KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:42 2014 Check: 00 .. Name: ENSTTRP00000009238/1-699 Len: 719 Check: 9841 Weight: 1.00 Name: ENSP00000438689/1-678 Len: 719 Check: 1172 Weight: 1.00 Name: bmy_01768T0/1-355 Len: 719 Check: 4611 Weight: 1.00 Name: BACU001265/1-633 Len: 719 Check: 7394 Weight: 1.00 Name: ENSBTAP00000003999/1-655 Len: 719 Check: 568 Weight: 1.00 // 1 50 ENSTTRP00000009238/1-699 MRQRPETPPT ASRCLVEDEA RLEPLWLTRR ERVNAQGSSG RSGSVMQAAR ENSP00000438689/1-678 ---------- ---------- ---------- ---------- -MLGGLAAAA bmy_01768T0/1-355 ---------- ---------- ---------- ---------- -----MQAAR BACU001265/1-633 ---------- ---------- ---------- ---------- -----MQAAK ENSBTAP00000003999/1-655 ---------- ---------- ---------- ---------- -----MRAAR 51 100 ENSTTRP00000009238/1-699 MAPSMGRQL- ---------- --------LR LGSGSSRSSA LLGQPRPGLA ENSP00000438689/1-678 GTRIMGKEIE AEAQRPLRQT WRPGQPPAMT AKTMSSRLTA LLGQPRPGPA bmy_01768T0/1-355 MAPSMGRQL- ---------- --------LR LGSGSSRPSA LLGQSRPGLA BACU001265/1-633 MAPSMGRQL- ---------- --------LR LGSGSSRPSA LLGQSRPGLA ENSBTAP00000003999/1-655 MAQSTGRQL- ---------- --------LR LRGVSSWPGE LLGQPRPGPA 101 150 ENSTTRP00000009238/1-699 WRPYASGAAQ AAVEKSESLS SEASTRENRA KPESKSFAVG MFKGQLTTDQ ENSP00000438689/1-678 RRPYAGGAAQ LALDKSDSHP SDALTRKKPA KAESKSFAVG MFKGQLTTDQ bmy_01768T0/1-355 WRPYASGAAQ AAVEKSDSLS SEASTREKRA KPESKSFAVG MFKGQLTTDQ BACU001265/1-633 WRPYASGAAQ ---------- ---------- --ESKSFAVG MFKGQLTTDQ ENSBTAP00000003999/1-655 RRPYASGVAQ AAVDQSDSQP SEASTREKRA NSVSKSFAVG TFKGQLTTDQ 151 200 ENSTTRP00000009238/1-699 VFPYPSVLNE DQTQFLKELV GPVSRFFEEV NDPAKNDMLE QVEETTMQGL ENSP00000438689/1-678 VFPYPSVLNE EQTQFLKELV EPVSRFFEEV NDPAKNDALE MVEETTWQGL bmy_01768T0/1-355 VFPYPSVLNE DQTQFLKELV GPVSRFFEEV NDPAKNDMLE QVEETTMQGL BACU001265/1-633 VFPYPSVLNE DQTQFLKELV GPVSRFFEEV NDPAKNDMLE QVEETTMQGL ENSBTAP00000003999/1-655 VFPYPSVLNE DQTQFLKELV GPVTRFFEEV NDAAKNDMLE RVEETTMQGL 201 250 ENSTTRP00000009238/1-699 KELGAFGLQV PSELGGVGLC NTQYARLVEI VGMHDLGLAI VLGAHQSIGF ENSP00000438689/1-678 KELGAFGLQV PSELGGVGLC NTQYARLVEI VGMHDLGVGI TLGAHQSIGF bmy_01768T0/1-355 KELGAFGLQV PSELGGVGLC NTQYARLVEI VGMHDLGLAI VLGAHQSIGF BACU001265/1-633 KELGAFGLQV PSELGGVGLC NTQYARLVEI VGMHDLGLAI VLGAHQSIGF ENSBTAP00000003999/1-655 KELGAFGLQV PNELGGVGLC NTQYARLVEI VGMYDLGVGI VLGAHQSIGF 251 300 ENSTTRP00000009238/1-699 KGILLFGTKA QKEKYLPKLA SGETIAAFCL TEPSSGSDAA SIRTSAVPSP ENSP00000438689/1-678 KGILLFGTKA QKEKYLPKLA SGETVAAFCL TEPSSGSDAA SIRTSAVPSP bmy_01768T0/1-355 KGILLFGTKA QKEKYLPKLA S--------- ---------- ---------- BACU001265/1-633 KGILLFGTKA QKEKYLPKLA SGETIAAFCL TEPSSGSDAA SIRTSAVPSP ENSBTAP00000003999/1-655 KGILLFGTKA QKEKYLPKLA SGETIAAFCL TEPSSGSDAA SIRSSAVPSP 301 350 ENSTTRP00000009238/1-699 CGRYYTLSGS KIWIXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000438689/1-678 CGKYYTLNGS KLWISNGGLA DIFTVFAKTP VTDPATGAVK EKITAFVVER bmy_01768T0/1-355 ---------- ---------A DIFTVFAKTP VKDTATGAVK EKITAFVVER BACU001265/1-633 CGKYYTLSGS KIWISNGGLA DIFTVFAKTP VKDTAMGAVK EKITAFVVER ENSBTAP00000003999/1-655 CGKYYTLNGS KIWISNGGLA DIFTVFAKTP VTDTATGAVK EKITAFVVER 351 400 ENSTTRP00000009238/1-699 XXXXXXXGPP EKKMGIKASN TAEVHFDGVQ VPSENVLGEV GGGFKVAMHI ENSP00000438689/1-678 GFGGITHGPP EKKMGIKASN TAEVFFDGVR VPSENVLGEV GSGFKVAMHI bmy_01768T0/1-355 SFGGVTNGPP EKKMGIKASN TAEVHFDGVQ VPSENVLGEV GGGFKVAMHI BACU001265/1-633 SFGGVTNGPP EKKMGIKASN TAEVHFDGVQ VPSENVLGEV GGGFKVAMHI ENSBTAP00000003999/1-655 SFGGVTHGPP EKKMGIKASN TAEVYFDGVR VPAENVLGEV GGGFKVAMHI 401 450 ENSTTRP00000009238/1-699 LNNGRFGMAA AMAGTMKGII AKAVDHAANR TQFGEKIHNF GMIQEKLARM ENSP00000438689/1-678 LNNGRFGMAA ALAGTMRGII AKAVDHATNR TQFGEKIHNF GLIQEKLARM bmy_01768T0/1-355 LNNGRFGMAA AMAGTMKGII AKAVST---- ---------- --LPESLASQ BACU001265/1-633 LNNGRFGMAA AMAGTMKGII AKAVDHAANR TQFGEKIHNF GMIQEKLARM ENSBTAP00000003999/1-655 LNNGRFGMAA ALAGTMKGII AKAVDHAANR TQFGEKIHNF GLIQEKLARM 451 500 ENSTTRP00000009238/1-699 AMLQYVTESM AYMVSANMDQ GSTDFQIEAA ISKIFGSEAA WKVTDECIQI ENSP00000438689/1-678 VMLQYVTESM AYMVSANMDQ GATDFQIEAA ISKIFGSEAA WKVTDECIQI bmy_01768T0/1-355 S--------- ---------- ---------- ---------- -KPKSHC--- BACU001265/1-633 AMLQYVTESM AYMVSANMDQ GSTDFQIEAA ISKIFGSEAA WKVTDECIQI ENSBTAP00000003999/1-655 AMLQYVTESM AYMVSANMDQ GSTDFQIEAA ISKIFGSEAA WKVTDECIQI 501 550 ENSTTRP00000009238/1-699 MGGMGFMKEP GVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000438689/1-678 MGGMGFMKEP GVERVLRDLR IFRIFEGTND ILRLFVALQG CMDKGKELSG bmy_01768T0/1-355 ---------- ---------- ---------- -PPFHVSLVS C--------- BACU001265/1-633 MGGMGFMKEP GVERVLRDLR IFRIFEGTND ILRLFVALQG CMDKGKELSG ENSBTAP00000003999/1-655 MGGMGFMKEP GVERVLRDLR IFRIFEGTND ILRLFVALQG CMDKGKELSG 551 600 ENSTTRP00000009238/1-699 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000438689/1-678 LGSALKNPFG NAGLLLGEAG KQLRRRAGLG SGLSLSGLVH PELSRSGELA bmy_01768T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU001265/1-633 LGSALKNPFG NVGLLLGEAS KQLRRRAGLG SGLSLSGTIH QELSRSGELA ENSBTAP00000003999/1-655 LGNALKNPFG NAGLLLGEAG KQLRRRAGLG SGLSLSGIVH QELSRSGELA 601 650 ENSTTRP00000009238/1-699 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAS ENSP00000438689/1-678 VRALEQFATV VEAKLIKHKK GIVNEQFLLQ RLADGAIDLY AMVVVLSRAS bmy_01768T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU001265/1-633 VQALEQFAAV VETKLIKHKK EIVNEQFLLQ RLADSAIDLY AMVVVLSRAS ENSBTAP00000003999/1-655 VQALEQFATV VEAKLIKHKK DIINEQFLLQ RLADSAIDLY AMVVVLSRAS 651 700 ENSTTRP00000009238/1-699 RA-SEGHPTA QHEKMLCDSW CTEAAARIRE NMAALQSDPQ QQELFRNFKS ENSP00000438689/1-678 RSLSEGHPTA QHEKMLCDTW CIEAAARIRE GMAALQSDPW QQELYRNFKS bmy_01768T0/1-355 ------KPSL HQRPLPCQQ- ---------- ----LQT--- ---------- BACU001265/1-633 RALSEGHPTA QHEKMLCDSW CTEAAARIRE NVAALQSDPQ QQELFRNFKS ENSBTAP00000003999/1-655 RSLSEGHPTA QHEKMLCDSW CIEAAARIRE NMTALQSDPQ QQELFRNFKS 701 750 ENSTTRP00000009238/1-699 ISKALVERGG VVTSNPLGF ENSP00000438689/1-678 ISKALVERGG VVTSNPLGF bmy_01768T0/1-355 ---------- --------- BACU001265/1-633 ISKALVERGG VVTSNPLGF ENSBTAP00000003999/1-655 ISKALVERGG VVTSNPLGF