCVWLTEHPD MLDEKDCLKE VLEIVELGIS GSKSKNSEQE bmy_16213T0/1-1129 HSMIVAAFQC LCVWLTEHPD MLDEKDCLKE VLEIVELGIS GSKSKNSEQE BACU015501/1-1503 HSMIVAAFQC LCVWLTEHPD MLDEKDCLKE VLEIVELGIS GSKSKNSEQE 901 950 ENSTTRP00000007246/1-1492 VKYKGDKEPN PASMRVKDAA EATLTCIMQL LGAFPSPSGP ASPCSLVNET ENSP00000262879/1-1494 VKYKGDKEPN PASMRVKDAA EATLTCIMQL LGAFPSPSGP ASPCSLVNET ENSBTAP00000003956/1-1513 VKYKGDKEPN PASMRVKDAA EATLTCIMQL LGAFPSPSGP ASPCSLVNET bmy_16213T0/1-1129 VKYKGDKEPN PASMRVKDAA EATLTCIMQL LGAFPSPSGP ASPCSLVNET BACU015501/1-1503 VKYKGDKEPN PASMRVKDAA EATLTCIMQL LGAFPSPSGP ASPCSLVNET 951 1000 ENSTTRP00000007246/1-1492 TLIKYSRLPT INKHSFRYFV LDNSVILAML EQPLGNEQND FFPSVTVLVR ENSP00000262879/1-1494 TLIKYSRLPT INKHSFRYFV LDNSVILAML EQPLGNEQND FFPSVTVLVR ENSBTAP00000003956/1-1513 TLIKYSRLPT INKHSFRYFV LDNSVILAML EQPLGNEQND FFPSVTVLVR bmy_16213T0/1-1129 TLIKYSRLPT INKHSFRYFV LDNSVILAML EQPLGNEQND FFPSVTVLVR BACU015501/1-1503 TLIKYSRLPT INKHSFRYFV LDNSVILAML EQPLGNEQND FFPSVTVLVR 1001 1050 ENSTTRP00000007246/1-1492 GMSGRLAWAQ QLCLLPRGAK ANQKLFVPEP RPVPKNDVGF KYTVKHRPFP ENSP00000262879/1-1494 GMSGRLAWAQ QLCLLPRGAK ANQKLFVPEP RPVPKNDVGF KYSVKHRPFP ENSBTAP00000003956/1-1513 GMSGRLAWAQ QLCLLPRGAK ANQKLFVPEP RPVPKNDVGL KYTVKHRPFP bmy_16213T0/1-1129 GMSGRLAWAQ QLCLLPRGAK ANQKLFVSEP RPVPKNDVGF KYTVKHRPFP BACU015501/1-1503 GMSGRLAWAQ QLCLLPRGAK ANQKLFVPEP RPIPKNDVGF KYTVKHRPFP 1051 1100 ENSTTRP00000007246/1-1492 EEVDKIPFVK ADLSIPDLHE IVTEELEERH EKLRNGMAQQ IAYEIHLEQQ ENSP00000262879/1-1494 EEVDKIPFVK ADLSIPDLHE IVTEELEERH EKLRSGMAQQ IAYEIHLEQQ ENSBTAP00000003956/1-1513 EEVDKIPFVK ADLSIPDLHE IVTEELEERH EKLRNGMAQQ IAYEIHLEQQ bmy_16213T0/1-1129 EEVDKIPFVK ADLSIPDLHE IVTEELEERH EKLRNGMAQQ IAYEIHLEQQ BACU015501/1-1503 EEVDKIPFVK ADLSIPDLHE IVTEELEERH EKLRNGMAQQ IAYEIHLEQQ 1101 1150 ENSTTRP00000007246/1-1492 SEEELQKRSF PDPITDCKPP PPAQEFQTAR LFLSHFGFLS LEALKEPANS ENSP00000262879/1-1494 SEEELQKRSF PDPVTDCKPP PPAQEFQTAR LFLSHFGFLS LEALKEPANS ENSBTAP00000003956/1-1513 SEEELQKRSF PDPVTDCKPP PPAQEFQTAR LFLSHFGFLS LEALKEPANS bmy_16213T0/1-1129 SEEELQKRSF PDPITDCKPP PPAQEFQTAR LFLSHFGFLS LEALK----- BACU015501/1-1503 SEEELQKRSF PDPVTDCKPP PPAQEFQTAR LFLSHFGFLS LEALKEPANS 1151 1200 ENSTTRP00000007246/1-1492 RLPPHLIALD SMIPGFFDDI GYLDLLPCRP FDTVFIFYMK PGQKTNQEIL ENSP00000262879/1-1494 RLPPHLIALD STIPGFFDDI GYLDLLPCRP FDTVFIFYMK PGQKTNQEIL ENSBTAP00000003956/1-1513 RLPPHLIALD STIPGFFDDI GYLDLLPCRP FDTVFIFYMK PGQKTNQEIL bmy_16213T0/1-1129 ---------- ---------- ---------- ---------- --------IL BACU015501/1-1503 RLPPHLIALD SMIPGFFDDI GYLDLLPCRP FDTVFIFYMK PGQKTNQEIL 1201 1250 ENSTTRP00000007246/1-1492 KNVESSRNVQ PHFLEFLLSL GWAVDVGRHP GWTGHVSTSW SINSCDDGEG ENSP00000262879/1-1494 KNVESSRTVQ PHFLEFLLSL GWSVDVGRHP GWTGHVSTSW SINCCDDGEG ENSBTAP00000003956/1-1513 KNVESSRNVQ PHFLEFLLSL GWSVDVGKHP GWTGHVSTSW SINSCDDGEG bmy_16213T0/1-1129 KNVESSRNVQ PHFLEFLLSL GWAVDVGRHP GWTGHVSTSW SINSCDDGEG BACU015501/1-1503 KNVESSRNVQ PHFLEFLLSL GWAVDVGRHP GWTGHVSTSW SINSCDDGEG 1251 1300 ENSTTRP00000007246/1-1492 PEQ-EVISSE DAGASIFNGQ -KVLYYADAL TEIAFVVPSS -ESLTDSLES ENSP00000262879/1-1494 SQQ-EVISSE DIGASIFNGQ KKVLYYADAL TEIAFVVPSP VESLTDSLES ENSBTAP00000003956/1-1513 PEQDEVISSE DVGASIFNGQ KKVLYYADAL TEIAFVVPSP VESLTDSLES bmy_16213T0/1-1129 PEQDEVISSE DAGASIFNGQ KKVLYYADAL TEIAFVVPSS VESLTDSLES BACU015501/1-1503 PEQDEVISSE DAGASIFNGQ KKVLYYADAL TEIAFVVPSS VESLTDSLES 1301 1350 ENSTTRP00000007246/1-1492 NISDQDSDSN MDLMPGILKQ PSLTLELFPN HTDNLNSSQR LSPSSRMKKL ENSP00000262879/1-1494 NISDQDSDSN MDLMPGILKQ PSLTLELFPN HTDNLNSSQR LSPSSRMRKL ENSBTAP00000003956/1-1513 NISDQDSDSN MDLMPGILKQ PSLTLELFPN HTDNLNSSQR LSPSSRMKKL bmy_16213T0/1-1129 NLSDQDSDSN MDLMPGILKQ PSLTLELFPN HTDNLNSSQR LSPSSRMKKL BACU015501/1-1503 NISDQDSDSN MDLMPGILKQ PSLTLELFPN HTDNLNSSQR LSPSSRMKKL 1351 1400 ENSTTRP00000007246/1-1492 PQGRPVPPLG PETRVSVVWV ERYDDIENFP LSDLMTEIST GVETTANSST ENSP00000262879/1-1494 PQGRPVPPLG PETRVSVVWV ERYDDIENFP LSELMTEIST GVETTANSST ENSBTAP00000003956/1-1513 PQGRPVPPLG PETRVSVVWV ERYDDIENFP LSDLMTEIST GVETTANSST bmy_16213T0/1-1129 PQGRPVPPLG PETRVSVVWV ERYDDIENFP LSDLMTEIST GVETTANSST BACU015501/1-1503 PQGRPVPPLG PETRVSVVWV ERYDDIENFP LSDLMTEIST GVETTANSST 1401 1450 ENSTTRP00000007246/1-1492 SLRSTALEKE VPVIFIHPLN TGLFRIKIQG ATGKFNMVIP LVDGMIVSRR ENSP00000262879/1-1494 SLRSTTLEKE VPVIFIHPLN TGLFRIKIQG ATGKFNMVIP LVDGMIVSRR ENSBTAP00000003956/1-1513 SLRSTALEKE VPVIFIHPLN TGLFRIKIQG ATGKFNMVIP LVDGMIVSRR bmy_16213T0/1-1129 SLSVLNL--- ---------- ---------- ---------- ---------- BACU015501/1-1503 SLRSTALEKE VPVIFIHPLN TGLFRIKIQG ATGKFNMVIP LVDGMIVSRR 1451 1500 ENSTTRP00000007246/1-1492 ALGFLVRQTV INICRRKRLE SDSYSPPHVR RKQKITDIVN KYRNKQLEPE ENSP00000262879/1-1494 ALGFLVRQTV INICRRKRLE SDSYSPPHVR RKQKITDIVN KYRNKQLEPE ENSBTAP00000003956/1-1513 ALGFLVRQTV INICRRKRLE SDSYSPPHVR RKQKITDIVN KYRNKQLEPE bmy_16213T0/1-1129 -LSFLVRQTV INICRRKRLE SDSYSPPHVR RKQKITDIVN KYRNKQLEPE BACU015501/1-1503 ALGFLVRQTV INICRRKRLE SDSYSPPHVR RKQKITDIVN KYRNKQLEPE 1501 1550 ENSTTRP00000007246/1-1492 FYTSLFQEVG LKNCSS ENSP00000262879/1-1494 FYTSLFQEVG LKNCSS ENSBTAP00000003956/1-1513 FYTSLFQEVG LKNCSS bmy_16213T0/1-1129 FYTSLFQEVG LKNGSS BACU015501/1-1503 FYTSLFQEVG LKNCSS