KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:37 2014 Check: 00 .. Name: ENSTTRP00000005440/1-757 Len: 765 Check: 5086 Weight: 1.00 Name: ENSP00000358251/1-765 Len: 765 Check: 963 Weight: 1.00 Name: ENSBTAP00000003978/1-763 Len: 765 Check: 8343 Weight: 1.00 Name: bmy_03058T0/1-751 Len: 765 Check: 683 Weight: 1.00 Name: BACU004674/1-750 Len: 765 Check: 8754 Weight: 1.00 // 1 50 ENSTTRP00000005440/1-757 --------IE QNAMSLAPSL PLQEDFVYHW KAITHYYIET SDDKAPVTDT ENSP00000358251/1-765 MFSKFTSILQ HAVEALAPSL PLQEDFVYHW KAITHYYIET SDDKAPVTDT ENSBTAP00000003978/1-763 MFSKFTSILQ HAVEALAPSL PLQEDFVYHW KAITHYYIET SDDKAPVTDT bmy_03058T0/1-751 ---------- ----MLAPSL PLQEDFVYHW KAITHYYIET SDDKAPVTDT BACU004674/1-750 ---------- -----LAPSL PLQEDFVYHW KAITHYYIET SDDKAPVTDT 51 100 ENSTTRP00000005440/1-757 NIPSHLEQML VILIQEESER EFGETGPCME YLLHHKILET LYTLGKADCP ENSP00000358251/1-765 NIPSHLEQML DILVQEENER ESGETGPCME YLLHHKILET LYTLGKADCP ENSBTAP00000003978/1-763 NIPSHLEQML VILVQEENER EFGETGPCME YLLHHKILET LYTLGKADCP bmy_03058T0/1-751 NIPSHLEQML VILIQEESER EFGETGPCME YLLHHKILET LYTLGKADCP BACU004674/1-750 NIPSHLEQML VILIQEESER EFGETGPCME YLLHHKILET LYTLGKADCP 101 150 ENSTTRP00000005440/1-757 PGMKQQVLVF YTKLLGKIRQ PLLPHINVHR PVQXXXXXXX XXXXXXXXXX ENSP00000358251/1-765 PGMKQQVLVF YTKLLGRIRQ PLLPHINVHR PVQKLIRLCG EVLATPTENE ENSBTAP00000003978/1-763 PGMKQQVLVF YTKLLGKIRQ PLLPHINVHR PVQKLIRLCG EVLATPTENE bmy_03058T0/1-751 PGMKQQVLVF YTKLLGKVRQ PLLPHINVHR PVQKLIRLCG EVLATPTENE BACU004674/1-750 PGMKQQVLVF YTKLLGKVRQ PLLPHINVHR PVQKLIRLCG EVLATPTENE 151 200 ENSTTRP00000005440/1-757 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358251/1-765 EIQFLCIVCA KLKQDPYLVN FFLENKMKSL ASKGVPNVIS EDTLKGQDSL ENSBTAP00000003978/1-763 EIQFLCIVCA KLKQDPYLVN FFLENKFKSL VSQGGPNAIS EDVLKSQDSL bmy_03058T0/1-751 EIQFLCIVCA KLKQDPYLVN FFLENKFKSL ASKGAPNATS EDVLKGQDSL BACU004674/1-750 EIQFLCIVCA KLKQDPYLVN FFLENKFKSL ASKGAPNATS EDVLKGQDSL 201 250 ENSTTRP00000005440/1-757 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358251/1-765 STDTGQSRQP EELSGATGME QTELEDEPPH QMDHLSTSLD NLSVTSLPEA ENSBTAP00000003978/1-763 STDTGQSCQA EEPLGASGTE HT--DDQPSH QMGDLSTSLE NLSVTALPEA bmy_03058T0/1-751 STDTGQSCRP EEPSGASGME HTELEDAPPP QLDDLSTGLD NLSIASLPEA BACU004674/1-750 STDTGQSCRP EEPSGASGME HTELEDAPPP QPDDLSTGLD NLSIAALPEA 251 300 ENSTTRP00000005440/1-757 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358251/1-765 SVVCPNQDYN LVNSLLNLTR SPDGRIAVKA CEGLMLLVSL PEPAAAKCLT ENSBTAP00000003978/1-763 TVVRPNQDYN LVNSLLNLTR SPDGRIAVKA CEGLMLLVSL PEPAAAKCLT bmy_03058T0/1-751 TVVRPNQDYN LVNSLLNLTR SPDGRIAVKA CEGLMLLVSL PEPAAAKCLT BACU004674/1-750 TVVRPNQDYN LVNSLLNLTR SPDGRIAVKA CEGLMLLVSL PEPAAAKCLT 301 350 ENSTTRP00000005440/1-757 XXXXXXXXXX XXXXHSLYAL PQSVDPLDIE IVEAINWGLD SYSHKEDASA ENSP00000358251/1-765 QSTCLCELLT DRLASLYKAL PQSVDPLDIE TVEAINWGLD SYSHKEDASA ENSBTAP00000003978/1-763 QSTCLCELLT DRLASLYKAL PQSVDPLDIE TVEAVNWGLD SYSHKEDASA bmy_03058T0/1-751 QSTCLCELLT DRLASLYKAL PQSVDPLDIE TVEAINWGLD SYSHKEDASA BACU004674/1-750 QSTCLCELLT DRLASLYKAL PQSVDPLDIE TVEAINWGLD SYSHKEDASA 351 400 ENSTTRP00000005440/1-757 FPGKRALISF LSWFDYCDQL IKEAQKTAAV ALAKAVHERF FIGVMEPQLM ENSP00000358251/1-765 FPGKRALISF LSWFDYCDQL IKEAQKTAAV ALAKAVHERF FIGVMEPQLM ENSBTAP00000003978/1-763 FPGKRALISF LSWFDYCDQL IKEAQKTAAV ALAKAVHERF FIGVMEPQLM bmy_03058T0/1-751 FPGKRALISF LSWFDYCDQL IKEAQKTAAV ALAKAVHERF FIGVMEPQLM BACU004674/1-750 FPGKRALISF LSWFDYCDQL IKEAQKTAAV ALAKAVHERF FIGVMEPQLM 401 450 ENSTTRP00000005440/1-757 QTSEMGILTS TALLHRIVRQ VTSDILLQEM VFFILGEQRE PETLAEISRH ENSP00000358251/1-765 QTSEMGILTS TALLHRIVRQ VTSDVLLQEM VFFILGEQRE PETLAEISRH ENSBTAP00000003978/1-763 QTSEMGILTS TALLHRIVRQ VTSDILLQEM VFFILGEQRE PETLAEISRH bmy_03058T0/1-751 QTSEMGILTS TALLHRIVRQ VTSDILLQEM VFFILGEQRE PETLAEISRH BACU004674/1-750 QTSEMGILTS TALLHRIVRQ VTSDILLQEM VFFILGEQRE PETLAEISRH 451 500 ENSTTRP00000005440/1-757 PLRHRLIEHC DHISDEISIM TLRMFEHLLQ KPNEHILYNL VLRNLEERNY ENSP00000358251/1-765 PLRHRLIEHC DHISDEISIM TLRMFEHLLQ KPNEHILYNL VLRNLEERNY ENSBTAP00000003978/1-763 PLRHRLIEHC DHISDEISIM TLRMFEHLLQ KPNEHILYNL VLRNLEERNY bmy_03058T0/1-751 PLRHRLIEHC DHISDEISIM TLRMFEHLLQ KPNEHILYNL VLRNLEERNY BACU004674/1-750 PLRHRLIEHC DHISDEISIM TLRMFEHLLQ KPNEHILYNL VLRNLEERNY 501 550 ENSTTRP00000005440/1-757 TEYKPVCPED KDVVENGLIA GAVDLEEDPL FTDISPDNTL SNQEWLSSSP ENSP00000358251/1-765 TEYKPLCPED KDVVENGLIA GAVDLEEDPL FTDISPENTL PNQEWLSSSP ENSBTAP00000003978/1-763 TEYKPVCPED KDVVENGLIA GAVDLEEDPL FTDISPDNTL SNQEWLSSSP bmy_03058T0/1-751 TEYKPVCPED KDVVENGLIA GAVDLEEDPL FTDISPDNTL SNQEWLSSSP BACU004674/1-750 TEYKPVCPED KDVVENGLIA GAVDLEEDPL FTDISPDNTL SNQEWLSSSP 551 600 ENSTTRP00000005440/1-757 PASPDHPKND GKTEVHKIVN SFLCLVPDEA KSSYHVEGTG YDTYLRDAHR ENSP00000358251/1-765 PATPDHPKND GKTEVHKIVN SFLCLVPDDA KSSYHVEGTG YDTYLRDAHR ENSBTAP00000003978/1-763 PATPDHPKTD GKTEVHKIVN SFLCLVPDEA KSSYHVEGTG YDTYLRDAHR bmy_03058T0/1-751 PASPDHPKND GKTEVHKIVN SFLCLVPDEA KSSYHVEGTG YDTYLRDAHR BACU004674/1-750 PASPDHPKND GKTEVHKIVN SFLCLVPDEA KSSYHVEGTG YDTYLRDAHR 601 650 ENSTTRP00000005440/1-757 QFRDYCAICL RWEWPGSPKA LEKCNLEAAF FEGHFLKVLF DRMGRILDQP ENSP00000358251/1-765 QFRDYCAICL RWEWPGSPKA LEKCNLEAAF FEGHFLKVLF DRMGRILDQP ENSBTAP00000003978/1-763 QFRDYCAICL RWEWPGSPKA LERCNLEAAF FEGHFLKVLF DRMGRILDQP bmy_03058T0/1-751 QFRDYCAICL RWEWPGSPKA LEKCNLEAAF FEGHFLKVLF DRMGRILDQP BACU004674/1-750 QFRDYCAICL RWEWPGSPKA LEKCNLEAAF FEGHFLKVLF DRMGRILDQP 651 700 ENSTTRP00000005440/1-757 YDVNLQVTSV LSRLSLFPHP HIHEYLLDPY VNLASGCRSL FSVIVRVVGD ENSP00000358251/1-765 YDVNLQVTSV LSRLSLFPHP HIHEYLLDPY VNLAPGCRSL FSVIVRVVGD ENSBTAP00000003978/1-763 YDVNLQVTSV LSRLSLFPHP HIHEYLLDPY VNLASGCRSL FSVIVRVVGD bmy_03058T0/1-751 YDVNLQVTSV LSRLSLFPHP HIHEYLLDPY VNLASGCRSL FSVIVRVVGD BACU004674/1-750 YDVNLQVTSV LSRLSLFPHP HIHEYLLDPY VNLASGCRSL FSVIVRVVGD 701 750 ENSTTRP00000005440/1-757 LMVRIQRIQD FTPKLLLVRK RLLGLEPEGP IIEHITLLEG VIVLEEFCKE ENSP00000358251/1-765 LMLRIQRIQD FTPKLLLVRK RLLGLEPEGP IIDHITLLEG VIVLEEFCKE ENSBTAP00000003978/1-763 LMVRIQRIQD FTPKLLLVRK RLLGLEPEGP VIDHITLLEG VIVLEEFCKE bmy_03058T0/1-751 LMVRIQRIQD FTPKLLLVRK RLLGLEPEGP IIEHITLLEG VIVLEEFCKE BACU004674/1-750 LMVRIQRIQD FTPKLLLVRK RLLGLEPEGP IIEHITLLEG VIVLEEFCKE 751 800 ENSTTRP00000005440/1-757 LAAIAFVKYH AASTP ENSP00000358251/1-765 LAAIAFVKYH ASSTP ENSBTAP00000003978/1-763 LAAIAFVKYH AASTP bmy_03058T0/1-751 LAAIAFVKYH AASTP BACU004674/1-750 LAAIAFVKYH AASTP