KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:22:40 2014 Check: 00 .. Name: ENSBTAP00000003986/1-922 Len: 924 Check: 7046 Weight: 1.00 Name: ENSP00000328992/1-917 Len: 924 Check: 4879 Weight: 1.00 Name: bmy_01202T0/1-842 Len: 924 Check: 7237 Weight: 1.00 Name: ENSTTRP00000002109/1-916 Len: 924 Check: 5403 Weight: 1.00 // 1 50 ENSBTAP00000003986/1-922 MFRKARRVNV RKRNDSEEEE RERDEEQEPP PLLPPPPGTG EEPGPGGGGG ENSP00000328992/1-917 MFRKARRVNV RKRNDSEEEE RERDEEQEPP PLLPPP-GTG EEAGP--GGG bmy_01202T0/1-842 MFRKARRVNV RKRNDSEEEE RERDEEQEPP PLLPPP-GTG EEPGP--GGG ENSTTRP00000002109/1-916 MFRKARRVNV RKRNDSEEEE RERDEEQEPP PLLPPP-GTG EEPGP--GGG 51 100 ENSBTAP00000003986/1-922 DRAPAGESLL GPGPPPPPPP PAALTS--GT EAGGCLPGGL EPGNGLKPRK ENSP00000328992/1-917 DRAPGGESLL GPGP----SP PSALTPGLGA EAGGGFPGGA EPGNGLKPRK bmy_01202T0/1-842 DRAPGGESLL GPGL----PP PSALTSGPGI EAGGCFPGGA EPGNGLKPRK ENSTTRP00000002109/1-916 DRAPGGEPLL GPGL----PP PSALTSGPGI EAGGCFPGGA EPGNGLKPRK 101 150 ENSBTAP00000003986/1-922 RPRENKEVPR ASLLSFQDED EENEEVFKVK KSSYSKKIVK LLKKEYKEDL ENSP00000328992/1-917 RPRENKEVPR ASLLSFQDEE EENEEVFKVK KSSYSKKIVK LLKKEYKEDL bmy_01202T0/1-842 RPRENKEVPR ASLLSFQDEE EESEEVFKVK KSSYSKKIVK LLKKEYKEDL ENSTTRP00000002109/1-916 RPRENKEVPR ASLLSFQDED EESEEVFKVK KSSYSKKIVK LLKKEYKEDL 151 200 ENSBTAP00000003986/1-922 EKSKIKTELN SSADNEPPLD KAGHVKDTSL EDGVIISEHG EDEMDMESEK ENSP00000328992/1-917 EKSKIKTELN SSAESEQPLD KTGHVKDTNQ EDGVIISEHG EDEMDMESEK bmy_01202T0/1-842 EKSKIKTEIN SSADNEPPLD KTGHVKDTSQ EDGVIISEHG EDEMDMESEK ENSTTRP00000002109/1-916 EKSKIKTEIN SSADSEPPLD KTGHVKDTSQ EDGVIISEHG EDEMDMESEK 201 250 ENSBTAP00000003986/1-922 EEEKPKAGGA FSNALSSLNV LRPGEIPDAA FIHAARKKRQ MARELGDFTP ENSP00000328992/1-917 EEEKPKTGGA FSNALSSLNV LRPGEIPDAA FIHAARKKRQ MARELGDFTP bmy_01202T0/1-842 EEEKPKAAGA FSNALSSLNV LRPGEIPDAA FIHAARKKRQ MARELGDFTP ENSTTRP00000002109/1-916 EEEKPKAAGA FSNALSSLNV LRPGEIPDAA FIHAARKKRQ MARELGDFTP 251 300 ENSBTAP00000003986/1-922 HDSEPGKGRL VREDENDASD DEDDDEKRRI VFSVKEKSQR QKIAEEIGIE ENSP00000328992/1-917 HDNEPGKGRL VREDENDASD DEDDDEKRRI VFSVKEKSQR QKIAEEIGIE bmy_01202T0/1-842 HDSEPGKGRL VREDENDASD DEDDDEKRRI VFSVKEKSQR QKIAEEIGIE ENSTTRP00000002109/1-916 HDSEPGKGRL VREDENDASD DEDDDEKRRI VFSVKEKSQR QKIAEEIGIE 301 350 ENSBTAP00000003986/1-922 GSDDDALVTG EQDEELSRWE QEQIRKGINI PQVQASQPTE VNMYYQNTYQ ENSP00000328992/1-917 GSDDDALVTG EQDEELSRWE QEQIRKGINI PQVQASQPAE VNMYYQNTYQ bmy_01202T0/1-842 GSDDDALVTG EQDEELSRWE QEQIRKGINI PQVQASQPTE VNMYYQNTYQ ENSTTRP00000002109/1-916 GSDDDALVTG EQDEELSRWE QEQIRKGINI PQVQASQPTE VNMYYQNTYQ 351 400 ENSBTAP00000003986/1-922 TMPYGSSYGI PYSYSAYGSS DAKSQKTDNT VPFKTPSNEM TPVTIDLVKK ENSP00000328992/1-917 TMPYGSSYGI PYSYTAYGSS DAKSQKTDNT VPFKTPSNEM TPVTIDLVKK bmy_01202T0/1-842 TMPYGSSYGI PYSYTAYGSS DAKSQKTDNT VPFKTPSNEM TPVTIDLVKK ENSTTRP00000002109/1-916 TMPYGSSYGI PYSYTAYGSS DAKSQKTDNT VPFKTPSNEM TPVTIDLVKK 401 450 ENSBTAP00000003986/1-922 QLKDRLDSMK ELHKTNRQQH EKHLQSRADS TRAIERLEGS SGGIGERYKF ENSP00000328992/1-917 QLKDRLDSMK ELHKTNRQQH EKHLQSRVDS TRAIERLEGS SGGIGERYKF bmy_01202T0/1-842 QLKDRLDSMK ELHKTNRQQH EKHLQSRVDS TRAIERLEGS SGGIGERYKF ENSTTRP00000002109/1-916 QLKDRLDSMK ELHKTNRQQH EKHLQSRVDS TRAIERLEGS SGGIGERYKF 451 500 ENSBTAP00000003986/1-922 LQEMRGYVQD LLECFSEKVP LINELESAIH QLYKQRASRL VQRRQDDIKD ENSP00000328992/1-917 LQEMRGYVQD LLECFSEKVP LINELESAIH QLYKQRASRL VQRRQDDIKD bmy_01202T0/1-842 LQEMRGYVQD LLECFSEKVP LINELESAIH QLYKQRASRL VQRRQDDIKD ENSTTRP00000002109/1-916 LQEMRGYVQD LLECFSEKVP LINELESAIH QLYKQRASRL VQRRQDDIKD 501 550 ENSBTAP00000003986/1-922 ESSEFSSHSN KALMAPNLDS FGRDRALYQE HAKRRIAERE ARRTRRRQAR ENSP00000328992/1-917 ESSEFSSHSN KALMAPNLDS FGRDRALYQE HAKRRIAERE ARRTRRRQAR bmy_01202T0/1-842 ESSEFSSHSN KALMAPNLDS FGRDRALYQE HAKRRIAERE ARRTRRRQAR ENSTTRP00000002109/1-916 ESSEFSSHSN KALMAPNLDS FGRDRALYQE HAKRRIAERE ARRTRRRQAR 551 600 ENSBTAP00000003986/1-922 EQTGKMADHL EGLSSDDEET STDITNFNLE KDRISKESSK VFEDVLESFY ENSP00000328992/1-917 EQTGKMADHL EGLSSDDEET STDITNFNLE KDRISKESGK VFEDVLESFY bmy_01202T0/1-842 EQTGKMADHL EGLSSDDEET STDITNFNLE KDRISKESSK VFEDVLESFY ENSTTRP00000002109/1-916 EQTGKMADHL EGLSSDDEET STDITNFNLE KDRISKESSK VFEDVLESFC 601 650 ENSBTAP00000003986/1-922 SIDCIKSQFE AWRSKYYTSY KHAYIGLCLP KLLNPLIRLQ LLTWTPLEAK ENSP00000328992/1-917 SIDCIKSQFE AWRSKYYTSY KDAYIGLCLP KLFNPLIRLQ LLTWTPLEAK bmy_01202T0/1-842 SIDCIKSQFE AW-------- ---------- ---------- ---------- ENSTTRP00000002109/1-916 SIDCIKSQFE AWRSKYYTSY KDAYIGLCLP KLFNPLI-LQ LLTWTPLEAK 651 700 ENSBTAP00000003986/1-922 CRDFENMLWF ESLLFYGCEE REQEKDDVDV ALLPTIVEKV ILPKLTVIAE ENSP00000328992/1-917 CRDFENMLWF ESLLFYGCEE REQEKDDVDV ALLPTIVEKV ILPKLTVIAE bmy_01202T0/1-842 ---------- ---------Q REQEKDDVDV ALLPTIVEKV ILPKLTVIAE ENSTTRP00000002109/1-916 CRDFENMLWF ESLLFYGCEE REQEKDDVDV ALLPTIVEKV ILPKLTVIAE 701 750 ENSBTAP00000003986/1-922 NMWDPFSTTQ TSRMVGITLK LINGYPSVVN AENKNTQVYL KALLLRMRRT ENSP00000328992/1-917 NMWDPFSTTQ TSRMVGITLK LINGYPSVVN AENKNTQVYL KALLLRMRRT bmy_01202T0/1-842 NMWDPFSTTQ TSRMVGVTLK LVNGYPSVVN AENKNTQVYL KALLLRMRRT ENSTTRP00000002109/1-916 NMWDPFSTTQ TSRMVGITLK LINGYPSVVN AENKNTQVYL KALLLRMRRT 751 800 ENSBTAP00000003986/1-922 LDDDVFMPLY PKNVLENKNS GPYLFFQRQF WSSVKLLGNF LQWYGIFSNK ENSP00000328992/1-917 LDDDVFMPLY PKNVLENKNS GPYLFFQRQF WSSVKLLGNF LQWYGIFSNK bmy_01202T0/1-842 LDDDVFMPLY PKNVLENKNS GPYLFFQRQF WSSVK----- ---------- ENSTTRP00000002109/1-916 LDDDVFMPLY PKNVLENKNS GPYLFFQRQF WSSVKLLGNF LQWYGIFSNK 801 850 ENSBTAP00000003986/1-922 TLQELSIDGL LNRYILMAFQ NSEYGDDSIK KAQNVINCFP KQWFVNLKGE ENSP00000328992/1-917 TLQELSIDGL LNRYILMAFQ NSEYGDDSIK KAQNVINCFP KQWFMNLKGE bmy_01202T0/1-842 ---ELSIDGL LNRYILMAFQ NSEYGDDSIK KAQNVISCFP KQWFMNLKGE ENSTTRP00000002109/1-916 TLQELSIDGL LNRYILMAFQ NSEYGDDSIK KAQNVISCFP KQWFMNLKGE 851 900 ENSBTAP00000003986/1-922 RTISQLENFC RYLVHLADTI YRNSIGCSDV EKRNARENIK QIVKLLASVR ENSP00000328992/1-917 RTISQLENFC RYLVHLADTI YRNSIGCSDV EKRNARENIK QIVKLLASVR bmy_01202T0/1-842 RTISQLENFC RYLVHLADTI YRNSIGCSDV EKRNARENIK QIVKLLASVR ENSTTRP00000002109/1-916 RTISQLENFC RYLVHLADTI YRNSIGCSDV EKRNARENIK QIVKLLASVR 901 950 ENSBTAP00000003986/1-922 ALDHAMSVAS DHNVKEFKSL IEGK ENSP00000328992/1-917 ALDHAMSVAS DHNVKEFKSL IEGK bmy_01202T0/1-842 ALDHAISIAS DHNVKEFKSL IEGK ENSTTRP00000002109/1-916 ALDHAMSVAS DHNVKEFKSL IEGK