KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:41 2014 Check: 00 .. Name: bmy_11219T0/1-429 Len: 638 Check: 8038 Weight: 1.00 Name: ENSP00000366542/1-485 Len: 638 Check: 4359 Weight: 1.00 Name: BACU007832/1-551 Len: 638 Check: 8137 Weight: 1.00 Name: ENSTTRP00000012776/1-485 Len: 638 Check: 9523 Weight: 1.00 Name: ENSBTAP00000003993/1-485 Len: 638 Check: 7386 Weight: 1.00 // 1 50 bmy_11219T0/1-429 MTTESKKAAA QNLQEHEGLL IVKIEEEDFV WKQGTCLQRS DPLRQELCRQ ENSP00000366542/1-485 MATEPKKAAA QNSPEDEGLL IVKIEEEEFI HGQDTCLQRS ELLKQELCRQ BACU007832/1-551 -------MES QLLRRSEGF- ---------- WEA------- ---------- ENSTTRP00000012776/1-485 MTTESKKATA QNLQEDEELL IVKIEEEDFV WKQDTCLQRS DTFRQELCRQ ENSBTAP00000003993/1-485 MATESKKATA QNLQEDEGLL IVKMEEEDFV WRQGACLQRN DPLRQELCRR 51 100 bmy_11219T0/1-429 LFRQFCYQDS PGPREALSRL RELCCQWLKP ETHTKEQILE LLVLEQFLTI ENSP00000366542/1-485 LFRQFCYQDS PGPREALSRL RELCCQWLKP EIHTKEQILE LLVLEQFLTI BACU007832/1-551 -------QSK AGPS------ ---------P SAQPQKSLWK --------DA ENSTTRP00000012776/1-485 LFRQFCYQDS PGPREALNRL RELCCQWLKP ETHTKEQILE LLVLEQFLTI ENSBTAP00000003993/1-485 LFRQFCYQDS PGPRDALSQL RQLCCQWLKP ETQTKEQILE LLILEQFLAI 101 150 bmy_11219T0/1-429 LPGDLQAWVH EHYPETGEEA VTILEDLERG TDEAVLQIPV CGHGQELFRR ENSP00000366542/1-485 LPGDLQAWVH EHYPESGEEA VTILEDLERG TDEAVLQVQA HEHGQEIFQK BACU007832/1-551 LGGIAAPSCH RKCP-IGTSP VG-------- ------EIPV CGHGQELFRR ENSTTRP00000012776/1-485 LPGDLQAWVH ERYPETGEEA VTILEDLERG TDEAVLQIPV CGHGQELFRR ENSBTAP00000003993/1-485 LPGDLQAWVR ERYPESGEEA VTLLEDLERG TDEAVLQIPV CGHGQEPFRR 151 200 bmy_11219T0/1-429 KVAPPGPPLS VQFQPVNTKV LHGSSEPQLL LDRDNXSENS GSMPKLEIYE ENSP00000366542/1-485 KVSPPGPALN VKLQPVETKA HFDSSEPQLL WDCDNESENS RSMPKLEIFE BACU007832/1-551 KVAPPGPPLS VQFQPVNTKV LHGSSEPQLL LDHDNESENS GSMPKLEIYE ENSTTRP00000012776/1-485 KVAPPGPPLS VQFQPVNTKV LHGASEPQLL LDRDNESENS GSVPKLEIYE ENSBTAP00000003993/1-485 KVASPGPALS VPFQPVDTTA LHGSSEPQLL LDCDNKSENS ESMPKLDIYE 201 250 bmy_11219T0/1-429 RMESQRIISG RISGFVSEGS AEPQDICCS- ---QCLW--- NGSAFRISSS ENSP00000366542/1-485 KIESQRIISG RISGYISEAS GESQDICKSA GRVKRQWEKE SGESQRLSSA BACU007832/1-551 RMESQRIISG RISGFVSEGS AEPQDICKST GRIKRQQEKE SGESQKPSSA ENSTTRP00000012776/1-485 RMESQRIISG RISGFVSEGS AEPQDICKSK GRLKRQQEKE SGESQKPSSA ENSBTAP00000003993/1-485 KMESQKIVSG RISEFVSEGS AEPQDICKSA GKIKRQQEKD SGESQKSSSA 251 300 bmy_11219T0/1-429 RDTGATNYSF PDYEKDSLNG NI-------- ---QNSRPFM SKECALKDNT ENSP00000366542/1-485 QDEG---FGK ILTHKNTVRG EIISHDGCER RLNLNSNEFT HQKSC-KHGT BACU007832/1-551 QDGG---FSK ILTHKNTLTG EIISHDCCER SLNLNSNEFS HQKSC-KHST ENSTTRP00000012776/1-485 QDGG---FSK ILTHKNTLTG EIISHDCCER SLNLNSNEFS HQKSC-KHST ENSBTAP00000003993/1-485 QDAA---FSK ILTHKNTLRG EIISHDGCER NLNLNSNEFT HQKSC-KHST 301 350 bmy_11219T0/1-429 YQQSSSWP-- ------IGVG MAAVFLPDVP EEPKELFEVT NKKGPAVGQR ENSP00000366542/1-485 CDQSFKWNSD FINHQIIYAG EKNHQYGKSF KSPKLAKHAA VFSGDKTHQC BACU007832/1-551 YDQSFKWNSD FIKHQRIYAG EKIHQYGKSL KSPNLIKHAA IFSGEKTHQC ENSTTRP00000012776/1-485 YDQSFKWNSD FIKHQRIYAG EKIHHYGKSL KSPNLIKHAA IFSGEKTHQC ENSBTAP00000003993/1-485 CDQSFKWNSD FIKHQRIYAG EKIHPYGKSL KNPNLIKHAA VFTGEKTHQC 351 400 bmy_11219T0/1-429 SGTKGSSQNN QELFCQRFQH FCYKETPGPH EALSQLWVFC CEWLRPE-IH ENSP00000366542/1-485 NECGKAFRHS SKLA--RHQR IHTGERCYEC NECGKSFAES SDLTRHRRIH BACU007832/1-551 NECGKAFRHS SKLI--RHQR IHTGERPYEC NECGKGFGGS SDLIRHQRIH ENSTTRP00000012776/1-485 NECGKAFRHS SKLI--RHQR IHTGERPYEC NECGKGFGGS SDLIRHQRIH ENSBTAP00000003993/1-485 NECGKAFRHS SKLI--RHQR IHTGERPYEC NECGKGFGGS SDLIRHQRIH 401 450 bmy_11219T0/1-429 TKEQMLD--- ---LLVLEQF LTILPEELQD WAQEHQPESG EEAVALLEDL ENSP00000366542/1-485 TGERPFGCKE CGRAFNLNSH L-IRHQRIHT REKPYECSEC GKTFRVSSHL BACU007832/1-551 TGERPFECKE CGRAFSLNSH L-ILHQRIHT REKPYECSEC GKTFRVSSHL ENSTTRP00000012776/1-485 TGERPFECKE CGRAFSLNSH L-ILHQRIHT REKPYECSEC GKTFRVSSHL ENSBTAP00000003993/1-485 TGERPFECKE CGRAFSLNSH L-ILHQRIHT REKPYECSEC GKTFRVSSHL 451 500 bmy_11219T0/1-429 EREL------ -----DE--- ---------- ---------- ---------- ENSP00000366542/1-485 IRHFRIHTGE KPYECSE--- ---------- ---------- ---------- BACU007832/1-551 IRHLRIHTGE KPYECSDKTK TKNEELSQKE DIPKDMEFLG KINNRLTKAI ENSTTRP00000012776/1-485 IRHLRIHTGE KPYECSE--- ---------- ---------- ---------- ENSBTAP00000003993/1-485 IRHLRTHTGE KPYECSE--- ---------- ---------- ---------- 501 550 bmy_11219T0/1-429 ---------- ---------- ---------- SGQQMM---- ---------- ENSP00000366542/1-485 ---------- ---------- ---------- CGRAFSQSSN LSQHQRIHMR BACU007832/1-551 PQYPESKDAI ESEGRFEWQQ RERRRYKCDD CGKSFSHSSD LSKHRRTHTG ENSTTRP00000012776/1-485 ---------- ---------- ---------- CGRAFSQSSH LSQHQRIHKR ENSBTAP00000003993/1-485 ---------- ---------- ---------- CGRAFSQSSH LSQHQRIHKR 551 600 bmy_11219T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSP00000366542/1-485 ENLLM----- ---------- ---------- ---------- ---------- BACU007832/1-551 EKPYKCDECG KAFVQHSHLI GHHRVHTGVK PYKCKECGKD FSGRTGLIQH ENSTTRP00000012776/1-485 ENLLM----- ---------- ---------- ---------- ---------- ENSBTAP00000003993/1-485 ENLFM----- ---------- ---------- ---------- ---------- 601 650 bmy_11219T0/1-429 ---------- ---------- ---------- -------- ENSP00000366542/1-485 ---------- ---------- ---------- -------- BACU007832/1-551 QRIHTGEKPY ECDECGRPFR VSSALIRHQR IHTANKLY ENSTTRP00000012776/1-485 ---------- ---------- ---------- -------- ENSBTAP00000003993/1-485 ---------- ---------- ---------- --------