KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:40 2014 Check: 00 .. Name: bmy_04622T0/1-416 Len: 459 Check: 5082 Weight: 1.00 Name: ENSP00000259457/1-277 Len: 459 Check: 8542 Weight: 1.00 Name: BACU016296/1-277 Len: 459 Check: 7608 Weight: 1.00 Name: ENSTTRP00000012282/1-277 Len: 459 Check: 7722 Weight: 1.00 Name: ENSBTAP00000003990/1-277 Len: 459 Check: 8527 Weight: 1.00 // 1 50 bmy_04622T0/1-416 MAAVSVCDRP VGGFSFENCR RCGHVPGRVQ GGSGNAVPGS ELGCGLSREV ENSP00000259457/1-277 MAAVSVYAPP VGGFSFDNCR ---------- ---------- ---------- BACU016296/1-277 MAAVSVCERP VGGFSFENCR ---------- ---------- ---------- ENSTTRP00000012282/1-277 MAAVSVYEPP VGGFSFENCR ---------- ---------- ---------- ENSBTAP00000003990/1-277 MAAVSVYERP VGGFSFDNCR ---------- ---------- ---------- 51 100 bmy_04622T0/1-416 RTNGGGRGPR PAAPVTQGKT XRASAAQCGP ALQRFILSFA LRNAILEADF ENSP00000259457/1-277 ---------- ---------- ---------- ---------- -RNAVLEADF BACU016296/1-277 ---------- ---------- ---------- ---------- -RNAILEADF ENSTTRP00000012282/1-277 ---------- ---------- ---------- ---------- -RNAILEADF ENSBTAP00000003990/1-277 ---------- ---------- ---------- ---------- -RNAVLEADF 101 150 bmy_04622T0/1-416 AKKGSKLPMA RKTGTTIAGV VYKDGIVLGA DTRATEGMVV ADKN------ ENSP00000259457/1-277 AKRGYKLPKV RKTGTTIAGV VYKDGIVLGA DTRATEGMVV ADKNCSKIHF BACU016296/1-277 AKKGSKLPMA RKTGTTIAGV VYKDGIVLGA DTRATEGMVV ADKNCSKIHF ENSTTRP00000012282/1-277 AKKGSKLPMA RKTGTTIAGV VYKDGIVLGA DTRATEGMVV ADKNCSKIHF ENSBTAP00000003990/1-277 AKKGYKLPTA RKTGTTIAGV VYKDGIVLGA DTRATEGMVV ADKNCSKIHF 151 200 bmy_04622T0/1-416 ---------- --SADTDMTT QLISSNLELH SLSTGRLPRV VTANRMLKQM ENSP00000259457/1-277 ISPNIYCCGA GTAADTDMTT QLISSNLELH SLSTGRLPRV VTANRMLKQM BACU016296/1-277 ISPNIYCCGA GTAADTDMTT QLISSNLELH SLSTGRLPRV VTANRMLKQM ENSTTRP00000012282/1-277 ISPNIYCCGA GTAADTDMTT QLISSNLELH SLSTGRLPRV VTANRMLKQM ENSBTAP00000003990/1-277 ISPNIYCCGA GTAADTDMTT QLISSNLELH SLSTGRLPRV VTANRMLKQM 201 250 bmy_04622T0/1-416 LFRYQGYIGA ALVLGGVDVT GPHLYSIYPH GSTDKLPYVT MGDGEMDVER ENSP00000259457/1-277 LFRYQGYIGA ALVLGGVDVT GPHLYSIYPH GSTDKLPYVT M--------- BACU016296/1-277 LFRYQGYIGA ALVLGGVDVT GPHLYSIYPH GSTDKLPYVT M--------- ENSTTRP00000012282/1-277 LFRYQGYIGA ALVLGGVDVT GPHLYSIYPH GSTDKLPYVT M--------- ENSBTAP00000003990/1-277 LFRYQGYIGA ALVLGGVDVT GPHLYSIYPH GSTDKLPYVT M--------- 251 300 bmy_04622T0/1-416 EPQKCQNLRV LRDGKTWKRP AKGLLTCSLG SYFEMRARVK GAFERPVSSN ENSP00000259457/1-277 ---------- ---------- ---------- ---------- ---------- BACU016296/1-277 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012282/1-277 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003990/1-277 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_04622T0/1-416 CLELLQRERE VCALRSAVLT SRLLLIRQIL HFKSVAGDVT LVAFMPEPSS ENSP00000259457/1-277 ---------- ---------- ---------- ---------- ---------- BACU016296/1-277 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012282/1-277 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003990/1-277 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_04622T0/1-416 PGGSGSLAAM AVFEDKFRPD MEWGGWYLLN DIPPESALMI DVPPLSNPLD ENSP00000259457/1-277 --GSGSLAAM AVFEDKFRPD MEEEEAKNLV SEAIAAGIFN DLGSGSNIDL BACU016296/1-277 --GSGSLAAM AVFEDKFRPD MEEEEAKKLV SEAIAAGIFN DLGSGSNIDL ENSTTRP00000012282/1-277 --GSGSLAAM AVFEDKFRPD MEEEDAKKLV SEAIAAGIFN DLGSGSNIDL ENSBTAP00000003990/1-277 --GSGSLAAM AVFEDKFRPD MEEEEAKKLV SEAIAAGIFN DLGSGSNIDL 401 450 bmy_04622T0/1-416 PRISKNKPQL I--------- --------VI RASSVIGALK LSDLQI---- ENSP00000259457/1-277 CVISKNKLDF LRPYTVPNKK GTRLGRYRCE KGTTAVLTEK ITPLEIEVLE BACU016296/1-277 CVISKSKLDF LRPYSVPNKK GTRFGRYRCE KGTTAVLTEK VTTLEIEVLE ENSTTRP00000012282/1-277 CVISKSKLDF LRPYSVPNKK GTRFGRYRCE KGTTAVLTEK VTTLEIEVLE ENSBTAP00000003990/1-277 CVISKSKLDF LRPYSVPNKK GTRFGRYRCE KGTTAVLTEK VTTLEIEVLE 451 500 bmy_04622T0/1-416 ----TEEDN ENSP00000259457/1-277 ETVQTMDTS BACU016296/1-277 ETVQTMDTS ENSTTRP00000012282/1-277 ETVQTMDTS ENSBTAP00000003990/1-277 ETVQTMDTS