KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:22:39 2014 Check: 00 .. Name: ENSTTRP00000002101/1-1544 Len: 1699 Check: 8150 Weight: 1.00 Name: ENSBTAP00000003985/1-1300 Len: 1699 Check: 4107 Weight: 1.00 Name: bmy_01200T0/1-1460 Len: 1699 Check: 1071 Weight: 1.00 Name: BACU010391/1-1595 Len: 1699 Check: 7415 Weight: 1.00 // 1 50 ENSTTRP00000002101/1-1544 ---------- ---------- ---------- ---------- -MAFSKGFRI ENSBTAP00000003985/1-1300 ---------- ---------- ---------- ---------- -MAFSKGFRI bmy_01200T0/1-1460 ---------- ---------- ---------- ---------- ---------- BACU010391/1-1595 MRKRWACWSG SDASGGCGGG GGCGRRRRRS RRKRAASEER RMAFSKGFRI 51 100 ENSTTRP00000002101/1-1544 YHKLDPPPFS LIVETRHKEE CLMFESGAVA VLSSAEKEAI KSTYSKVLDA ENSBTAP00000003985/1-1300 YHKLDPPPFS LIVETRHKEE CLMFESGAVA VLSSAEKEAI KGTYSKVLDA bmy_01200T0/1-1460 ---------- ---------- ---------- ---SAEKEAI KSTYSKVLDA BACU010391/1-1595 YHKLDPPPFS LIVETRHKEE CLMFESGAVA VLSSAEKEAI KSTYSKVLDA 101 150 ENSTTRP00000002101/1-1544 YGLLGVLRLN LGDIMLHYLV LVTGCMSVGK IQESEVFRVT STEFISLRID ENSBTAP00000003985/1-1300 YGLLGVLRLN LGDIMLHYLV LVTGCMSVGK IQESEVFRVT STEFISLRVD bmy_01200T0/1-1460 YGLLGVLRLN LGDIMLHYLV LVTGCMSVGK IQESEVFRVT STEFISLRID BACU010391/1-1595 YGLLGVLRLN LGDIMLHYLV LVTGCMSVGK IQESEVFRVT STEFISLRID 151 200 ENSTTRP00000002101/1-1544 SSDEDRVSEV RKVLNSGNFY FAWSASGVSL DLSLNAHRSM QEHTTDNRFF ENSBTAP00000003985/1-1300 SSDEDRISEV RKVLNSGNFY FAWSASGVSL DLSLNAHRSL QEHTTDNRFF bmy_01200T0/1-1460 SSDEDRVSEV RKVLNSGNFY FAWSASGVSL DLSLNAHRSM QEHTTDNRFF BACU010391/1-1595 SSEEDRVSEV RKVLNSGNFY FAWSASGVSL DLSLNAHRSM QEHTTDNRFF 201 250 ENSTTRP00000002101/1-1544 WNQSLHLHLK HYGVNCDDWL LRLMCGGVEV RTIYAAHKQA KACLVSRLSC ENSBTAP00000003985/1-1300 WNQSLHLHLK HYGVNCDDWL LRLMCGGVEI RTIYAAHKQA KACLISRLSC bmy_01200T0/1-1460 WNQSLHLHLK HYGVNCDDWL LRLMCGGVEV RTIYAAHKQA KACLVSRLSC BACU010391/1-1595 WNQSLHLHLK HYGVNCDDWL LRLMCGGVEV RTIYAAHKQA KACLVSRLSC 251 300 ENSTTRP00000002101/1-1544 ERAGTRFNVR GTNDDGHVAN FVETEQXXXX XDCVSSFIQI RGSVPLFWEQ ENSBTAP00000003985/1-1300 ERAGTRFNVR GTNDDGHVAN FVETEQVVYL DDSVSSFIQI RGSVPLFWEQ bmy_01200T0/1-1460 ERAGTRFNVR GTNDDGHVAN FVETEQVVYL DDCVSSFIQI RGSVPLFWEQ BACU010391/1-1595 ERAGTRFNVR GTNDDGHVAN FVETEQVVYL DDCVSSFIQI RGSVPLFWEQ 301 350 ENSTTRP00000002101/1-1544 PGLQVGSHRV RMSRGFEANA PAFDXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003985/1-1300 PGLQVGSHRV RMSRGFEANA PAFDRHFRTL KNLYGKQIIV NLLGSKEGEH bmy_01200T0/1-1460 PGLQVGSHRV RMSRGFEANA PAFDRHFRTL KNLYGKQIIV NLLGSKEGEH BACU010391/1-1595 PGLQVGSHRV RMSRGFEANA PAFDRHFRTL KNLYGKQIIV NLLGSKEGEH 351 400 ENSTTRP00000002101/1-1544 XXXXXXXSH- KACGHETDIQ MVNFDYHQMV KGGKAEKLHS VLKPQVQKFL ENSBTAP00000003985/1-1300 MLSKAFQSHL KASEHAADIQ MVNFDYHQMV KGGKAEKLHS VLKPQVQKFL bmy_01200T0/1-1460 MLSKAFQSHL KASEHATDIQ MVNFDYHQMV KGGKAEKLHS VLKPQVQKFL BACU010391/1-1595 MLSKAFQSHL KASEHATDIQ MVNFDYHQMV KGGKAEKLHS VLKPQVQKFL 401 450 ENSTTRP00000002101/1-1544 DYGFFYFNGS EVQRCQSGTV RTNCLDCLDR TNSVQAFLGL EMLTKQLEAL ENSBTAP00000003985/1-1300 DYGIFHFDGS EVQRCQSGTV RTNCLDCLDR TNSVQAFLGL EMLTKQLEAL bmy_01200T0/1-1460 DYGFFYFNGS EVQRCQSGTV RTNCLDCLDR TNSVQAFLGL EMLTKQLEAL BACU010391/1-1595 DYGFFYFNGS EVQRCQSGTV RTNCLDCLDR TNSVQAFLGL EMLTKQLEAL 451 500 ENSTTRP00000002101/1-1544 GLAEKPQLVT RFQEVFRSMW SVNGDSISKI YAGTGALEGK A---KLKDGA ENSBTAP00000003985/1-1300 GLAEKPQLVT RFQEVFRSMW SVNGDSISKI YAGTGALEGK A---KLKDGA bmy_01200T0/1-1460 GLAEKPQLVT RFQEVFRSMW SVNGDSISKI YAGTGALEGK AKAGKLKDGA BACU010391/1-1595 GLAEKPQLVT RFQEVFRSMW SVNGDSISKI YAGTGALEGK AKAGKLKDGA 501 550 ENSTTRP00000002101/1-1544 RSVSRTIQNN FFDSSKQEAI DVLLLGNTLN SDLADKARAL LTTGSLRVSE ENSBTAP00000003985/1-1300 RSVSRTIQNN FFDSSKQEAI DVLLLGNTLN SDLADKARAL LTTGSLRVSE bmy_01200T0/1-1460 RSVSRTIQNN FFDSSKQEAI DVLLLGNTLN SDLADKARAL LTTGSLR--- BACU010391/1-1595 RSVSRTIQNN FFDSSKQEAI DVLLLGNTLN SDLADKARAL LTTGSLR--- 551 600 ENSTTRP00000002101/1-1544 QTLQSASSKV LKSLCENFYK YSKPKKIRVC VGTWNVNGGK QFRSIAFKNQ ENSBTAP00000003985/1-1300 QTLQSASSKV LKSMCENFYK YSKPKKIRVC VGTWNVNGGK QFRSIAFKNQ bmy_01200T0/1-1460 -----ASSKV LKSMCENFYK YSKPKKIRVC VGTWNVNGGK QFRSIAFKNQ BACU010391/1-1595 -----ASSKV LKSMCENFYK YSKPKKIRVC VGTWNVNGGK QFRSIAFKNQ 601 650 ENSTTRP00000002101/1-1544 TLTDWLLDAP KLAGIQEFQD KRSKPTDIFA IGFEEMVELN AGNIVSASTT ENSBTAP00000003985/1-1300 TLTDWLLDAP KLAGIQEFQD KRSKPMDIFA IGFEEMVELN AGNIVNASTT bmy_01200T0/1-1460 TLTDWLLDAP KLAGIQEFQD KRSKPTDIFA IGFEEMVELN AGNIVNASTT BACU010391/1-1595 TLTDWLLDAP QLAGIQEFQD KRSKPTDIFA IGFEEMVELN AGNIVNASTT 651 700 ENSTTRP00000002101/1-1544 NQKLWAVELQ KTISRDNKYV LLASEQLVGV CLFVFIRPQH APFIRDVAVD ENSBTAP00000003985/1-1300 NQKLWAAELQ KTISRDNKYV LLASEQLVGV CLFVFIRPQH APFIRDVAVD bmy_01200T0/1-1460 NQKLWAVELQ KTVSRDNKYV LLASEQ---- ---------- -----DVAVD BACU010391/1-1595 NQKLWAVELQ KTISRDNKYV LLASEQLVGV CLFVFIRPQH APFIRDVAVD 701 750 ENSTTRP00000002101/1-1544 TVKTGMGGAT GNKGAVAIRM LFHTTSLCFV CSHFAAGQSQ VKERNEDFVE ENSBTAP00000003985/1-1300 TVKTGMGGAT GNKGAVAIRM LFHTTSLCFV CSHFAAGQSQ VKERNDDFVE bmy_01200T0/1-1460 TVKTGMGGAT GNKGAVAIRM LFHTTSLCFV CSHFAAGQSQ VKERNEDFVE BACU010391/1-1595 TVKTGMGGAT GNKGAVAIRM LFHTTSLCFV CSHFAAGQSQ VKERNEDFVE 751 800 ENSTTRP00000002101/1-1544 IARKLSFPMG RMLFSHDYVF WCGDFNYRID LPNEEVKELI RQQNWDSLIA ENSBTAP00000003985/1-1300 IARKLSFPMG RLLFSHDYVF WCGDFNYRID LPNEEVKELI RQQNWDSLIA bmy_01200T0/1-1460 IARKLSFPMG RMLFSHDYVF WCGDFNYRID LPNEEVKELI RQQNWDSLIA BACU010391/1-1595 IARKLSFPMG RMLFSHDYVF WCGDFNYRID LPNEEVKELI RQQNWDSLIA 801 850 ENSTTRP00000002101/1-1544 GDQLINQKNA GQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003985/1-1300 GDQLINQKNA GQIFRGFLEG KVTFAPTYKY DLFSDDYDTS EKCRTPAWTD bmy_01200T0/1-1460 GDQLINQKNA GQIFRGFLEG KVTFAPTYKY DLFSDDYDTS EKCRTPAWTD BACU010391/1-1595 GDQLINQKNA GQIFRGFLEG KVTFAPTYKY DLFSDDYDTS EKCRTPAWTD 851 900 ENSTTRP00000002101/1-1544 XXXXXXXXXX XXXXXEDLDL LNASFQDGSK ILYTWTPGTL LHYGRAELKT ENSBTAP00000003985/1-1300 RVLWRRRKWP FDRSAEDLDL LNASFQDESK ILYTWTPGTL LHYGRAELKT bmy_01200T0/1-1460 RVLWRRRKWP FDRSAEDLDL LNASFQDGSK ILYTWTPGTL LHYGRAELKT BACU010391/1-1595 RVLWRRRKWP FDRSAEDLDL LNASFQDGSK ILYTWTPGTL LHYGRAELKT 901 950 ENSTTRP00000002101/1-1544 SDHRPVVALI DIDIFEVEAE ERQNIYKEVI AVQGPPDGTV LVSIKSSLPE ENSBTAP00000003985/1-1300 SDHRPVVALI DIDIFEVEAE ERQNIYKEVI AVQGPPDGTV LVSIKSSLPE bmy_01200T0/1-1460 SDHRPVVALI DIDIFEVEAE ERQSIYKEVI AVQGPPDGTV LVSIKSSLPE BACU010391/1-1595 SDHRPVVALI DIDIFEVEAE ERQSIYKEVI AVQGPPDGTV LVSIRSSLPE 951 1000 ENSTTRP00000002101/1-1544 NNFFDDALID ELLQQFTNFG EVILIRFVED KMWVTFLEGS SALSVLSLNG ENSBTAP00000003985/1-1300 NNFFNDALID ELLQQFTNFG EVILIRFVED KMWVTFLEGS SALNVLNLNG bmy_01200T0/1-1460 NNFFDDALID ELLQQFTNFG EVILIRFVED KMWVTFLEGS SALSVLSLNG BACU010391/1-1595 NNFFDDALID ELLQQFTNFG EVILIRFVED KMWVTFLEGS SALSVLSLNG 1001 1050 ENSTTRP00000002101/1-1544 KELLGRTITI TLKSPDWIKT LEEEMSLEKI SVPLPSSTSS TLLGEDAEVA ENSBTAP00000003985/1-1300 KELLGRTITI TLKSPDWIKT LEEEMSLEKI NVPLPSSTSS TLLGEDAEVT bmy_01200T0/1-1460 KELLGRTITI TLKSPDWIKT LEEEMSLEKI SVPLPSSTSS TLLGEDAEVA BACU010391/1-1595 KELLGRTITI TLKSPDWIKT LEEEMSLEKI SVPLPSSTSS TLLGEDAEVA 1051 1100 ENSTTRP00000002101/1-1544 ADFDMEGDVD DYSAEVEEIL PQHLQPSSSS GLGTSPSSSP RTSPCQSPTI ENSBTAP00000003985/1-1300 ADFDMEGDVD DYSAEVEEIL PQHLQPSSSS GLGTSPGSSP RTSPCQSPTI bmy_01200T0/1-1460 ADFDMEGDVD DYSAEVEEIL PQHLQPSSSS GLGTSPSSSP RTSPCQSPTI BACU010391/1-1595 ADFDMEG--- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000002101/1-1544 SEGPVPSLPV RPSRAPSRTP GHPASQSSPV DT-------- ----QPLEPK ENSBTAP00000003985/1-1300 SEGPVPSLPV RPSRAPSRTP GPPASQSSPV DTLPATQLQQ KDSSQTLEPK bmy_01200T0/1-1460 SEGPVPSLPV RPSRAPSRTP GHPASQSSPV DTLLATQLQQ KDSSQPLEPK BACU010391/1-1595 ---------- ---------- -------SPV DALLATQLQQ KDSSQPLEPK 1151 1200 ENSTTRP00000002101/1-1544 RPPPPRPAAP PARPAPPQRP PPPAXXXXXX XXRKFIGGPP SPGVARREME ENSBTAP00000003985/1-1300 RPPPPRPVAP PARPAPPQRP PPPS------ -------GAR SPAPARKEFG bmy_01200T0/1-1460 RPPPPRPVAP PARPAPPQRP PPPA------ -------GAR SPAPARKEFG BACU010391/1-1595 RPPPPRLVAP PARPAPPQRP PPPA------ ---------- ---------- 1201 1250 ENSTTRP00000002101/1-1544 APKSPGTTRK DNIGRNQPSP QTGLTGPGPA GYSTARPIIP PRAGVISAPQ ENSBTAP00000003985/1-1300 APKSPGTTRR DNLGRSQLPP QAGLPGPGLA GHSAARPIIP PRAGVISAPQ bmy_01200T0/1-1460 GIGAP----- ---------- ----PSPG-- -------IIP PRAGVISAPQ BACU010391/1-1595 APKSPGTTRK DNIGRSQPSP QTGLTGPGPA GYSTARPIIP PRAGVISAPQ 1251 1300 ENSTTRP00000002101/1-1544 SHARVSAGRL TPESQSKPSE VLKGPAVLPE SLK-QAAPPV QPSL------ ENSBTAP00000003985/1-1300 SHARVSAGRL TPESQSKTSE VLKGPALLPE PLKPQAALPV PPSL------ bmy_01200T0/1-1460 SHARVSAGRL TPESQSKPSE VLKGPALLPE PLKPQAAPPV QPSL------ BACU010391/1-1595 SHARVSAGRL TPESQSKPSE VLKGPALLPE PLKPQAAPPV QPSLXXXXXX 1301 1350 ENSTTRP00000002101/1-1544 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003985/1-1300 ---------- ---------- ---------- ---------- ---------- bmy_01200T0/1-1460 ---------- ---------- ---------- ---------- ---------- BACU010391/1-1595 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1351 1400 ENSTTRP00000002101/1-1544 ---------- ---------- ---------- --APPVQQMR EPLVPVATPM ENSBTAP00000003985/1-1300 ---------- ---------- -------APP SLAPPVQKMQ EPLIPVAAPL bmy_01200T0/1-1460 ---------- ---------- ---------- --APPVQQMR EPRVPVATPM BACU010391/1-1595 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXMR EPRVPVATPM 1401 1450 ENSTTRP00000002101/1-1544 PQSA------ --PQPPPRSR SSHSLPSEPS VQPQVKTNGV SAIRLDSPLK ENSBTAP00000003985/1-1300 AQAALQPSLE TPPQPPPRSR SSHSLPSEPP AQPQ------ ---------- bmy_01200T0/1-1460 PQSAPQPSLE AIPQPPPRSR SSHSLPSEPS VQPQVKTNGV SAIRLDSPLK BACU010391/1-1595 PQSAPQPSLE AVPQPPPRSR SSHSLPSEPS VQPQVKTNGV SAISLDSPLK 1451 1500 ENSTTRP00000002101/1-1544 TDPFEDLSLN LLAVSKAQPS VQTPNPNGLI PLPSATPSNM NTLSSVSCMP ENSBTAP00000003985/1-1300 ---------- ---------- ---------- ---------- ---------- bmy_01200T0/1-1460 TDPFEDLSLN LLAVSKAQPS VQTPDPKGLI SLPSATPSNM NTLSSVSCML BACU010391/1-1595 TDPFEDLSLN LLAVSKTQPS VQTPDPKGLI SLPSATPSNM NTLSSVSCMP 1501 1550 ENSTTRP00000002101/1-1544 T-PPIPARSK SQENTRCSPN PFTESSSSTN PFTDRTAAPR NPFRAESQES ENSBTAP00000003985/1-1300 ---------- ---------- ---------- ---------- ---------- bmy_01200T0/1-1460 TMPPIPARSK SQENTRCSPN PFIESSSSTN PFTDRTAAPR NPFRAESQAS BACU010391/1-1595 TMPPIPARSK SQENTRCSPN PFIESSSSTN PFTDRTAAPR NPFRAESQAS 1551 1600 ENSTTRP00000002101/1-1544 EATSWFSREE PLAQSPFPSL QPLRQNSSKP SSSLDGFEDS FGPQGPPTLK ENSBTAP00000003985/1-1300 ---------- ---------- ---------- ---------- ---------- bmy_01200T0/1-1460 EATSWFSKEE PVAQSPFPSP KPPGQNSSKP SSSLGGFEDS FDPQGPPTLK BACU010391/1-1595 EATSWFSKEE PVAQSPFPSP KPPGQNSSKP SSSLGGFEDS FDPQGPPALK 1601 1650 ENSTTRP00000002101/1-1544 SSNPKGWVTF EEEEDFGVTG KSRPTCPDLL GHQPSSSSGS KVTLSDDWNK ENSBTAP00000003985/1-1300 ---------- ---------- ---------- QEQPSG---- ---------- bmy_01200T0/1-1460 SSNPKGWVTF EEEEDFGVTG KSRSTCPDLL GDQPSSSSGS KVTFSDDWNK BACU010391/1-1595 SSNPKGWVTF EEEEDFGVTG KSRSTCPDRL GDQPSSSSGS KVTFSDDWNR 1651 1700 ENSTTRP00000002101/1-1544 GTSVSFCVLP ARRPPPPPVP LLPPGTTPPA DPFTALASKA SPTLDFTER ENSBTAP00000003985/1-1300 ---------- ---------- ---------- ---------- --------- bmy_01200T0/1-1460 GTSVSFCVLP ARRPPPPPAP LLPPGTTPPA DPFTALASKA SPTLDFTER BACU010391/1-1595 GTSVSFCVLP ARRPPPPPAP LLPPGTTPPA DPFTALASKA SPTLDFTER