KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:22:41 2014 Check: 00 ..
Name: bmy_11219T0/1-429 Len: 638 Check: 8038 Weight: 1.00
Name: ENSP00000366542/1-485 Len: 638 Check: 4359 Weight: 1.00
Name: BACU007832/1-551 Len: 638 Check: 8137 Weight: 1.00
Name: ENSTTRP00000012776/1-485 Len: 638 Check: 9523 Weight: 1.00
Name: ENSBTAP00000003993/1-485 Len: 638 Check: 7386 Weight: 1.00
//
1 50
bmy_11219T0/1-429 MTTESKKAAA QNLQEHEGLL IVKIEEEDFV WKQGTCLQRS DPLRQELCRQ
ENSP00000366542/1-485 MATEPKKAAA QNSPEDEGLL IVKIEEEEFI HGQDTCLQRS ELLKQELCRQ
BACU007832/1-551 -------MES QLLRRSEGF- ---------- WEA------- ----------
ENSTTRP00000012776/1-485 MTTESKKATA QNLQEDEELL IVKIEEEDFV WKQDTCLQRS DTFRQELCRQ
ENSBTAP00000003993/1-485 MATESKKATA QNLQEDEGLL IVKMEEEDFV WRQGACLQRN DPLRQELCRR
51 100
bmy_11219T0/1-429 LFRQFCYQDS PGPREALSRL RELCCQWLKP ETHTKEQILE LLVLEQFLTI
ENSP00000366542/1-485 LFRQFCYQDS PGPREALSRL RELCCQWLKP EIHTKEQILE LLVLEQFLTI
BACU007832/1-551 -------QSK AGPS------ ---------P SAQPQKSLWK --------DA
ENSTTRP00000012776/1-485 LFRQFCYQDS PGPREALNRL RELCCQWLKP ETHTKEQILE LLVLEQFLTI
ENSBTAP00000003993/1-485 LFRQFCYQDS PGPRDALSQL RQLCCQWLKP ETQTKEQILE LLILEQFLAI
101 150
bmy_11219T0/1-429 LPGDLQAWVH EHYPETGEEA VTILEDLERG TDEAVLQIPV CGHGQELFRR
ENSP00000366542/1-485 LPGDLQAWVH EHYPESGEEA VTILEDLERG TDEAVLQVQA HEHGQEIFQK
BACU007832/1-551 LGGIAAPSCH RKCP-IGTSP VG-------- ------EIPV CGHGQELFRR
ENSTTRP00000012776/1-485 LPGDLQAWVH ERYPETGEEA VTILEDLERG TDEAVLQIPV CGHGQELFRR
ENSBTAP00000003993/1-485 LPGDLQAWVR ERYPESGEEA VTLLEDLERG TDEAVLQIPV CGHGQEPFRR
151 200
bmy_11219T0/1-429 KVAPPGPPLS VQFQPVNTKV LHGSSEPQLL LDRDNXSENS GSMPKLEIYE
ENSP00000366542/1-485 KVSPPGPALN VKLQPVETKA HFDSSEPQLL WDCDNESENS RSMPKLEIFE
BACU007832/1-551 KVAPPGPPLS VQFQPVNTKV LHGSSEPQLL LDHDNESENS GSMPKLEIYE
ENSTTRP00000012776/1-485 KVAPPGPPLS VQFQPVNTKV LHGASEPQLL LDRDNESENS GSVPKLEIYE
ENSBTAP00000003993/1-485 KVASPGPALS VPFQPVDTTA LHGSSEPQLL LDCDNKSENS ESMPKLDIYE
201 250
bmy_11219T0/1-429 RMESQRIISG RISGFVSEGS AEPQDICCS- ---QCLW--- NGSAFRISSS
ENSP00000366542/1-485 KIESQRIISG RISGYISEAS GESQDICKSA GRVKRQWEKE SGESQRLSSA
BACU007832/1-551 RMESQRIISG RISGFVSEGS AEPQDICKST GRIKRQQEKE SGESQKPSSA
ENSTTRP00000012776/1-485 RMESQRIISG RISGFVSEGS AEPQDICKSK GRLKRQQEKE SGESQKPSSA
ENSBTAP00000003993/1-485 KMESQKIVSG RISEFVSEGS AEPQDICKSA GKIKRQQEKD SGESQKSSSA
251 300
bmy_11219T0/1-429 RDTGATNYSF PDYEKDSLNG NI-------- ---QNSRPFM SKECALKDNT
ENSP00000366542/1-485 QDEG---FGK ILTHKNTVRG EIISHDGCER RLNLNSNEFT HQKSC-KHGT
BACU007832/1-551 QDGG---FSK ILTHKNTLTG EIISHDCCER SLNLNSNEFS HQKSC-KHST
ENSTTRP00000012776/1-485 QDGG---FSK ILTHKNTLTG EIISHDCCER SLNLNSNEFS HQKSC-KHST
ENSBTAP00000003993/1-485 QDAA---FSK ILTHKNTLRG EIISHDGCER NLNLNSNEFT HQKSC-KHST
301 350
bmy_11219T0/1-429 YQQSSSWP-- ------IGVG MAAVFLPDVP EEPKELFEVT NKKGPAVGQR
ENSP00000366542/1-485 CDQSFKWNSD FINHQIIYAG EKNHQYGKSF KSPKLAKHAA VFSGDKTHQC
BACU007832/1-551 YDQSFKWNSD FIKHQRIYAG EKIHQYGKSL KSPNLIKHAA IFSGEKTHQC
ENSTTRP00000012776/1-485 YDQSFKWNSD FIKHQRIYAG EKIHHYGKSL KSPNLIKHAA IFSGEKTHQC
ENSBTAP00000003993/1-485 CDQSFKWNSD FIKHQRIYAG EKIHPYGKSL KNPNLIKHAA VFTGEKTHQC
351 400
bmy_11219T0/1-429 SGTKGSSQNN QELFCQRFQH FCYKETPGPH EALSQLWVFC CEWLRPE-IH
ENSP00000366542/1-485 NECGKAFRHS SKLA--RHQR IHTGERCYEC NECGKSFAES SDLTRHRRIH
BACU007832/1-551 NECGKAFRHS SKLI--RHQR IHTGERPYEC NECGKGFGGS SDLIRHQRIH
ENSTTRP00000012776/1-485 NECGKAFRHS SKLI--RHQR IHTGERPYEC NECGKGFGGS SDLIRHQRIH
ENSBTAP00000003993/1-485 NECGKAFRHS SKLI--RHQR IHTGERPYEC NECGKGFGGS SDLIRHQRIH
401 450
bmy_11219T0/1-429 TKEQMLD--- ---LLVLEQF LTILPEELQD WAQEHQPESG EEAVALLEDL
ENSP00000366542/1-485 TGERPFGCKE CGRAFNLNSH L-IRHQRIHT REKPYECSEC GKTFRVSSHL
BACU007832/1-551 TGERPFECKE CGRAFSLNSH L-ILHQRIHT REKPYECSEC GKTFRVSSHL
ENSTTRP00000012776/1-485 TGERPFECKE CGRAFSLNSH L-ILHQRIHT REKPYECSEC GKTFRVSSHL
ENSBTAP00000003993/1-485 TGERPFECKE CGRAFSLNSH L-ILHQRIHT REKPYECSEC GKTFRVSSHL
451 500
bmy_11219T0/1-429 EREL------ -----DE--- ---------- ---------- ----------
ENSP00000366542/1-485 IRHFRIHTGE KPYECSE--- ---------- ---------- ----------
BACU007832/1-551 IRHLRIHTGE KPYECSDKTK TKNEELSQKE DIPKDMEFLG KINNRLTKAI
ENSTTRP00000012776/1-485 IRHLRIHTGE KPYECSE--- ---------- ---------- ----------
ENSBTAP00000003993/1-485 IRHLRTHTGE KPYECSE--- ---------- ---------- ----------
501 550
bmy_11219T0/1-429 ---------- ---------- ---------- SGQQMM---- ----------
ENSP00000366542/1-485 ---------- ---------- ---------- CGRAFSQSSN LSQHQRIHMR
BACU007832/1-551 PQYPESKDAI ESEGRFEWQQ RERRRYKCDD CGKSFSHSSD LSKHRRTHTG
ENSTTRP00000012776/1-485 ---------- ---------- ---------- CGRAFSQSSH LSQHQRIHKR
ENSBTAP00000003993/1-485 ---------- ---------- ---------- CGRAFSQSSH LSQHQRIHKR
551 600
bmy_11219T0/1-429 ---------- ---------- ---------- ---------- ----------
ENSP00000366542/1-485 ENLLM----- ---------- ---------- ---------- ----------
BACU007832/1-551 EKPYKCDECG KAFVQHSHLI GHHRVHTGVK PYKCKECGKD FSGRTGLIQH
ENSTTRP00000012776/1-485 ENLLM----- ---------- ---------- ---------- ----------
ENSBTAP00000003993/1-485 ENLFM----- ---------- ---------- ---------- ----------
601 650
bmy_11219T0/1-429 ---------- ---------- ---------- --------
ENSP00000366542/1-485 ---------- ---------- ---------- --------
BACU007832/1-551 QRIHTGEKPY ECDECGRPFR VSSALIRHQR IHTANKLY
ENSTTRP00000012776/1-485 ---------- ---------- ---------- --------
ENSBTAP00000003993/1-485 ---------- ---------- ---------- --------