KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:35 2014 Check: 00 .. Name: ENSTTRP00000010914/1-839 Len: 957 Check: 1227 Weight: 1.00 Name: ENSP00000297508/1-904 Len: 957 Check: 8802 Weight: 1.00 Name: ENSBTAP00000003969/1-883 Len: 957 Check: 1373 Weight: 1.00 Name: bmy_08948T0/1-832 Len: 957 Check: 568 Weight: 1.00 Name: BACU005487/1-800 Len: 957 Check: 7500 Weight: 1.00 // 1 50 ENSTTRP00000010914/1-839 ---------- ---------- ---------- ---------- --------NF ENSP00000297508/1-904 MAAIRALQQW CRQQCEGYRD VNICNMTTSF RDGLAFCAIL HRHRPDLINF ENSBTAP00000003969/1-883 MAAIKALQQW CRQQCEGYRD VSITDMTTSF RDGLAFCAIL HRHRPDLINF bmy_08948T0/1-832 ---------- ---------- ---------- MSFTP----- -RPAPQ---- BACU005487/1-800 ---------- ---------- --------MS RDGVP----- -LPCPQLSPV 51 100 ENSTTRP00000010914/1-839 DALRKENIYE NNKLAFRVAE EQLGIPALLD AEDMVALKVP DRLSILTYVS ENSP00000297508/1-904 SALKKENIYE NNKLAFRVAE EHLGIPALLD AEDMVALKVP DRLSILTYVS ENSBTAP00000003969/1-883 DALRKENVYE NNKLAFSVAE EQLGIPALLD AEDMVALKVP DRLSILTYVS bmy_08948T0/1-832 ---------- ---------- SEVGLPHFSE VETGQG---- DDLGRGT--G BACU005487/1-800 PRGFRNKPVD -LRVAFRVAE EQLGIPALLD AEDMVALKVP DRLSVLTYVS 101 150 ENSTTRP00000010914/1-839 QYYNYFHGRS PIGGMAGVKR PLSDASEEPS GKKAPSQPAR -PSPTPARGQ ENSP00000297508/1-904 QYYNYFHGRS PIGGMAGVKR ASEDSEEEPS GKKAPVQAAK LPSPAPARKP ENSBTAP00000003969/1-883 QYYNYFQRGA SAERTAGVKR PSSNASEEPS GKKAPTQPIQ -PAPGPARGQ bmy_08948T0/1-832 DWVGFLHLGV GIGGARICLL APGDPQSQPP ARSPWARLET LNAESGGLGT BACU005487/1-800 QYYNYFHGRS PIGGVAGVGR PLSDASEEPS GKKAPSQPAR -PSATPARGQ 151 200 ENSTTRP00000010914/1-839 PLSPVSTNPT VQR------- ---KAGQAAV GS-VSSTCGV CGQHVHLVQR ENSP00000297508/1-904 PLSPAQTNPV VQRRNEGAGG PPPKTDQALA GSLVSSTCGV CGKHVHLVQR ENSBTAP00000003969/1-883 PLSPVSTNRT VQRKDGGTEG PPQKAGQAAG GS-LNSSCGV CGQHVHLMQR bmy_08948T0/1-832 SLLWDLRPPV C--------- ----TGQAAV GS-VSSTCGV CGRHVHLVQR BACU005487/1-800 PLSPVSTNPT VQR------- ---KAGQAAG GS-VSSTCGV CGQHVHLVQR 201 250 ENSTTRP00000010914/1-839 HLADGRLYHR SCFXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297508/1-904 HLADGRLYHR SCFRCKQCSC TLHSGAYKAT GEPGTFVCTS HLPAAASASP ENSBTAP00000003969/1-883 HLADGRLYHR GCFRCKQCSS TLHSGAYRAT GEPGVFICSS HHPETTSASP bmy_08948T0/1-832 HLADGKLYHR SCFRCKQCSN TLHSGAYKAA AEPGVFVCSG HCPETASAGP BACU005487/1-800 HLADGKLYHR SCFRCKQCSN TLHSGAYKAT AEPGVFVCSG HHPETASAGP 251 300 ENSTTRP00000010914/1-839 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297508/1-904 KLTGLVPRQP GAMGVDSRTS CSPQKAQEAN -------KAR PSAWEPAAGN ENSBTAP00000003969/1-883 TLPSLASRRH GAMSMDSETP GGLRKTREAS GQRDVGPKAR LPGWDAVAGS bmy_08948T0/1-832 TLPGLTPRRP GAMSMDSKTP GSPKKAQEAS GQRDAGPKAR PPAWGPAVGS BACU005487/1-800 TLPGLTPRRP GAVSMDPKTP GSPKKAQEAS GQRDAGPKAR PPAWGPAAGS 301 350 ENSTTRP00000010914/1-839 XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- --XXXXXXXX XXXXXXXXXX ENSP00000297508/1-904 SPARASVPAA PNPAATSATS VHVRSPARPS ESRLAPTPTE GKVRPRVTNS ENSBTAP00000003969/1-883 TSARGSAPAA TDPPAPASSR VPTGSPAAP- --RLMVGPAG GEAGTHVTSS bmy_08948T0/1-832 STAKGSPPAA ADPLATACSH VHAGSPAGA- --RLSVGPVG GKASTHVTNS BACU005487/1-800 STAKGSPPAA ADPPATTCSH VHAGSPAGA- --RLSVGPVG GKASTHVTNS 351 400 ENSTTRP00000010914/1-839 XXXXXXX--- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297508/1-904 SPMGWSSAAP CTAAAASHPA VPPSAPDPRP ATPQGGGAPR VAAPQTTLSS ENSBTAP00000003969/1-883 SLTVWPS--- --PAGRPRPT GTPSAPDPCP ATPQGWATPR VSAPQTKLSS bmy_08948T0/1-832 SPTGWSS--- --PAGSPRSA VTPSARDSRP ATPQGRVTPR GAAPQTKLSS BACU005487/1-800 SPMGWSS--- --PAGSPRSA VTLSARDSRP ATPQGRVTPR GAAPQTKLSS 401 450 ENSTTRP00000010914/1-839 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297508/1-904 SSTSAATVDP PAWTPSASRT QQARNKFFQT SAVPPGTSLS GRGPTPSLVL ENSBTAP00000003969/1-883 RPASPVPAST PAWTPSSSKT QQARERFFQT PGAAPGPG-- ---PAAADMP bmy_08948T0/1-832 RPASPVPASA AAWTPSSSRT QQARERFFQT PGAVPSPGPA GRAPAAADAP BACU005487/1-800 RPASPVPATA LAWTPSSSRT QQARERFFQM PGAGPGPGPA GRAPAAVDAP 451 500 ENSTTRP00000010914/1-839 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PSLATGPAPN SHPRSEGPGA ENSP00000297508/1-904 SKDSSKEQAR NFLKQALSAL EEAGAPAPGR PSPATAAVPS SQPKTEAPQA ENSBTAP00000003969/1-883 SRDGRKEQAL SFLRKTLPEL G-----APGR APTTATPAPS SHPRSEGPGA bmy_08948T0/1-832 SRDGSREQAL SFLQKALPEL GAAGAQAPGR PSLATGPAPG SHPRSEGPGA BACU005487/1-800 PRDGSREQAL SFLRKALPEL GAAGAQAPGR PSLATSPVPG SHPRSEGPGA 501 550 ENSTTRP00000010914/1-839 SPAATRPQSA SPQALSPAAR SAPPAPRSAG SISRVSAPPQ AGRKASAAPS ENSP00000297508/1-904 SPLAKPLQSS SPRVLGLPSR MEPPAPLSTS STSQASALPP AGRRNLAESS ENSBTAP00000003969/1-883 SPPARASLPT SPQTLSSPAR MGPPATPGVG STSWAS---Q EAKKGSAASS bmy_08948T0/1-832 SPSAKRSQSA SLQALSPAAR TAPPAALSVG STSRVSAPPQ AGRKGSAAPS BACU005487/1-800 SPSAKWSQSA SLQALSPAAR TAPPAPLSVG STSRVSAPPQ AGRKGSAAPS 551 600 ENSTTRP00000010914/1-839 GAVGAGAGSR LKLEAPRAEG KGPHVTP--S ASPQEGQEDG PAGWRARLKP ENSP00000297508/1-904 GVGRVGAGSR PKPEAPMAKG KSTTLTQDMS TSLQEGQEDG PAGWRANLKP ENSBTAP00000003969/1-883 GAVGAGAGSR LKLEAPLAKG P--------G ASPQGSPEDQ PAGWRARLKP bmy_08948T0/1-832 GAVGAGAGSR LKPEAPRAEG P--------S ASPQEGQEDG PAGWRARLKP BACU005487/1-800 GAIGAGAGSR LKPEAPRAEG P--------S ASPQEAQEDG PAGWRARLKP 601 650 ENSTTRP00000010914/1-839 VEKKSPAERA LELKEPQVLG EPRAGHAPQK VSGSSEGGVR ITLTPVRVDR ENSP00000297508/1-904 VDRRSPAERT LKPKEPRALA EPRAGEAPRK VSGSFAGSVH ITLTPVRPDR ENSBTAP00000003969/1-883 VD-KSPVDRA PEAKEPQVLR EPRAGDAAGK ASGSSKAGIR ITLTSVRVDR bmy_08948T0/1-832 VERKSPAERA LELKEPQVLG EPRAGGAPQK VSGSSEGGVR ITLTPVRVDR BACU005487/1-800 VEKKGPAERA LELKEPQVLG EPRAGDAPQK VSGSSQGGVH ITLTPVRVDR 651 700 ENSTTRP00000010914/1-839 TPGPAGASLL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297508/1-904 TPRPASPG-- PSLPARSPSP PRRRRLAVPA SLDVCDNWLR PEPPGQEARV ENSBTAP00000003969/1-883 MPGAAGPG-- ASLPAASASA SPLRKLAVPA SLDVSGDWLQ LEPSRKESPA bmy_08948T0/1-832 TPGPAGTSLL AASPSPLQSP SRRRKLAVPA SLDVSGNWLQ PEPSGKEAPA BACU005487/1-800 TPGPAGTSLL AASPSPLQSP SHRRKLAVPA SLDVSGNWLQ PEPSGKEAPA 701 750 ENSTTRP00000010914/1-839 XXXXXXXXXX X----XXXXX XXXXXXXXXX XXXXXXXXLH PDYVPQEEIQ ENSP00000297508/1-904 QSWKEEEKKP HLQGKPGRPL SPANVPALPG ETVTSPVRLH PDYLSPEEIQ ENSBTAP00000003969/1-883 RSQKEEEKGP P-QGKPGRPP GPAGVAAPPA KSAASPVRLH PDDMPP-EIQ bmy_08948T0/1-832 WSRKKEEKAP P-QGEPGRPS GPAGIPVPPG ESVPSPVRLH PDYVPQEEIQ BACU005487/1-800 WSRKKEEKAP P-QGKPGRPL GPAGIPVPPG ESVPSPVRLH PDYVPQEEIQ 751 800 ENSTTRP00000010914/1-839 RQVQDIERQL DALELRGVEL EKRLRAAEE- ---------- ---------- ENSP00000297508/1-904 RQLQDIERRL DALELRGVEL EKRLRAAEG- ---------- ---------- ENSBTAP00000003969/1-883 RQVQDIERQL DALELQGVGL EKRLRAAEG- ---------- ---------- bmy_08948T0/1-832 RQVQDIERQL DALELRGVEL EKRLRAAEEG EPRADPLPNA LCQLDPGPRP BACU005487/1-800 RQVQDIERQL DALELRGVEL EKRLRAAEE- ---------- ---------- 801 850 ENSTTRP00000010914/1-839 ---------- -------DAS EDALMVDWFR LIHEKQLLLR LESELMYKAR ENSP00000297508/1-904 ---------- -------DDA EDSLMVDWFW LIHEKQLLLR QESELMYKSK ENSBTAP00000003969/1-883 ---------- -------DDS EDALMVDWFR LVHEKQLLLR LESELMYKAR bmy_08948T0/1-832 RPRAGPARPV PSQLLSADAS EDALMVDWFR LIHEKQLLLR LESELMYKAR BACU005487/1-800 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000010914/1-839 DQRLEEQQLD IEGELRRLMA KPEALKSPQD RQREQDLLNQ YVNTVNDRSD ENSP00000297508/1-904 AQRLEEQQLD IEGELRRLMA KPEALKSLQE RRREQELLEQ YVSTVNDRSD ENSBTAP00000003969/1-883 DQRLEEQQLD LEGELRRLMA KPEGLKSPQD RRREQDLLDQ YVHTVNSRSD bmy_08948T0/1-832 DQRLEEQQLD IEGELRRLMA KPEGLKSPQD RQREQDLLSQ YVNTVNDR-- BACU005487/1-800 ---------- ---------- --EGLKSPQD RQREQDLLSQ YVNTVNDRSD 901 950 ENSTTRP00000010914/1-839 IIDLLDEDRL REQQEDEMLQ NMIRKMDL-- ----QRKKPR FRLSSIWSPK ENSP00000297508/1-904 IVDSLDEDRL REQEEDQMLR DMIEKLGL-- ----QRKKSK FRLSKIWSPK ENSBTAP00000003969/1-883 IIDFLDEDRL REQEEDEVLQ SMIQKLDLQR SSEEQRKKPR FRLSSIWSPK bmy_08948T0/1-832 ---------- ---------- ------NLQR SGGDQRKKPR FRLSNIWSPK BACU005487/1-800 IIDFLDEDRL REQEEDEMLQ NMIRKLDLQR SGGDQRKKPR FRLSNIWSPK 951 1000 ENSTTRP00000010914/1-839 SRSRTPE ENSP00000297508/1-904 SKSSPSQ ENSBTAP00000003969/1-883 SRSRTPE bmy_08948T0/1-832 SRSRTPE BACU005487/1-800 SRSRTPE